View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11030_low_9 (Length: 365)

Name: NF11030_low_9
Description: NF11030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11030_low_9
NF11030_low_9
[»] chr2 (8 HSPs)
chr2 (12-159)||(25557788-25557936)
chr2 (249-352)||(25558449-25558552)
chr2 (157-246)||(25558086-25558173)
chr2 (80-159)||(4865477-4865555)
chr2 (59-137)||(37828446-37828523)
chr2 (59-116)||(4865682-4865739)
chr2 (59-116)||(29667569-29667626)
chr2 (88-159)||(34887855-34887924)
[»] chr7 (8 HSPs)
chr7 (59-159)||(1505543-1505643)
chr7 (59-147)||(23457411-23457499)
chr7 (59-147)||(23533269-23533357)
chr7 (59-159)||(23474929-23475029)
chr7 (59-125)||(23443335-23443401)
chr7 (60-116)||(2169266-2169322)
chr7 (59-127)||(23534133-23534201)
chr7 (58-107)||(25921030-25921081)
[»] chr5 (5 HSPs)
chr5 (59-159)||(17476169-17476268)
chr5 (70-137)||(7148294-7148360)
chr5 (59-137)||(38299728-38299804)
chr5 (59-134)||(38299874-38299953)
chr5 (57-105)||(41048646-41048694)
[»] chr1 (3 HSPs)
chr1 (57-147)||(27630998-27631088)
chr1 (57-115)||(51249165-51249223)
chr1 (59-147)||(42175252-42175340)
[»] chr3 (4 HSPs)
chr3 (58-159)||(30259605-30259706)
chr3 (62-116)||(30259865-30259919)
chr3 (68-116)||(38421258-38421306)
chr3 (89-145)||(52236576-52236632)
[»] chr6 (4 HSPs)
chr6 (60-156)||(34448430-34448526)
chr6 (59-159)||(1706803-1706903)
chr6 (57-114)||(5449483-5449541)
chr6 (58-115)||(4974690-4974747)
[»] chr4 (4 HSPs)
chr4 (80-159)||(53801506-53801585)
chr4 (59-159)||(12828554-12828655)
chr4 (59-120)||(52074897-52074958)
chr4 (80-147)||(26310235-26310300)
[»] chr8 (4 HSPs)
chr8 (59-116)||(13706217-13706274)
chr8 (59-146)||(1410698-1410783)
chr8 (59-99)||(1410470-1410510)
chr8 (59-138)||(29795754-29795833)


Alignment Details
Target: chr2 (Bit Score: 113; Significance: 4e-57; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 12 - 159
Target Start/End: Original strand, 25557788 - 25557936
Alignment:
Q  12 gaacctgtgacccaaatatggcaatgcgagtagtatatactcatattgaaaattgttcttctcccaataaaaaa-cgttcactcccatataaactgacca 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||| |||||| || ||||||||||| ||||||||||    
T  25557788 gaacctgtgacccaaatatggcaatgcgagtagtatatactcatattaaaaattgctcttcttccaacaaaaaaacgctcactcccatacaaactgacca 25557887  T
Q  111 aaatactccccacgtgtgttaactcacattcggtaagataaagtataac 159  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  25557888 aaatactccccacgtgtgttaactcacattcggtaagatgaagtataac 25557936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 249 - 352
Target Start/End: Original strand, 25558449 - 25558552
Alignment:
Q  249 atgtaaggctgatagtaaaagttttaaactaagcccaataagcccattacacaacctgttaaaaacaaaacacaactcttaaatccctatttcacaacac 348  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  25558449 atgtaaggctggtagtaaaagttttaaactaagcctaataagcccattacacaacctgttaaaaacaaaacacaactcctaaatccctatttcacaacac 25558548  T
Q  349 aggt 352  Q
    ||||    
T  25558549 aggt 25558552  T

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Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 157 - 246
Target Start/End: Original strand, 25558086 - 25558173
Alignment:
Q  157 aacaacaaataggtaattaaatcccctaaaacacaaataggtaattttaattaagaaaaaagagcaaaattatatccattttagcaatta 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||    
T  25558086 aacaacaaataggtaattaaatcccctaaaacacaaataggtaa--ttaattaagaaaaaagagcaaaattagatccattttagcaatta 25558173  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 80 - 159
Target Start/End: Original strand, 4865477 - 4865555
Alignment:
Q  80 aaaaaacgttcactcccatataaactgaccaaaatactccccacgtgtgttaactcacattcggtaagataaagtataac 159  Q
