View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11031_high_4 (Length: 506)

Name: NF11031_high_4
Description: NF11031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11031_high_4
NF11031_high_4
[»] chr4 (14 HSPs)
chr4 (48-245)||(30610451-30610648)
chr4 (350-495)||(30610153-30610298)
chr4 (414-490)||(3803176-3803255)
chr4 (357-409)||(25092813-25092865)
chr4 (359-407)||(48339754-48339802)
chr4 (353-464)||(35657458-35657578)
chr4 (356-407)||(52305849-52305900)
chr4 (357-407)||(35318331-35318381)
chr4 (356-462)||(35658065-35658178)
chr4 (146-198)||(47297038-47297090)
chr4 (353-408)||(33960517-33960572)
chr4 (414-464)||(35317720-35317770)
chr4 (365-406)||(29099485-29099526)
chr4 (354-405)||(26341486-26341538)
[»] chr6 (4 HSPs)
chr6 (353-464)||(1825440-1825555)
chr6 (179-242)||(12383425-12383488)
chr6 (214-250)||(5179253-5179289)
chr6 (214-250)||(5281067-5281103)
[»] chr7 (10 HSPs)
chr7 (357-464)||(11698062-11698175)
chr7 (436-483)||(8691961-8692008)
chr7 (356-407)||(35779267-35779318)
chr7 (353-407)||(11697380-11697434)
chr7 (353-407)||(47362743-47362797)
chr7 (358-407)||(47361193-47361242)
chr7 (358-407)||(47362084-47362133)
chr7 (416-464)||(47362678-47362729)
chr7 (358-394)||(287566-287602)
chr7 (354-405)||(37034843-37034895)
[»] chr2 (8 HSPs)
chr2 (354-464)||(3130042-3130158)
chr2 (353-408)||(43992364-43992419)
chr2 (414-464)||(17369469-17369519)
chr2 (418-464)||(22899901-22899947)
chr2 (166-228)||(29181698-29181760)
chr2 (358-394)||(2200794-2200830)
chr2 (358-394)||(15602461-15602497)
chr2 (354-405)||(35112871-35112923)
[»] scaffold0983 (1 HSPs)
scaffold0983 (414-464)||(1856-1906)
[»] chr8 (4 HSPs)
chr8 (146-245)||(34411903-34411999)
chr8 (356-407)||(42104441-42104492)
chr8 (356-395)||(42104510-42104549)
chr8 (356-408)||(35750973-35751025)
[»] chr3 (7 HSPs)
chr3 (360-464)||(7725569-7725678)
chr3 (357-464)||(7724008-7724121)
chr3 (414-493)||(29255741-29255823)
chr3 (356-407)||(23707181-23707232)
chr3 (356-407)||(23725637-23725688)
chr3 (356-407)||(23744093-23744144)
chr3 (356-407)||(23773769-23773820)
[»] scaffold0091 (1 HSPs)
scaffold0091 (357-408)||(2800-2851)
[»] chr5 (6 HSPs)
chr5 (357-409)||(30667406-30667458)
chr5 (355-395)||(35272056-35272096)
chr5 (360-407)||(10143127-10143174)
chr5 (357-402)||(7120882-7120927)
chr5 (365-406)||(14394702-14394743)
chr5 (354-405)||(2312988-2313040)
[»] chr1 (1 HSPs)
chr1 (357-408)||(26779700-26779751)


Alignment Details
Target: chr4 (Bit Score: 174; Significance: 2e-93; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 48 - 245
Target Start/End: Complemental strand, 30610648 - 30610451
Alignment:
Q  48 acttttgaatcggcatgcatttacttttccatcttcagagagggaattctctcaattggattcctctcaattttctttttcaattgtatcatcttaagtc 147  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  30610648 acttttgaatcggcatgcatttacttttccatcttcagaaagggaattctctcaattggattcctctcaattttttttttcaattgtatcatcttaagtc 30610549  T
Q  148 ttaaccatcaaacacgagagagaaaattagcaataaaattataaagaaatgatagattcaatttaatggttgagatgcaacaattgagaaaaattgag 245  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||    
T  30610548 ttaaccatcaaacacgagagagaaaattagaaataaaattataaagaaatgatagattgaatttaatggttcagatacaacaattgagaaaaattgag 30610451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 350 - 495
Target Start/End: Complemental strand, 30610298 - 30610153
Alignment:
Q  350 atatatatgagaatgattatcaaccattagatcaaaaatagatggtcgagattaaaaaagtgttcctcaccttattatatcaattatcataaactcattt 449  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  30610298 atatatatgagaatgattatccaccattagatcaaaaatagatggttgagattaaaaaagtgtacctcaccttattatatcaattatcataaactcattt 30610199  T
Q  450 cctttttcatcttctccccacaatcagaatttttgctaccatctct 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  30610198 cctttttcatcttctccccacaatcagaatttttgctaccatctct 30610153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 414 - 490
Target Start/End: Original strand, 3803176 - 3803255
Alignment:
Q  414 cctcaccttattatatcaattatcataaactcatttcctttttcat---cttctccccacaatcagaatttttgctacca 490  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||   ||||||||||||||||  |||| ||||||||    
T  3803176 cctcaccttattatatcaattctcataaactcatttcccttttcatctacttctccccacaatcaagatttgtgctacca 3803255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 409
Target Start/End: Complemental strand, 25092865 - 25092813
Alignment:
Q  357 tgagaatgattatcaaccattagatcaaaaatagatggtcgagattaaaaaag 409  Q
    ||||||||||||| |||||||||||||||||| |||| | |||||||||||||    
T  25092865 tgagaatgattattaaccattagatcaaaaatggatgattgagattaaaaaag 25092813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 407
Target Start/End: Complemental strand, 48339802 - 48339754
Alignment:
Q  359 agaatgattatcaaccattagatcaaaaatagatggtcgagattaaaaa 407  Q
    |||||||| |||||||||||||||| ||||||||||| |||||||||||    
T  48339802 agaatgatcatcaaccattagatcataaatagatggttgagattaaaaa 48339754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 353 - 464
Target Start/End: Original strand, 35657458 - 35657578
Alignment:
Q  353 tatatgagaatgattatcaaccattagatcaaaaatagatggtcgagattaaaaaag------tgttcctcaccttattatatcaa---ttatcataaac 443  Q
    |||||||||||||| |||| ||||||||| ||||||| ||||| ||||||||||| |      |||| || |||||||||||||||   || | |||||     
T  35657458 tatatgagaatgatcatcatccattagataaaaaataaatggttgagattaaaaaggcacatatgttgcttaccttattatatcaattcttcttataaat 35657557  T
Q  444 tcatttcctttttcatcttct 464  Q
    |||||||| ||||||||||||    
T  35657558 tcatttcccttttcatcttct 35657578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 356 - 407
Target Start/End: Original strand, 52305849 - 52305900
Alignment:
Q  356 atgagaatgattatcaaccattagatcaaaaatagatggtcgagattaaaaa 407  Q
    ||||||||||| |||||||||||||| ||||||| ||||| |||||||||||    
T  52305849 atgagaatgatcatcaaccattagattaaaaataaatggttgagattaaaaa 52305900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 407
Target Start/End: Complemental strand, 35318381 - 35318331
Alignment:
Q  357 tgagaatgattatcaaccattagatcaaaaatagatggtcgagattaaaaa 407  Q
    |||||||||| |||||||||||||| ||||||| ||||| |||||||||||    
T  35318381 tgagaatgatcatcaaccattagattaaaaataaatggttgagattaaaaa 35318331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 462
Target Start/End: Complemental strand, 35658178 - 35658065
Alignment:
Q  356 atgagaatgattatcaaccattagatcaaaaatagatggtcgagattaaaaaag------tgttcctcaccttattatatcaattatcataaactcattt 449  Q
    ||||||||||| |||| |  |||||||||||||| ||||  ||||||||||| |      ||||||| ||||||||||||||||| | ||||| ||||||    
T  35658178 atgagaatgatcatcacctgttagatcaaaaataaatggctgagattaaaaaggcacatatgttccttaccttattatatcaatttttataaattcattt 35658079  T
Q  450 -cctttttcatctt 462  Q
     |||||||||||||    
T  35658078 ccctttttcatctt 35658065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 198
