View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11033_high_17 (Length: 351)
Name: NF11033_high_17
Description: NF11033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11033_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 50087305 - 50086973
Alignment:
| Q |
1 |
ttacaaaagaatcttcaattatctactgaacacgtggaagcatcaaggatgacactgcataggtttggtaatacatcttcatcatcactatggtatgaac |
100 |
Q |
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| T |
50087305 |
ttacaaaagaatcttcaattatctactgaacacgtggaagcatcaaggatgacactgcataggtttggtaatacatcttcatcatcactatggtatgaac |
50087206 |
T |
|
| Q |
101 |
ttaactacattgaatcaaaaggtaggatgaagaaaggagacagggtatggcagatagcatttggcagtggatttaaatgcaatagtgctgtttggaaatg |
200 |
Q |
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| T |
50087205 |
ttaactacattgaatcaaaaggtaggatgaagaaaggagacagggtatggcagatagcatttggcagtggatttaaatgcaatagtgctgtttggaaatg |
50087106 |
T |
|
| Q |
201 |
taacagaagcattaagacacctattgatggaccttggacagattgcattgatcgttacccagttcatattcctgaaattgttaaactctagtctactact |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
50087105 |
taacagaagcattaagacacctattgatggaccttggacagattgcattgatcgttacccagttcatattcctgaaattgttaaactctagtc---tact |
50087009 |
T |
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| Q |
301 |
ctattgggagaaaagaaattcattcaaggtggtaaa |
336 |
Q |
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| T |
50087008 |
ctattgggagaaaagaaattcattcaaggtggtaaa |
50086973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 23271566 - 23271277
Alignment:
| Q |
1 |
ttacaaaagaatcttcaattatctactgaacacgtggaagcatcaaggatgacactgcataggtttggtaatacatcttcatcatcactatggtatgaac |
100 |
Q |
| |
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||||| ||||||||||| ||||| ||||||| || || || ||||| ||||| |||||| | || || || |||||||| ||||| ||||||||||| |
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| T |
23271566 |
ttacagaagaatcttcagctatctgctgaacatgttgaggcttcaagaatgacgctgcatcgattcgggaacacatcttcttcatctttatggtatgaat |
23271467 |
T |
|
| Q |
101 |
ttaactacattgaatcaaaaggtaggatgaagaaaggagacagggtatggcagatagcatttggcagtggatttaaatgcaatagtgctgtttggaaatg |
200 |
Q |
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| T |
23271466 |
tgaactatattgaatcaaaaggaaggatgaagagaggtgatagagtatggcaaatagcttttggaagtggatttaaatgcaatagtgctgtgtggaaatg |
23271367 |
T |
|
| Q |
201 |
taacagaagcattaagacacctattgatggaccttggacagattgcattgatcgttacccagttcatattcctgaaattgttaaactcta |
290 |
Q |
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||| ||||||||||| |||||| || ||||||||||| ||||||||||||||| || ||||||||||||||||| |||||||| ||||| |
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| T |
23271366 |
taatagaagcattaaaacacctgttaatggaccttgggaagattgcattgatcgctatccagttcatattcctgagattgttaagctcta |
23271277 |
T |
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