    ||||||||||||||| |||| ||||| |||||||||| ||||||||| |||||||||| || |||||| | |||||||||    
T  4865477 aaaaaacgttcactctcatacaaacttaccaaaatac-ccccacgtgagttaactcacgtttggtaagctgaagtataac 4865555  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 59 - 137
Target Start/End: Original strand, 37828446 - 37828523
Alignment:
Q  59 gaaaattgttcttctcccaataaaaaacgttcactcccatataaactgaccaaaatactccccacgtgtgttaactcac 137  Q
    |||||||| ||||||||||| |||||||| |||||| |||| |||||||||||||||| || | |||| ||||||||||    
T  37828446 gaaaattgctcttctcccaacaaaaaacgatcactcacatacaaactgaccaaaatac-cctcgcgtgagttaactcac 37828523  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 4865739 - 4865682
Alignment:
Q  59 gaaaattgttcttctcccaataaaaaacgttcactcccatataaactgaccaaaatac 116  Q
    |||||||| ||| ||||||| |||||| ||||||||||||| ||||||||||||||||    
T  4865739 gaaaattgctctcctcccaacaaaaaatgttcactcccatacaaactgaccaaaatac 4865682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 29667569 - 29667626
Alignment:
Q  59 gaaaattgttcttctcccaataaaaaacgttcactcccatataaactgaccaaaatac 116  Q
    ||||| || ||||| ||||||||||| |||||||||||||| ||||| || |||||||    
T  29667569 gaaaactgctcttcacccaataaaaatcgttcactcccatacaaactaacaaaaatac 29667626  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 159
Target Start/End: Original strand, 34887855 - 34887924
Alignment:
Q  88 ttcactcccatataaactgaccaaaatactccccacgtgtgttaactcacattcggtaagataaagtataac 159  Q
    |||||||||||| ||||| |||||||||  ||||||||| ||||| |||| |||| |||| | |||||||||    
T  34887855 ttcactcccatacaaactaaccaaaata--ccccacgtgagttaattcacgttcgataagctgaagtataac 34887924  T

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Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 59 - 159
Target Start/End: Original strand, 1505543 - 1505643
Alignment:
Q  59 gaaaattgttcttctcccaataaaaaacgttcactcccatataaactgaccaaaatactccccacgtgtgttaactcacattcggtaagataaagtataa 158  Q
    |||||||| ||||||||||| |||||||||| |||||||||||||| ||||||||||| | ||| ||| ||||||||||||||| |||| | ||||||||    
T  1505543 gaaaattgctcttctcccaacaaaaaacgtttactcccatataaaccgaccaaaataccctccatgtgagttaactcacattcgataagctgaagtataa 1505642  T
Q  159 c 159  Q
    |    
T  1505643 c 1505643  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 59 - 147
Target Start/End: Complemental strand, 23457499 - 23457411
Alignment:
Q  59 gaaaattgttcttctcccaataaaaaacgttcactcccatataaactgaccaaaatactccccacgtgtgttaactcacattcggtaag 147  Q
    ||||||||||||||||| || |||||||| ||||||||||| ||||| ||||||||||   ||||||| ||||||||||||| ||||||    
T  23457499 gaaaattgttcttctccaaacaaaaaacgctcactcccataaaaacttaccaaaataccttccacgtgagttaactcacatttggtaag 23457411  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 59 - 147
Target Start/End: Original strand, 23533269 - 23533357
Alignment:
Q  59 gaaaattgttcttctcccaataaaaaacgttcactcccatataaactgaccaaaatactccccacgtgtgttaactcacattcggtaag 147  Q
    |||||||||||||||||||| |||||| | ||||||||||| ||||| |||||||||| | ||||||| |||||||||| || ||||||    
T  23533269 gaaaattgttcttctcccaacaaaaaatgctcactcccataaaaacttaccaaaatacccaccacgtgagttaactcacgtttggtaag 23533357  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 159
Target Start/End: Original strand, 23474929 - 23475029
Alignment:
Q  59 gaaaattgttcttctcccaataaaaaacgttcactcccatataaactgaccaaaatactccccacgtgtgttaactcacattcggtaagataaagtataa 158  Q
    |||||||||||||||||||| |||||||| || |||||||| ||| | |||||||||| | ||| ||| |||||||||| || |||||| | ||||||||    
T  23474929 gaaaattgttcttctcccaacaaaaaacgctctctcccataaaaatttaccaaaataccctccatgtgagttaactcacgtttggtaagttgaagtataa 23475028  T
Q  159 c 159  Q
    |    