Target Start/End: Original strand, 47297038 - 47297090
Alignment:
Q  146 tcttaaccatcaaacacgagagagaaaattagcaataaaattataaagaaatg 198  Q
    |||||||||||||||| || ||||||||| || ||||||||||| ||||||||    
T  47297038 tcttaaccatcaaacatgaaagagaaaatgaggaataaaattatgaagaaatg 47297090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 408
Target Start/End: Complemental strand, 33960572 - 33960517
Alignment:
Q  353 tatatgagaatgattatcaaccattagatcaaaaatagatggtcgagattaaaaaa 408  Q
    |||||||||||||||||||||||| ||||||||| || ||| |  |||||||||||    
T  33960572 tatatgagaatgattatcaaccatcagatcaaaattaaatgattcagattaaaaaa 33960517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 414 - 464
Target Start/End: Original strand, 35317720 - 35317770
Alignment:
Q  414 cctcaccttattatatcaattatcataaactcatttcctttttcatcttct 464  Q
    |||||| |||||||||||||| |||| || |||||||| ||||||||||||    
T  35317720 cctcactttattatatcaattttcatgaattcatttcccttttcatcttct 35317770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 406
Target Start/End: Original strand, 29099485 - 29099526
Alignment:
Q  365 attatcaaccattagatcaaaaatagatggtcgagattaaaa 406  Q
    |||||||||||||||||||||| |||||| | ||||||||||    
T  29099485 attatcaaccattagatcaaaagtagatgatggagattaaaa 29099526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 405
Target Start/End: Original strand, 26341486 - 26341538
Alignment:
Q  354 atatgagaatgatt-atcaaccattagatcaaaaatagatggtcgagattaaa 405  Q
    ||||||||||| || |||| ||||||||| ||||||||||||| |||||||||    
T  26341486 atatgagaatgttttatcagccattagattaaaaatagatggttgagattaaa 26341538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 353 - 464
Target Start/End: Complemental strand, 1825555 - 1825440
Alignment:
Q  353 tatatgagaatgattatcaaccattagatcaaaaatagatggtcgagattaaaaaag----tgttcctcaccttattatatcaattatcataaactcatt 448  Q
    |||||||||||||||||||||||||||||  |||||| ||||| || ||||||||      | | ||||||||||||| ||||||| |||||||||||||    
T  1825555 tatatgagaatgattatcaaccattagattcaaaataaatggttgacattaaaaagtcacatatacctcaccttattagatcaattctcataaactcatt 1825456  T
Q  449 tcctttttcatcttct 464  Q
    ||||||||||||||||    
T  1825455 tcctttttcatcttct 1825440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 12383488 - 12383425
Alignment:
Q  179 aataaaattataaagaaatgatagattcaatttaatggttgagatgcaacaattgagaaaaatt 242  Q
    |||||||||| |||||||||||||||| ||||| |||||||||||||||||||||| |||||||    
T  12383488 aataaaattaaaaagaaatgatagattgaatttgatggttgagatgcaacaattgaaaaaaatt 12383425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 214 - 250
Target Start/End: Complemental strand, 5179289 - 5179253
Alignment:
Q  214 tggttgagatgcaacaattgagaaaaattgagtgaat 250  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  5179289 tggttgagatgtaacaattgagaaaaattgagagaat 5179253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 214 - 250
Target Start/End: Complemental strand, 5281103 - 5281067
Alignment:
Q  214 tggttgagatgcaacaattgagaaaaattgagtgaat 250  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  5281103 tggttgagatgtaacaattgagaaaaattgagagaat 5281067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 357 - 464
Target Start/End: Complemental strand, 11698175 - 11698062
Alignment:
Q  357 tgagaatgattatcaaccattagatcaaaaatagatggtcgagattaaaaaa------gtgttcctcaccttattatatcaattatcataaactcatttc 450  Q
