View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11032_low_2 (Length: 362)
Name: NF11032_low_2
Description: NF11032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11032_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 7 - 353
Target Start/End: Complemental strand, 41129609 - 41129264
Alignment:
| Q |
7 |
atgctgatattcttaaatgggcaaacagaaaagtgaatagcattggaagaacgtctcgcattcagagtttcaaggtcttttgnnnnnnntatggtttatt |
106 |
Q |
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| T |
41129609 |
atgctgatattcttaaatgggcaaacagaaaagtgaatagcattggaagaacgtctcgcattcagagtttcaaggt-ttttgaaaaaaatatggtttatt |
41129511 |
T |
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| Q |
107 |
tcccgttaaatgcacgataacagtagactaaaacaatgatttattagttacactattttggatgcaattttgtgcacaggataagagcttgtcaagtgga |
206 |
Q |
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| T |
41129510 |
tcctgttaaatgcacgataacagtagactaaaacaatgatttattagttacactattttggatgcaattttgtgtacaggataagagcttgtcaagtgga |
41129411 |
T |
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| Q |
207 |
ctcttcttcctggagcttctcagtgcagtagagccaagggttgtcaactggaacctagtgacaaagggtcaaagtggtatgattccttgcaaatccaata |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41129410 |
ctcttcttcctggagcttctcagtgcagtagagccaagggttgtcaactggaacctagtgacaaagggtcaaagtggtatgattccttgcaaatccaata |
41129311 |
T |
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| Q |
307 |
gttaccattgagtttggctaatttttagatatatttctttagttcat |
353 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41129310 |
gttaccattgagtttggctaatttttagatatatttctttagttcat |
41129264 |
T |
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