T  23475029 c 23475029  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 59 - 125
Target Start/End: Original strand, 23443335 - 23443401
Alignment:
Q  59 gaaaattgttcttctcccaataaaaaacgttcactcccatataaactgaccaaaatactccccacgt 125  Q
    |||||||||||||||||||| |||||||| ||||||||||| ||||| | |||||||| | ||||||    
T  23443335 gaaaattgttcttctcccaacaaaaaacgctcactcccataaaaacttatcaaaataccctccacgt 23443401  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 2169322 - 2169266
Alignment:
Q  60 aaaattgttcttctcccaataaaaaacgttcactcccatataaactgaccaaaatac 116  Q
    ||||||| ||||||||||| |||||||| ||||||||||| |||| || ||||||||    
T  2169322 aaaattgctcttctcccaacaaaaaacgctcactcccatacaaaccgatcaaaatac 2169266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 127
Target Start/End: Complemental strand, 23534201 - 23534133
Alignment:
Q  59 gaaaattgttcttctcccaataaaaaacgttcactcccatataaactgaccaaaatactccccacgtgt 127  Q
    |||||||| ||||||||||| |||||| | |||||| |||| ||||| || ||||||| | ||||||||    
T  23534201 gaaaattgctcttctcccaacaaaaaatgctcactctcatacaaactaacaaaaatacccgccacgtgt 23534133  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 25921030 - 25921081
Alignment:
Q  58 tgaaaattgttcttctcccaataaaa--aacgttcactcccatataaactga 107  Q
    ||||||||||||||| ||||| ||||  |||||||||||||||| |||||||    
T  25921030 tgaaaattgttcttcacccaacaaaaaaaacgttcactcccatacaaactga 25921081  T

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Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 59 - 159
Target Start/End: Complemental strand, 17476268 - 17476169
Alignment:
Q  59 gaaaattgttcttctcccaataaaaaacgttcactcccatataaactgaccaaaatactccccacgtgtgttaactcacattcggtaagataaagtataa 158  Q
    |||||||||||||||||||| ||||||||||| ||| |||| |||||||||||||||| | ||||||| |||||||| | ||||||||| ||||||||||    
T  17476268 gaaaattgttcttctcccaacaaaaaacgttcgctctcatacaaactgaccaaaatac-ctccacgtgagttaactcgcgttcggtaagctaaagtataa 17476170  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 137
Target Start/End: Original strand, 7148294 - 7148360
Alignment:
Q  70 ttctcccaataaaaaacgttcactcccatataaactgaccaaaatactccccacgtgtgttaactcac 137  Q
    ||||||||| |||||| | ||||||||||| |||||||||||||||||||| ||||| ||||||||||    
T  7148294 ttctcccaacaaaaaa-gctcactcccatacaaactgaccaaaatactccctacgtgagttaactcac 7148360  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 59 - 137
Target Start/End: Original strand, 38299728 - 38299804
Alignment:
Q  59 gaaaattgttcttctcccaataaaaaacgttcactcccatataaactgaccaaaatactccccacgtgtgttaactcac 137  Q
    |||||||| ||||||||||| |||| ||||||||||||||| |||||||| |||||||| ||| |||| ||||||||||    
T  38299728 gaaaattgctcttctcccaa-aaaagacgttcactcccatacaaactgactaaaatact-cccgcgtgagttaactcac 38299804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 134
Target Start/End: Complemental strand, 38299953 - 38299874
Alignment:
Q  59 gaaaattgttcttctcccaataaaaaacgttcactcccata-----taaactgaccaaaatactccccacgtgtgttaact 134  Q
    |||||||| ||||||||||| |||||||| |||||| ||||     |||||||||||||||||  |||||||| |||||||    
T  38299953 gaaaattgctcttctcccaacaaaaaacgctcactcacatacaaattaaactgaccaaaatac-gcccacgtgagttaact 38299874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 41048646 - 41048694
Alignment:
Q  57 ttgaaaattgttcttctcccaataaaaaacgttcactcccatataaact 105  Q
    |||||||||| ||||||||||| ||||||||  |||||||||| |||||    
T  41048646 ttgaaaattgctcttctcccaacaaaaaacgcacactcccatacaaact 41048694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 57 - 147
Target Start/End: Original strand, 27630998 - 27631088
Alignment:
Q  57 ttgaaaattgttcttctcccaataaaaaacgttcactcccatataaactgaccaaaatactccccacgtgtgttaactcacattcggtaag 147  Q
