View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11031_high_1 (Length: 678)
Name: NF11031_high_1
Description: NF11031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11031_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 12 - 561
Target Start/End: Original strand, 10468399 - 10468948
Alignment:
| Q |
12 |
cagagacaaaacatgtacacaaatttaacaagtgaacaaatcatacacacaatcacaatggtccctaaaaagttatcctacttcttcctttttcttcaaa |
111 |
Q |
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| T |
10468399 |
cagagacaaaacatgtacacaaatttaacaagtgaacaaatcatacacacaatcacaatggtccctaaaaagctatcctacttcttcctttttcttgaaa |
10468498 |
T |
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| Q |
112 |
taaacccattttcaatttctgactaacgtattacaaacccaaaaatataaatttttaactttttgtaaatatccaaattatcattgaaatggtgggtcta |
211 |
Q |
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| T |
10468499 |
taaacccattttcaatttctgactaatgtattacaaacccaaaaatataaattttgaactttttgtaaatatccaaattatcattgaaatggtgggtcta |
10468598 |
T |
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| Q |
212 |
tctactcaatcaaattatggatatacaaaaataattttaaaattgcaaaattataatcaagtttgtcttacaatagctcaataatattaaatagaaatga |
311 |
Q |
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| T |
10468599 |
tttactcgatcaaattatggatatacaaaaataattttaaaattgcaaaattataatcaaatttgacttacaatagctcaataatattaaatagaaatga |
10468698 |
T |
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| Q |
312 |
gattttctttttagaattgactctccaatttcaatggaaacaagactatgctaattcaaagttcgataaaaagataggtaaaatatattcgatgaaaaca |
411 |
Q |
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| T |
10468699 |
gattttctttttagaattgactctccaatttcaatggaaacaagactatgctaattcaaagtttgataaaaagataggtaaaatatattcgatgaaaaca |
10468798 |
T |
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| Q |
412 |
aaaccatgctgaaaagtgataatgcgaggctagcttgattccacaaattaagagtgaacaatacaccacctacctgccatttcaaaatcatgcagaatga |
511 |
Q |
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| T |
10468799 |
aaaccatgctgaaaagtgataatgcgaggctagcttgattccacaaattacgagtgaacaatacaccacctacctgccatttcaaaatcatgcagaatga |
10468898 |
T |
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| Q |
512 |
aatcaatggcgagttctaccggcgtcttaggagtcctaaaatagtaacag |
561 |
Q |
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| T |
10468899 |
aatcaatggcgagttctaccggcgtcttaggagtcctaaaatagtaacag |
10468948 |
T |
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