View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11030_low_7 (Length: 371)

Name: NF11030_low_7
Description: NF11030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11030_low_7
NF11030_low_7
[»] scaffold0005 (2 HSPs)
scaffold0005 (71-283)||(230832-231042)
scaffold0005 (25-79)||(230593-230647)
[»] chr4 (4 HSPs)
chr4 (71-283)||(14586332-14586542)
chr4 (125-209)||(3650097-3650181)
chr4 (25-77)||(26720355-26720407)
chr4 (25-79)||(14586727-14586781)
[»] chr6 (2 HSPs)
chr6 (71-209)||(33053905-33054041)
chr6 (25-59)||(27444245-27444279)
[»] scaffold0003 (1 HSPs)
scaffold0003 (25-59)||(43082-43116)
[»] chr3 (4 HSPs)
chr3 (25-59)||(31688000-31688034)
chr3 (25-59)||(31896833-31896867)
chr3 (25-59)||(31912542-31912576)
chr3 (25-59)||(31946190-31946224)


Alignment Details
Target: scaffold0005 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 71 - 283
Target Start/End: Original strand, 230832 - 231042
Alignment:
Q  71 tttcaaattttccctccttgccttatgtgtcacttaatgcattgtgtgcttgctttccaccttctctcatcacatttaattggcttatacttttccatgt 170  Q
    ||||||||||||||||||||||||| ||  ||||||| |||||||||||||||||||||||||| || |||||||| ||||| ||||||||||||||||     
T  230832 tttcaaattttccctccttgccttaggt--cacttaacgcattgtgtgcttgctttccaccttcccttatcacattaaattgacttatacttttccatgc 230929  T
Q  171 atctgtgttttaccaatgcaaggtgtttttatggcatattacaaaaaacaacgggcattgaaactttcagacttcaaatcacatttgacttggattcctt 270  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||    
T  230930 atctgtgttttaccaatgcaaggtgcttttatggcatattacaaaaaacaacgggcattgaaaccctcagacttcaaatcacatttggcttggattcctt 231029  T
Q  271 caattgaatatca 283  Q
    |||||||||||||    
T  231030 caattgaatatca 231042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 230593 - 230647
Alignment:
Q  25 atctgatcttgctgctggctggcacaaatcacaatgcacacttcaatttcaaatt 79  Q
    ||||||||||  ||||| || |||||||||||||| |||||||||||||||||||    
T  230593 atctgatctttttgctgactagcacaaatcacaatacacacttcaatttcaaatt 230647  T

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Target: chr4 (Bit Score: 158; Significance: 5e-84; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 71 - 283
Target Start/End: Complemental strand, 14586542 - 14586332
Alignment:
Q  71 tttcaaattttccctccttgccttatgtgtcacttaatgcattgtgtgcttgctttccaccttctctcatcacatttaattggcttatacttttccatgt 170  Q
    ||||||||||||||||||||||||| ||  ||||||| |||||||||||||||||||||||||| || |||||||| ||||| ||||||||||||||||     
T  14586542 tttcaaattttccctccttgccttaggt--cacttaacgcattgtgtgcttgctttccaccttcccttatcacattaaattgacttatacttttccatgc 14586445  T
Q  171 atctgtgttttaccaatgcaaggtgtttttatggcatattacaaaaaacaacgggcattgaaactttcagacttcaaatcacatttgacttggattcctt 270  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||    
T  14586444 atctgtgttttaccaatgcaaggtgcttttatggcatattacaaaaaacaacgggcattgaaaccctcagacttcaaatcacatttggcttggattcctt 14586345  T
Q  271 caattgaatatca 283  Q
    |||||||||||||    
T  14586344 caattgaatatca 14586332  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 125 - 209
Target Start/End: Original strand, 3650097 - 3650181
Alignment:
Q  125 ttccaccttctctcatcacatttaattggcttatacttttccatgtatctgtgttttaccaatgcaaggtgtttttatggcatat 209  Q
    ||||| |||| || |||||||| |||||||||||||||| ||||| || |||||| ||||||||||||||| ||| |||||||||    
T  3650097 ttccaacttcccttatcacattaaattggcttatactttcccatgcatatgtgttgtaccaatgcaaggtgctttcatggcatat 3650181  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 26720355 - 26720407
Alignment:
Q  25 atctgatcttgctgctggctggcacaaatcacaatgcacacttcaatttcaaa 77  Q
    |||| ||||||||| ||||| |||||||||||||| |||||||||||||||||    
T  26720355 atctaatcttgctgttggctagcacaaatcacaatacacacttcaatttcaaa 26720407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 14586781 - 14586727
Alignment:
Q  25 atctgatcttgctgctggctggcacaaatcacaatgcacacttcaatttcaaatt 79  Q
    ||||||||||  ||||| || |||||||||||||| |||||||||||||||||||    
T  14586781 atctgatctttttgctgactagcacaaatcacaatacacacttcaatttcaaatt 14586727  T

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Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 71 - 209
Target Start/End: Complemental strand, 33054041 - 33053905
Alignment:
Q  71 tttcaaattttccctccttgccttatgtgtcacttaatgcattgtgtgcttgctttccaccttctctcatcacatttaattggcttatacttttccatgt 170  Q
    ||||||||||||||||||| ||||| |   ||| |||||||   ||||||| ||||||| |||| || |||||||| |||||||||||||||| ||||      
T  33054041 tttcaaattttccctccttaccttacgc--cacataatgcagactgtgcttcctttccaacttcccttatcacattaaattggcttatactttcccatac 33053944  T
Q  171 atctgtgttttaccaatgcaaggtgtttttatggcatat 209  Q
    || |||||| ||||||||||||||| |||||||||||||    
T  33053943 atatgtgttgtaccaatgcaaggtgcttttatggcatat 33053905  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 27444245 - 27444279
Alignment:
Q  25 atctgatcttgctgctggctggcacaaatcacaat 59  Q
    |||||||||||||||||||||||||||||||||||    
T  27444245 atctgatcttgctgctggctggcacaaatcacaat 27444279  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 43116 - 43082
Alignment:
Q  25 atctgatcttgctgctggctggcacaaatcacaat 59  Q
    |||||||||||||||||||| ||||||||||||||    
T  43116 atctgatcttgctgctggcttgcacaaatcacaat 43082  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 31688000 - 31688034
Alignment:
Q  25 atctgatcttgctgctggctggcacaaatcacaat 59  Q
    |||||||||||||||||||| ||||||||||||||    
T  31688000 atctgatcttgctgctggctagcacaaatcacaat 31688034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 31896867 - 31896833
Alignment:
Q  25 atctgatcttgctgctggctggcacaaatcacaat 59  Q
    |||||||||||||||||||| ||||||||||||||    
T  31896867 atctgatcttgctgctggctagcacaaatcacaat 31896833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 31912576 - 31912542
Alignment:
Q  25 atctgatcttgctgctggctggcacaaatcacaat 59  Q
    |||||||||||||||||||| ||||||||||||||    
T  31912576 atctgatcttgctgctggctagcacaaatcacaat 31912542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 31946224 - 31946190
Alignment:
Q  25 atctgatcttgctgctggctggcacaaatcacaat 59  Q
    |||||||||||||||||||| ||||||||||||||    
T  31946224 atctgatcttgctgctggctagcacaaatcacaat 31946190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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