    |||||||| | ||||||||||| |||||||| |||||||||||||||||||| |||| ||  |||||||| |||||||||| |||||||||    
T  27630998 ttgaaaatagctcttctcccaacaaaaaacgctcactcccatataaactgactaaaacacatcccacgtgagttaactcacgttcggtaag 27631088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 51249165 - 51249223
Alignment:
Q  57 ttgaaaattgttcttctcccaataaaaaacgttcactcccatataaactgaccaaaata 115  Q
    |||||||||| ||||||||||| |||| |||| ||||| ||||||||||||| ||||||    
T  51249165 ttgaaaattgctcttctcccaacaaaagacgtgcactctcatataaactgactaaaata 51249223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 147
Target Start/End: Complemental strand, 42175340 - 42175252
Alignment:
Q  59 gaaaattgttcttctcccaataaaaaacgttcactcccatataaactgaccaaaatactccccacgtgtgttaactcacattcggtaag 147  Q
    |||||||| ||||||||||| |||||||  ||||||||||| |||| || | |||||  | ||||||| ||||||||||  ||||||||    
T  42175340 gaaaattgctcttctcccaacaaaaaacactcactcccatacaaaccgatcgaaatatcctccacgtgagttaactcacgctcggtaag 42175252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 58 - 159
Target Start/End: Original strand, 30259605 - 30259706
Alignment:
Q  58 tgaaaattgttcttctcccaataaaaaacgttcactcccatataaactgaccaaaatactccccacgtgtgttaactcacattcggtaagataaagtata 157  Q
    |||||||||  |||| ||||| |||||||| |||||  |||| ||||||||||||||||||  |||||| |||||||||| |||||| |||| |||||||    
T  30259605 tgaaaattgcgcttcacccaacaaaaaacgatcactttcatacaaactgaccaaaatactcgtcacgtgagttaactcacgttcggtcagatgaagtata 30259704  T
Q  158 ac 159  Q
    ||    
T  30259705 ac 30259706  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 30259919 - 30259865
Alignment:
Q  62 aattgttcttctcccaataaaaaacgttcactcccatataaactgaccaaaatac 116  Q
    ||||| ||||||||||| |||||||| ||||||||||| ||||||| ||||||||    
T  30259919 aattgctcttctcccaacaaaaaacgctcactcccatacaaactgatcaaaatac 30259865  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 38421258 - 38421306
Alignment:
Q  68 tcttctcccaataaaaaacgttcactcccatataaactgaccaaaatac 116  Q
    ||||||||| | |||||||| | ||||||||||||||||| ||||||||    
T  38421258 tcttctcccgacaaaaaacgcttactcccatataaactgatcaaaatac 38421306  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 52236632 - 52236576
Alignment:
Q  89 tcactcccatataaactgaccaaaatactccccacgtgtgttaactcacattcggta 145  Q
    ||||||||| || ||||||||||||||||| | |  || ||||||||||||||||||    
T  52236632 tcactcccacatgaactgaccaaaatactctcaatttgagttaactcacattcggta 52236576  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 156
Target Start/End: Complemental strand, 34448526 - 34448430
Alignment:
Q  60 aaaattgttcttctcccaataaaaaacgttcactcccatataaactgaccaaaatactccccacgtgtgttaactcacattcggtaagataaagtat 156  Q
    ||||||| |||||||| || |||||||  |||| |||||| |||||||||||||||| |||||||||||||| ||||| || |||||| | ||||||    
T  34448526 aaaattgctcttctccaaacaaaaaacactcacgcccatacaaactgaccaaaataccccccacgtgtgttagctcacgtttggtaagctgaagtat 34448430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 159
Target Start/End: Complemental strand, 1706903 - 1706803
Alignment:
Q  59 gaaaattgttcttctcccaataaaaaacgttcactcccatataaactgaccaaaatactccccacgtgtgttaactcacattcggtaagataaagtataa 158  Q
    ||||| || ||||||||||| ||||||  ||||||| |||||||||||| |||| ||| | ||||||| |||||||||  ||||||||| | ||||||||    
T  1706903 gaaaactgctcttctcccaacaaaaaagattcactctcatataaactgatcaaagtaccctccacgtgagttaactcatgttcggtaagttgaagtataa 1706804  T
Q  159 c 159  Q
    |    
T  1706803 c 1706803  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 5449483 - 5449541
Alignment:
Q  57 ttgaaaattgttcttctcccaataaaaaa-cgttcactcccatataaactgaccaaaat 114  Q
    |||||||||| |||||||| || |||||| |||||||||||||| ||||||||||||||    
