View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11030_low_4 (Length: 455)
Name: NF11030_low_4
Description: NF11030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11030_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 7e-93; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 2322084 - 2322287
Alignment:
| Q |
1 |
atgtttcctccctaaacatctgtggtcttaaattatagggttgtaacttgtaattttgagtgtgcagaagtgatgcatagaatagagttatggccagaat |
100 |
Q |
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| T |
2322084 |
atgtttcctccctaaacatctgtggtcttaaattatagggttgtaacttgtaattttgagtgtgctgaagtgatgcatagaatagagttatggccagaat |
2322183 |
T |
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| Q |
101 |
gaaatggtacttcatgattttcttaataacaaaatccacagttttagagctagtttaatttgtcaacctgagttaatcatcataaattactgtatcctaa |
200 |
Q |
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| T |
2322184 |
gaaatggtacttcatgattttcttaataacaagatccacagttttagagctag-----tttgtcaacctgagttaatcatcatcaattactgtatcctaa |
2322278 |
T |
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| Q |
201 |
atacaccta |
209 |
Q |
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|||| |||| |
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| T |
2322279 |
atactccta |
2322287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 208 - 437
Target Start/End: Original strand, 2322420 - 2322649
Alignment:
| Q |
208 |
tatttttgtaaatactttccatctatggtcttcaaagaatgtcctgaaaacgaggttaatatctctcttttatnnnnnnnnnnnnnnnnnnnnnnnntta |
307 |
Q |
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| T |
2322420 |
tatttttgtaaatactttccatctatggtcttcaaagaatgtcctgaaaacaaggttaatatctctcttttataaaaataaaaaaaaggaataaaaatta |
2322519 |
T |
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| Q |
308 |
actaatcaagacaattggtgaccaatcatgagggtgaataaaaatatagtgaatagatgaattgatcatcaaaataattattgatttttgcaacaaattt |
407 |
Q |
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| T |
2322520 |
actaatcaagacaattggtgaccaatcatgagggtgaataaaaatatagtgaatagatgaattgatcatcaaaataattattgatttttgcaacaaattt |
2322619 |
T |
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| Q |
408 |
ttaccataactctttgttataaggtatgac |
437 |
Q |
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| T |
2322620 |
ttagcataagtctttgttataaggtatgac |
2322649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 2294665 - 2294793
Alignment:
| Q |
1 |
atgtttcctccctaaacatctgtggtcttaaattatagggttgtaacttgtaattttgagtgtgcagaagtgatgcatagaatagagttatggccagaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
2294665 |
atgtttcctccctaaacatctgtggtcttaaattatagggttgtaacttgtaattttgagtgtgcagaagtgatgcatagaatagagttatggccaaagt |
2294764 |
T |
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| Q |
101 |
gaaatggtacttcatgattttcttaataa |
129 |
Q |
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| T |
2294765 |
gaaatggtgcttcatgattttcttaataa |
2294793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 2304461 - 2304534
Alignment:
| Q |
68 |
aagtgatgcatagaatagagttatggccagaatgaaatggtacttcatgattttcttaataacaaaatccacag |
141 |
Q |
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||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
2304461 |
aagtgatgcatagaatagagttatggccaaagtgaaatggtgcttcatgattttcttaataacaagatccacag |
2304534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 320 - 382
Target Start/End: Original strand, 2295373 - 2295435
Alignment:
| Q |
320 |
aattggtgaccaatcatgagggtgaataaaaatatagtgaatagatgaattgatcatcaaaat |
382 |
Q |
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| T |
2295373 |
aattggtgaccaatcataagtgtgaataaaaatagagcgaatagataaattgatcctcaaaat |
2295435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 382
Target Start/End: Original strand, 2311183 - 2311245
Alignment:
| Q |
320 |
aattggtgaccaatcatgagggtgaataaaaatatagtgaatagatgaattgatcatcaaaat |
382 |
Q |
| |
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||||| ||||||||||| || ||||||||||||| || |||||||| |||||||| ||||||| |
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| T |
2311183 |
aattgatgaccaatcataagtgtgaataaaaatagagcgaatagataaattgatcctcaaaat |
2311245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 2332248 - 2332315
Alignment:
| Q |
18 |
atctgtggtcttaaattatagggttgtaacttgtaattttgagtgtgcagaagtgatgcatagaatagagt |
88 |
Q |
| |
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| T |
2332248 |
atctgtggtcttaatttc-agggttgtaatttgtaattttga--gtgcagaaatgatgcaaagaatagagt |
2332315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 382
Target Start/End: Original strand, 2278707 - 2278740
Alignment:
| Q |
349 |
aaatatagtgaatagatgaattgatcatcaaaat |
382 |
Q |
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| T |
2278707 |
aaatagagtgaatagatgaattgatcatcaaaat |
2278740 |
T |
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