    |||||||||| ||||| |||||||||||||||| ||||| ||||||||||||       ||| ||||| ||||||| ||||||| |||||||||||||||    
T  11698175 tgagaatgatcatcaatcattagatcaaaaataaatggttgagattaaaaaatcacctatgtacctcaacttattacatcaattctcataaactcatttc 11698076  T
Q  451 ctttttcatcttct 464  Q
    | ||||||| ||||    
T  11698075 cattttcattttct 11698062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 436 - 483
Target Start/End: Original strand, 8691961 - 8692008
Alignment:
Q  436 tcataaactcatttcctttttcatcttctccccacaatcagaattttt 483  Q
    |||||||||||||||| ||||||||||||||  |||||||||||||||    
T  8691961 tcataaactcatttcccttttcatcttctcctgacaatcagaattttt 8692008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 356 - 407
Target Start/End: Original strand, 35779267 - 35779318
Alignment:
Q  356 atgagaatgattatcaaccattagatcaaaaatagatggtcgagattaaaaa 407  Q
    |||||||| ||||||||||||| |||||||||||||| || |||||||||||    
T  35779267 atgagaataattatcaaccattcgatcaaaaatagatagttgagattaaaaa 35779318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 407
Target Start/End: Original strand, 11697380 - 11697434
Alignment:
Q  353 tatatgagaatgattatcaaccattagatcaaaaatagatggtcgagattaaaaa 407  Q
    |||||||||||||| |||||  ||||||||||||||| ||||| |||||||||||    
T  11697380 tatatgagaatgatcatcaattattagatcaaaaataaatggttgagattaaaaa 11697434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 407
Target Start/End: Complemental strand, 47362797 - 47362743
Alignment:
Q  353 tatatgagaatgattatcaaccattagatcaaaaatagatggtcgagattaaaaa 407  Q
    |||||||||||||| |||||||| ||||||||||||| ||| | |||||||||||    
T  47362797 tatatgagaatgatcatcaaccactagatcaaaaataaatgattgagattaaaaa 47362743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 358 - 407
Target Start/End: Complemental strand, 47361242 - 47361193
Alignment:
Q  358 gagaatgattatcaaccattagatcaaaaatagatggtcgagattaaaaa 407  Q
    ||||||||| |||||| ||||||||||||||||||||| |||||| ||||    
T  47361242 gagaatgatcatcaactattagatcaaaaatagatggttgagattgaaaa 47361193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 358 - 407
Target Start/End: Original strand, 47362084 - 47362133
Alignment:
Q  358 gagaatgattatcaaccattagatcaaaaatagatggtcgagattaaaaa 407  Q
    ||||||||| |||||| ||||||||||||||||||||| |||||| ||||    
T  47362084 gagaatgatcatcaactattagatcaaaaatagatggttgagattgaaaa 47362133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 464
Target Start/End: Complemental strand, 47362729 - 47362678
Alignment:
Q  416 tcaccttattat---atcaattatcataaactcatttcctttttcatcttct 464  Q
    ||||||||||||   ||||||| |||||||||||||||| ||||||||||||    
T  47362729 tcaccttattattacatcaattctcataaactcatttcccttttcatcttct 47362678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 394
Target Start/End: Complemental strand, 287602 - 287566
Alignment:
Q  358 gagaatgattatcaaccattagatcaaaaatagatgg 394  Q
    |||||||| | ||||||||||||||||||||||||||    
T  287602 gagaatgaatctcaaccattagatcaaaaatagatgg 287566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 405
Target Start/End: Original strand, 37034843 - 37034895
Alignment:
Q  354 atatgagaatgatt-atcaaccattagatcaaaaatagatggtcgagattaaa 405  Q
    ||||||||||| || |||| ||||||||| ||||||||||||| |||||||||    
T  37034843 atatgagaatgttttatcagccattagattaaaaatagatggttgagattaaa 37034895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 354 - 464
Target Start/End: Complemental strand, 3130158 - 3130042
Alignment:
