View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11030_low_8 (Length: 370)
Name: NF11030_low_8
Description: NF11030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11030_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 12 - 357
Target Start/End: Complemental strand, 3070001 - 3069656
Alignment:
| Q |
12 |
agatgaagacaaagctatcttaactgattgggcttatgattgctacaaatatggtgctttaggtgcattggttgagggtgacaatgaggcattggaggac |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3070001 |
agatgaagacaaagctatcttaactgattgggcttatgattgctacaaatatggtgctttaggtgcattggttgagggtgacaatgaggcattggaggac |
3069902 |
T |
|
| Q |
112 |
aaggaaaatttggagaaattggtaaacattgctatttggtgtgttcaagaggatccatgtcttagatcaaccatgagaaatgtgatacatatgcttgaag |
211 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3069901 |
aaggaaaatttggagaaattggtaaagattgctatttggtgtgttcaagaggatgcatgtcttagatcaaccatgagaaatgtgatacatatgcttgaag |
3069802 |
T |
|
| Q |
212 |
gtactgttgaagtgcaagctccgttaaacccctcaccatttagtattcaatattctctaaattaataagttgctaagcaaggggttcagcttgtgcttat |
311 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3069801 |
gtactgttgaagtgcaagctccgttaaacccctcaccgtttagtattcaatattctctaaattaataagttgctaagcaaggggttcagcttgtgcttat |
3069702 |
T |
|
| Q |
312 |
ccttgtttcgctgttttaagcatactgtgatattgcttttatgtct |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3069701 |
ccttgtttcgctgttttaagcatactgtgatattgcttttatgtct |
3069656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 12 - 283
Target Start/End: Original strand, 3036043 - 3036314
Alignment:
| Q |
12 |
agatgaagacaaagctatcttaactgattgggcttatgattgctacaaatatggtgctttaggtgcattggttgagggtgacaatgaggcattggaggac |
111 |
Q |
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||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
3036043 |
agatgaagacaaagcaattttaactgattgggcttatgattgctacaatgatggtgctttagatgcattggttgagggtgacaatgaagcattggaggac |
3036142 |
T |
|
| Q |
112 |
aaggaaaatttggagaaattggtaaacattgctatttggtgtgttcaagaggatccatgtcttagatcaaccatgagaaatgtgatacatatgcttgaag |
211 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
3036143 |
aaggaaaatttggagaaattggtaatgattgctctttggtgtgttcaagaggatccatgtcttagaccaaccatgagaaatgtggtacatatgcttgaag |
3036242 |
T |
|
| Q |
212 |
gtactgttgaagtgcaagctccgttaaacccctcaccatttagtattcaatattctctaaattaataagttg |
283 |
Q |
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|||||||||||||||||| ||| | ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3036243 |
gtactgttgaagtgcaagttccaccatacccctcaccaattagtattcaatattctctaaattaataagttg |
3036314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 281
Target Start/End: Original strand, 3056911 - 3057180
Alignment:
| Q |
12 |
agatgaagacaaagctatcttaactgattgggcttatgattgctacaaatatggtgctttaggtgcattggttgagggtgacaatgaggcattggaggac |
111 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
3056911 |
agatgaagacaaagcaattttaactgattgggcttatgattgctacaaagatggtgctttatgtgcattggttgagggtgacaatgaagcattggaggac |
3057010 |
T |
|
| Q |
112 |
aaggaaaatttggagaaattggtaaacattgctatttggtgtgttcaagaggatccatgtcttagatcaaccatgagaaatgtgatacatatgcttgaag |
211 |
Q |
| |
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||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||| ||| ||||||| ||||| ||||||||||||||| |
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| T |
3057011 |
aaggaaaatttggagaaattggtaatgattgctctttggtgtgttcaagaggatccatatcttagaccaaacatgagagatgtggtacatatgcttgaag |
3057110 |
T |
|
| Q |
212 |
gtactgttgaagtgcaagctccgttaaacccctcaccatttagtattcaatattctctaaattaataagt |
281 |
Q |
| |
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|||||||||||||||||| ||| | ||||||||| | ||||||||||||||||||||||||||||||| |
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|
| T |
3057111 |
gtactgttgaagtgcaagttccaccatacccctcacaaattagtattcaatattctctaaattaataagt |
3057180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 3049038 - 3048840
Alignment:
| Q |
14 |
atgaagacaaagctatcttaactgattgggcttatgattgctacaaatatggtgctttaggtgcattggttgagggtgacaatgaggcattggaggacaa |
113 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||| ||||||||| | ||| | ||| | | ||||||||||||||||||||||||||| ||||||| |
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| T |
3049038 |
atgaatacaaagctatcttaactgaatgggcttatgactgctacaaagaaggtattctagatcccttggttgagggtgacaatgaggcattgaaggacaa |
3048939 |
T |
|
| Q |
114 |
ggaaaatttggagaaattggtaaacattgctatttggtgtgttcaagaggatccatgtcttagatcaaccatgagaaatgtgatacatatgcttgaagg |
212 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3048938 |
ggaaaatttggagaaattggtaaagattgctatttggtgtgttcaagaggatccatatcttagaccaaccatgagaaatgtgatacatatgcttgaagg |
3048840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 279
Target Start/End: Complemental strand, 3048436 - 3048358
Alignment:
| Q |
203 |
tgcttgaaggtactgttgaagtgcaagctccgt--taaacccctcaccatttagtattcaatattctctaaattaataa |
279 |
Q |
| |
|
||||||||||||||||||||||||||| ||| || |||| |||||| |||||||| |||||||||||||||||||| |
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|
| T |
3048436 |
tgcttgaaggtactgttgaagtgcaagttccaccatacacccttcaccaattagtattgaatattctctaaattaataa |
3048358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 59
Target Start/End: Original strand, 28445711 - 28445739
Alignment:
| Q |
31 |
ttaactgattgggcttatgattgctacaa |
59 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
28445711 |
ttaactgattgggcttatgattgctacaa |
28445739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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