View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11031_low_3 (Length: 543)
Name: NF11031_low_3
Description: NF11031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11031_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 54 - 494
Target Start/End: Original strand, 36463042 - 36463490
Alignment:
| Q |
54 |
tggcatgcttaaaaacctgtttggaaatcataagcttcttgctactgctactagaaataatctcaactataatctgtgaaatagcagttctcccatttac |
153 |
Q |
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| T |
36463042 |
tggcatgcttaaaaacctgtttggaaatcagaagcttcttgctactgctactaaaaataatctcaactataatctatgaaatagcagttctcccatttac |
36463141 |
T |
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| Q |
154 |
tagaaagaaatggagtattatataataaatgcttctgttaaattttatttttctaaatacaaaatactaaacccttagttaaatcttaatacacatacta |
253 |
Q |
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| T |
36463142 |
tagaaagaaatggagtattatataataaatgcttctgttaaattttatttttctaaatac-caatactaaacccttagttaaatcttaatgcacatacta |
36463240 |
T |
|
| Q |
254 |
tcaccttttcaattgacataggtgtatacaat---taatatcatgcatcgaccacttttttgcaatctattatagcgcattatgcaagcctcatgcttca |
350 |
Q |
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| T |
36463241 |
tcaccttttcaattgacataggtgtatacaattaataatatcatgcatcaaccatttttttgcaatctattatagcgcattatgcaagcctcaagcttca |
36463340 |
T |
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| Q |
351 |
tattatgttgcctcaagattcatatgacaccaattcctccttgccataacaaaacaatctta------atcatcatctctcgcatatatcacaatgctct |
444 |
Q |
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| T |
36463341 |
tattatattgccttaagattcatatgacaacaattcttccttgccacaacaaaacaatcttaatcatcatcatcatctctcgcagatatcacaatgctct |
36463440 |
T |
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| Q |
445 |
atatttatcttgctaatttaaaacaatcatctgcctacttgctcatgatt |
494 |
Q |
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| T |
36463441 |
atatttgtcttcctaatttaaaacaatcatctgcctacttgctcatgatt |
36463490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 355
Target Start/End: Original strand, 40884627 - 40884672
Alignment:
| Q |
310 |
ttgcaatctattatagcgcattatgcaagcctcatgcttcatatta |
355 |
Q |
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| T |
40884627 |
ttgcaacctattatagcccattatgcaagcctcatgcttcatatta |
40884672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 355
Target Start/End: Original strand, 40910688 - 40910733
Alignment:
| Q |
310 |
ttgcaatctattatagcgcattatgcaagcctcatgcttcatatta |
355 |
Q |
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| T |
40910688 |
ttgcaacctattatagcccattatgcaagcctcatgcttcatatta |
40910733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 355
Target Start/End: Complemental strand, 40911275 - 40911230
Alignment:
| Q |
310 |
ttgcaatctattatagcgcattatgcaagcctcatgcttcatatta |
355 |
Q |
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| T |
40911275 |
ttgcaacctattatagcccattatgcaagcctcatgcttcatatta |
40911230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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