Q  354 atatgagaatgattatcaaccattagatcaaaaatagatggtcgagattaaaaa-ag-----tgttcctcaccttattatatcaattatcataaactcat 447  Q
    ||||||||||| |||||||||||| |||| |||||||||||| ||||||||||| ||     ||  ||| ||| ||||||||||||| | ||||||||||    
T  3130158 atatgagaatgcttatcaaccattcgatctaaaatagatggttgagattaaaaatagacacatgcaccttaccctattatatcaattctaataaactcat 3130059  T
Q  448 ttcctttttcatcttct 464  Q
    |||| ||||||||||||    
T  3130058 ttcccttttcatcttct 3130042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 353 - 408
Target Start/End: Original strand, 43992364 - 43992419
Alignment:
Q  353 tatatgagaatgattatcaaccattagatcaaaaatagatggtcgagattaaaaaa 408  Q
    |||||||||||||| |||||||||||||||||||||| ||||  ||||||||||||    
T  43992364 tatatgagaatgatcatcaaccattagatcaaaaataaatggctgagattaaaaaa 43992419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 414 - 464
Target Start/End: Original strand, 17369469 - 17369519
Alignment:
Q  414 cctcaccttattatatcaattatcataaactcatttcctttttcatcttct 464  Q
    ||||| ||||| | |||| || |||||||||||||||||||||||||||||    
T  17369469 cctcatcttatcacatcatttctcataaactcatttcctttttcatcttct 17369519  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 418 - 464
Target Start/End: Complemental strand, 22899947 - 22899901
Alignment:
Q  418 accttattatatcaattatcataaactcatttcctttttcatcttct 464  Q
    ||||||||| ||||||| |||||||||||||| | ||||||||||||    
T  22899947 accttattacatcaattctcataaactcattttccttttcatcttct 22899901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 228
Target Start/End: Complemental strand, 29181760 - 29181698
Alignment:
Q  166 agagaaaattagcaataaaattataaagaaatgatagattcaatttaatggttgagatgcaac 228  Q
    ||||| ||| || |||||||||||||| |||| | ||||| ||||| ||||||||||||||||    
T  29181760 agagacaataagaaataaaattataaaaaaataagagattgaatttgatggttgagatgcaac 29181698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 394
Target Start/End: Original strand, 2200794 - 2200830
Alignment:
Q  358 gagaatgattatcaaccattagatcaaaaatagatgg 394  Q
    |||||||| | ||||||||||||||||||||||||||    
T  2200794 gagaatgaatctcaaccattagatcaaaaatagatgg 2200830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 394
Target Start/End: Complemental strand, 15602497 - 15602461
Alignment:
Q  358 gagaatgattatcaaccattagatcaaaaatagatgg 394  Q
    |||||||| | ||||||||||||||||||||||||||    
T  15602497 gagaatgaatctcaaccattagatcaaaaatagatgg 15602461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 405
Target Start/End: Original strand, 35112871 - 35112923
Alignment:
Q  354 atatgagaatgatt-atcaaccattagatcaaaaatagatggtcgagattaaa 405  Q
    ||||||||||| || |||| ||||||||| ||||||||||||| |||||||||    
T  35112871 atatgagaatgttttatcagccattagattaaaaatagatggttgagattaaa 35112923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0983 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0983
Description:

Target: scaffold0983; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 414 - 464
Target Start/End: Complemental strand, 1906 - 1856
Alignment:
Q  414 cctcaccttattatatcaattatcataaactcatttcctttttcatcttct 464  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  1906 cctcaccttattatatcaattctcataaactcatttccttttttatcttct 1856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 146 - 245
Target Start/End: Complemental strand, 34411999 - 34411903
Alignment:
Q  146 tcttaaccatcaaacacgagagagaaaattagcaataaaattataaagaaatgatagattcaatttaatggttgagatgcaacaattgagaaaaattgag 245  Q
