View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11033_high_10 (Length: 410)
Name: NF11033_high_10
Description: NF11033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11033_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 10 - 397
Target Start/End: Complemental strand, 36480003 - 36479616
Alignment:
| Q |
10 |
atgagatgaaactgctatagccattttcacggatttcatctatggcataatcatggattcatgaagtggccagttgtattggtaaggatgttgaatttgg |
109 |
Q |
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| T |
36480003 |
atgacatgaaactgctatagccattttcacggatttcatctatggcataatcatggattcatgaagtggccagttgtattggtaaggatgttgaatttgg |
36479904 |
T |
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| Q |
110 |
attgaactgcatccaacaaccgttgagcttgaaattgaagatttatctctttgaggcaccaatcacatcaaatgtttgtttcattattgattagttacgt |
209 |
Q |
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| T |
36479903 |
attgaactgcatccaacaaccgttgagcttgaaattgaagatttatctctttgaggcaccaatcacatcaaatgtttgtttcattgttgattagttacgt |
36479804 |
T |
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| Q |
210 |
cttctttgcaccaccggacctacacattttgttgtttcatgtattattattgaaccaacggtccacaagcacatattaaaaccaatttgtctatgagttc |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36479803 |
cttctttgcaccaccggacctacacattttgttgtttcatgtattattattgaaccaacggtccacaagcacatattaaaaccaatttgtctatgtgttc |
36479704 |
T |
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| Q |
310 |
gaatagattgatggggaggttaaagaaatattgacaagctccaaaagggcgtcataattaagcaccaaggaaagaaatgaaatgactg |
397 |
Q |
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| T |
36479703 |
gaatagattgatggggaggttaaagaaatattgacaagctccaaaagggcgtcataattaagcaccaaggaaagaaatgaaatgactg |
36479616 |
T |
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