View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11031_low_6 (Length: 486)
Name: NF11031_low_6
Description: NF11031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11031_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 11 - 471
Target Start/End: Complemental strand, 34335741 - 34335281
Alignment:
| Q |
11 |
cacagatatcatcactacctgctcaaattcaagttnnnnnnn-tgtaatttctccaaaaccaatcatataacatttgtgttcgttgagttcgattttgat |
109 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34335741 |
cacaaatatcatcactacctgctcaaattcaagttaaaaaaaatgtaatttctccaaaaccaatcatataacatttgtgttcgttgagttcgattttgat |
34335642 |
T |
|
| Q |
110 |
tcggattaagatacaacttgcatgtatcatgtgatacctaacatttcaagaatgaaattactcacatgcagctaactctatttgtgtctggtagataaat |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34335641 |
tcggattaagatacaacttgcatgtatcatgtgatacctaacatt-caagaatggaattactcacatgcagctaactctatttgcgtctggtagataaat |
34335543 |
T |
|
| Q |
210 |
tccaaaactgctgaaatatctttctcaaacttaagaaacggtccattagggaactccatctttctcagtttacatagtccctcccctaactccatcatag |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34335542 |
tccaaaactgctgaaatatctttctcaaacttaagaaacggtccattagggaactccatctttctcagtttacatagtccctcccctaactccatcatag |
34335443 |
T |
|
| Q |
310 |
ctcctttatgattctatattcagcacatgaacagattttatttaatttgaacaataatacataatccaaataaaatgaaaactaataacaagacaagtaa |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34335442 |
ctcctttatgattctatattcagcacatgaacagattttatttaatttgaacaataatacataatccaaataaaatgaaaactaataacaagacaagtaa |
34335343 |
T |
|
| Q |
410 |
tattgaaaacctgattgaataggtgatgaaatccaactgcacattgcagtattccatgaatt |
471 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34335342 |
tattgaaaacctgattgaataggtgatgaaatccaactgcacattgcagtattccatgaatt |
34335281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University