View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11032_high_1 (Length: 498)
Name: NF11032_high_1
Description: NF11032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11032_high_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 8 - 498
Target Start/End: Original strand, 29068258 - 29068750
Alignment:
| Q |
8 |
agcacagaggggaggggaagtccaaaccgtccataggatcgtcatcttcatgttgaatgggaccacactcagctaaaatatcggtatcgaaatgccatgt |
107 |
Q |
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|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29068258 |
agcacaaaggggaggggaattccaaaccgtccataggatcgtcatcttcatgttgaatgggaccacactcagctaaaatatcggtatcgaaatgccatgt |
29068357 |
T |
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| Q |
108 |
gaaccacaaaccatgaaatgtaacgttatannnnnnnn--caaaaaca--aatacannnnnnnagtaataataattaatgaagaattgtaccaattaatg |
203 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |||||| ||||||||| |||||||||||||||||||||| |
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| T |
29068358 |
gaaccacaaaccatgaaatgtaacgttatattttttttttcaaaaacataaatacatttttttagtaataat------tgaagaattgtaccaattaatg |
29068451 |
T |
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| Q |
204 |
aaggtggtactactaataaattgcagtnnnnnnncaacatgagacagaactgtcagt----actcaacaactcagtgatnnnnnnnnnnnnnnnnntgta |
299 |
Q |
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||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||| |||| |
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| T |
29068452 |
aaggtggtactactaataaattgcagtaaaaaaacaacatgtgacagaactgtcagtcagtactcaacaactcagtgataaaaaaatttgaaaaaatgta |
29068551 |
T |
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| Q |
300 |
acaagtaacaactctatgtagatgatacatatgattgagaatcaaatctagtattattcattcttcaatctcaaccttcaaaactaacnnnnnnncaaac |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
29068552 |
acaagtaacaactctatgtagatgatacatatgattgagaatcaaatctagtactattcattcttcaatctcaaccttcaaaactaacaaaaaaacaaac |
29068651 |
T |
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| Q |
400 |
acaaatgtctcaaccttttgtgttaatctctatttacattattaccatgcaactaactattctattttcaccatccacttctcattactcttctccatc |
498 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29068652 |
acaaatgtctcaaccttttgtgttaatctctatttacattattaccatgcaactaactattctattttcaccatccacttctcattactcttctccatc |
29068750 |
T |
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