    |||||||||||||||| |||||||||||| ||  | ||||| |||||||||||| ||||| || || |||||| ||||| ||||||| ||||||||||||    
T  34411999 tcttaaccatcaaacatgagagagaaaatgag--aaaaaataataaagaaatgagagatttaa-ttgatggtttagatgtaacaattaagaaaaattgag 34411903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 356 - 407
Target Start/End: Original strand, 42104441 - 42104492
Alignment:
Q  356 atgagaatgattatcaaccattagatcaaaaatagatggtcgagattaaaaa 407  Q
    |||||||||||||||||||||||||||||||||| ||||| | |||||||||    
T  42104441 atgagaatgattatcaaccattagatcaaaaataaatggttgtgattaaaaa 42104492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 395
Target Start/End: Complemental strand, 42104549 - 42104510
Alignment:
Q  356 atgagaatgattatcaaccattagatcaaaaatagatggt 395  Q
    |||||||||||||||||| ||||||||||||||| |||||    
T  42104549 atgagaatgattatcaactattagatcaaaaataaatggt 42104510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 408
Target Start/End: Original strand, 35750973 - 35751025
Alignment:
Q  356 atgagaatgattatcaaccattagatcaaaaatagatggtcgagattaaaaaa 408  Q
    ||||||||||||||  |||||||||| ||||||||||| | |||||| |||||    
T  35750973 atgagaatgattatggaccattagattaaaaatagatgattgagatttaaaaa 35751025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 360 - 464
Target Start/End: Complemental strand, 7725678 - 7725569
Alignment:
Q  360 gaatgattatcaaccattagatcaaaaatagatggtcgagattaaaaaag------tgttcctcaccttattatatcaattatcataaactcatttcctt 453  Q
    ||||||| |||||||||||||||||||||| ||||| |||||||||||        ||  |||||| |||||||||||||| ||||||| |||||||| |    
T  7725678 gaatgatcatcaaccattagatcaaaaata-atggttgagattaaaaagtcacatatgcacctcactttattatatcaattctcataaattcatttccct 7725580  T
Q  454 tttcatcttct 464  Q
    |||||||||||    
T  7725579 tttcatcttct 7725569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 357 - 464
Target Start/End: Original strand, 7724008 - 7724121
Alignment:
Q  357 tgagaatgattatcaaccattagatcaaaaatagatggtcgagattaaaa------aagtgttcctcaccttattatatcaattatcataaactcatttc 450  Q
    |||||||||| ||||||||||||||||| |||| ||||| ||||||||||      |  ||| | |||| ||||||||| |||| ||||||| |||||||    
T  7724008 tgagaatgatcatcaaccattagatcaataataaatggttgagattaaaaagtcacatatgtacttcactttattatataaattctcataaattcatttc 7724107  T
Q  451 ctttttcatcttct 464  Q
    | ||||||||||||    
T  7724108 ccttttcatcttct 7724121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 414 - 493
Target Start/End: Complemental strand, 29255823 - 29255741
Alignment:
Q  414 cctcaccttattatatcaattatcataaactcatttcctttttca---tcttctccccacaatcagaatttttgctaccatct 493  Q
    |||| ||||||||||| ||||  ||||||||||||| ||||||||   |||||| |||||||||| ||||| |||||||||||    
T  29255823 cctctccttattatataaattcacataaactcatttactttttcatgttcttcttcccacaatcaaaatttctgctaccatct 29255741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 356 - 407
Target Start/End: Complemental strand, 23707232 - 23707181
Alignment:
Q  356 atgagaatgattatcaaccattagatcaaaaatagatggtcgagattaaaaa 407  Q
    |||||||| ||||||||||||||||| ||||||| ||||| |||||||||||    
T  23707232 atgagaataattatcaaccattagataaaaaatatatggttgagattaaaaa 23707181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 356 - 407
Target Start/End: Complemental strand, 23725688 - 23725637
Alignment:
Q  356 atgagaatgattatcaaccattagatcaaaaatagatggtcgagattaaaaa 407  Q
    |||||||| ||||||||||||||||| ||||||| ||||| |||||||||||    