T  5449483 ttgaaaattgctcttctccaaacaaaaaagcgttcactcccatacaaactgaccaaaat 5449541  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 4974690 - 4974747
Alignment:
Q  58 tgaaaattgttcttctcccaataaaaaacgttcactcccatataaactgaccaaaata 115  Q
    ||||||||| |||||||  || |||||||| ||||| ||||| |||||||||||||||    
T  4974690 tgaaaattgctcttctcttaacaaaaaacgctcacttccatacaaactgaccaaaata 4974747  T

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Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 80 - 159
Target Start/End: Complemental strand, 53801585 - 53801506
Alignment:
Q  80 aaaaaacgttcactcccatataaactgaccaaaatactccccacgtgtgttaactcacattcggtaagataaagtataac 159  Q
    ||||||||||||||| || | |||||||||||||||||| ||||||| |||||||||| |||| |||| | |||||||||    
T  53801585 aaaaaacgttcactctcaaacaaactgaccaaaatactctccacgtgagttaactcacgttcgataagctgaagtataac 53801506  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 59 - 159
Target Start/End: Complemental strand, 12828655 - 12828554
Alignment:
Q  59 gaaaattgttcttctcccaat-aaaaaacgttcactcccatataaactgaccaaaatactccccacgtgtgttaactcacattcggtaagataaagtata 157  Q
    |||||||  |||||||||||  |||||| |||||||| |||| |||||||||||||||   | |||||| |||||||||| ||||||||||| |||||||    
T  12828655 gaaaatttctcttctcccaaccaaaaaatgttcactctcatacaaactgaccaaaatatctctcacgtgagttaactcacgttcggtaagatgaagtata 12828556  T
Q  158 ac 159  Q
    ||    
T  12828555 ac 12828554  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 59 - 120
Target Start/End: Complemental strand, 52074958 - 52074897
Alignment:
Q  59 gaaaattgttcttctcccaataaaaaacgttcactcccatataaactgaccaaaatactccc 120  Q
    |||||||| ||||||| || ||||||||| ||||| ||||||| || |||||||||||||||    
T  52074958 gaaaattgctcttctctcagtaaaaaacgctcacttccatatagaccgaccaaaatactccc 52074897  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 147
Target Start/End: Original strand, 26310235 - 26310300
Alignment:
Q  80 aaaaaacgttcactcccatataaactgaccaaaatactccccacgtgtgttaactcacattcggtaag 147  Q
    |||||| | ||||||||||| ||||||||||||||||||| ||  ||  ||||||||||||| |||||    
T  26310235 aaaaaatgctcactcccatacaaactgaccaaaatactccgca--tgaattaactcacattcagtaag 26310300  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 13706274 - 13706217
Alignment:
Q  59 gaaaattgttcttctcccaataaaaaacgttcactcccatataaactgaccaaaatac 116  Q
    |||||||| |||||| ||| ||||||||||||||||||||| ||||| ||||||||||    
T  13706274 gaaaattgctcttctaccattaaaaaacgttcactcccatacaaactaaccaaaatac 13706217  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 59 - 146
Target Start/End: Complemental strand, 1410783 - 1410698
Alignment:
Q  59 gaaaattgttcttctcccaataaaaaacgttcactcccatataaactgaccaaaatactccccacgtgtgttaactcacattcggtaa 146  Q
    |||||||| ||||||||||| |||||||  ||||| ||||||||||| | |||||||| | ||||||| |||||||||  ||||||||    
T  1410783 gaaaattgctcttctcccaa-aaaaaacactcactgccatataaactaatcaaaatac-ctccacgtgagttaactcatgttcggtaa 1410698  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 1410470 - 1410510
Alignment:
Q  59 gaaaattgttcttctcccaataaaaaacgttcactcccata 99  Q
    ||||||||||||||| |||| |||||||||||||| |||||    
T  1410470 gaaaattgttcttcttccaacaaaaaacgttcacttccata 1410510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 138
Target Start/End: Original strand, 29795754 - 29795833
Alignment:
Q  59 gaaaattgttcttctcccaataaaaaa-cgttcactcccatataaactgaccaaaatactccccacgtgtgttaactcaca 138  Q
    |||||||| ||||||| ||| |||||| |||| |||| |||| |||||||||||||||| | || |||| |||||||||||    
T  29795754 gaaaattgctcttctctcaacaaaaaaacgtttactctcatacaaactgaccaaaatac-ctccgcgtgagttaactcaca 29795833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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