View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11031_low_7 (Length: 379)
Name: NF11031_low_7
Description: NF11031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11031_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 10 - 356
Target Start/End: Original strand, 45595276 - 45595622
Alignment:
| Q |
10 |
agaagcaaaggcaaacattagggataatgaattacaaaattaattcatctgcttaggagagaaagagaggctcacctatctggagaaatggttcttcctc |
109 |
Q |
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| T |
45595276 |
agaagcaaaggcaaacattagggataatgaattacaaaattaattcatctgcttaggagagaaagagaggctcacctatctggagaaatggttcttcctc |
45595375 |
T |
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| Q |
110 |
tcccaagaaaacgacgatggccttcaaccgctcgcgccatgttgccagggtaagaatgtacaaatacatcactttcaacagatacaatatagtcaagagc |
209 |
Q |
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| T |
45595376 |
tcccaagaaaacgacgatggccttcaaccgctcgcgccatgttgccagggtaagaatgtacaaatacatcactttcaacagatacaatatagtcaagagc |
45595475 |
T |
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| Q |
210 |
agccatttgcgacgcatgattagaaaatggttcaagctcttcaatagatgccaacttttcctgatattagttacatgtagattaaataagaaaccagttc |
309 |
Q |
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| T |
45595476 |
agccatttgcgacgcatgattagaaaatggttcaagctcttcaatagatgccaacttttcctgatattagttacatgtagattaaataagaaaccagttc |
45595575 |
T |
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| Q |
310 |
aaacaatgctttatcaatcttcattcaccaagaaacaacaataaagt |
356 |
Q |
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| T |
45595576 |
aaacaatgctttatcaatcttcattcaccaagaaacaacaataaagt |
45595622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 112 - 278
Target Start/End: Original strand, 27148951 - 27149117
Alignment:
| Q |
112 |
ccaagaaaacgacgatggccttcaaccgctcgcgccatgttgccagggtaagaatgtacaaatacatcactttcaacagatacaatatagtcaagagcag |
211 |
Q |
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| T |
27148951 |
ccaagaaaacggcgatgaccttcaacagcccttgccatgtttccagaataagagggtataaatacatcactctcgatagatacaatatagtcaagagcag |
27149050 |
T |
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| Q |
212 |
ccatttgcgacgcatgattagaaaatggttcaagctcttcaatagatgccaacttttcctgatatta |
278 |
Q |
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| T |
27149051 |
ccatttgagaagcatgattaaaaaagggttcaagctcctcaatggatgccaacgtttcctgaaatta |
27149117 |
T |
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