T  23725688 atgagaataattatcaaccattagataaaaaatatatggttgagattaaaaa 23725637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 356 - 407
Target Start/End: Complemental strand, 23744144 - 23744093
Alignment:
Q  356 atgagaatgattatcaaccattagatcaaaaatagatggtcgagattaaaaa 407  Q
    |||||||| ||||||||||||||||| ||||||| ||||| |||||||||||    
T  23744144 atgagaataattatcaaccattagataaaaaatatatggttgagattaaaaa 23744093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 356 - 407
Target Start/End: Complemental strand, 23773820 - 23773769
Alignment:
Q  356 atgagaatgattatcaaccattagatcaaaaatagatggtcgagattaaaaa 407  Q
    |||||||| ||||||||||||||||| ||||||| ||||| |||||||||||    
T  23773820 atgagaataattatcaaccattagataaaaaatatatggttgagattaaaaa 23773769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 357 - 408
Target Start/End: Original strand, 2800 - 2851
Alignment:
Q  357 tgagaatgattatcaaccattagatcaaaaatagatggtcgagattaaaaaa 408  Q
    ||||||||||||| |||||||||||||||||| ||||| ||||||| |||||    
T  2800 tgagaatgattatgaaccattagatcaaaaatggatggccgagatttaaaaa 2851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 409
Target Start/End: Complemental strand, 30667458 - 30667406
Alignment:
Q  357 tgagaatgattatcaaccattagatcaaaaatagatggtcgagattaaaaaag 409  Q
    |||||||| |||| |||||||||||||||||| |||| | |||||||||||||    
T  30667458 tgagaatgtttattaaccattagatcaaaaatggatgattgagattaaaaaag 30667406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 395
Target Start/End: Original strand, 35272056 - 35272096
Alignment:
Q  355 tatgagaatgattatcaaccattagatcaaaaatagatggt 395  Q
    ||||||||||||||| |||||||||||| ||||||||||||    
T  35272056 tatgagaatgattataaaccattagatctaaaatagatggt 35272096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 407
Target Start/End: Complemental strand, 10143174 - 10143127
Alignment:
Q  360 gaatgattatcaaccattagatcaaaaatagatggtcgagattaaaaa 407  Q
    |||| ||||||||| ||||||| ||||||||||||| |||||||||||    
T  10143174 gaataattatcaactattagattaaaaatagatggttgagattaaaaa 10143127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 402
Target Start/End: Complemental strand, 7120927 - 7120882
Alignment:
Q  357 tgagaatgattatcaaccattagatcaaaaatagatggtcgagatt 402  Q
    |||||||||| ||||||||| | |||||||||||||||| ||||||    
T  7120927 tgagaatgatcatcaaccatcatatcaaaaatagatggttgagatt 7120882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 406
Target Start/End: Original strand, 14394702 - 14394743
Alignment:
Q  365 attatcaaccattagatcaaaaatagatggtcgagattaaaa 406  Q
    |||||||| |||||||| ||||||||||||| ||||||||||    
T  14394702 attatcaatcattagataaaaaatagatggttgagattaaaa 14394743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 405
Target Start/End: Original strand, 2312988 - 2313040
Alignment:
Q  354 atatgagaatgatt-atcaaccattagatcaaaaatagatggtcgagattaaa 405  Q
    ||||||||||| || |||| ||||||||| ||||||||||||| |||||||||    
T  2312988 atatgagaatgttttatcagccattagattaaaaatagatggttgagattaaa 2313040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 408
Target Start/End: Complemental strand, 26779751 - 26779700
Alignment:
Q  357 tgagaatgattatcaaccattagatcaaaaatagatggtcgagattaaaaaa 408  Q
    ||||||||||||| |||||||||||||||||| |||||  |||||| |||||    
T  26779751 tgagaatgattatgaaccattagatcaaaaatggatggctgagatttaaaaa 26779700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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