View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11033_high_21 (Length: 330)
Name: NF11033_high_21
Description: NF11033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11033_high_21 |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 322
Target Start/End: Complemental strand, 8288530 - 8288229
Alignment:
| Q |
18 |
ctttctcttctaaattcccattgcaattctttctcttctaaattttcatggtaaaaactctttctgttacaccgtgacaccgtctcgcctcgggagccgt |
117 |
Q |
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| T |
8288530 |
ctttctcttctaaattcccattgcaattctttctcttctaaattttcatggtaaaaactctttctgttacaccgtgaaaccgtctcgtctcgggagccat |
8288431 |
T |
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| Q |
118 |
tgcccacatatagagtcgttgtcaccagctccaaaacttggtgattttgtgaggagaccaagccaaaccaaagtttgtttgacatggattttggtgagtg |
217 |
Q |
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| T |
8288430 |
tgcccgcatctagaattgttgtcaccagctccaaaacttggtgattttgtgaggagaccaagccaaaccaaagtttgtttgacatggattttggtgagtg |
8288331 |
T |
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| Q |
218 |
attgtgtttgttttgaaccaaaagctttgactgtcataataatttgaacatattttgcgagtgtacaattttgaccgtcttttgagctttagactatcct |
317 |
Q |
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| T |
8288330 |
attgtgtttgttttgaaccaaaagctttgactgtca---taatttgaacatattttgcgagtgtataattttgatcgtcttttgagctttagactatctt |
8288234 |
T |
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| Q |
318 |
ttgct |
322 |
Q |
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||||| |
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| T |
8288233 |
ttgct |
8288229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 154 - 233
Target Start/End: Complemental strand, 26585309 - 26585230
Alignment:
| Q |
154 |
cttggtgattttgtgaggagaccaagccaaaccaaagtttgtttgacatggattttggtgagtgattgtgtttgttttga |
233 |
Q |
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| T |
26585309 |
cttggtgattttgtgaggaggccaaaccaaaccaaagtttgtttgacatagattttggtgagtgattgtgtttgttttga |
26585230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 133 - 237
Target Start/End: Complemental strand, 26585684 - 26585582
Alignment:
| Q |
133 |
tcgttgtcaccagctccaaaacttggtgattttgtgaggagaccaagccaaaccaaagtttgtttgacatggattttggtgagtgattgtgtttgttttg |
232 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| || |||||| ||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
26585684 |
tcgttgtcaccaactccaaaacttggtgattttgtgaggagagaaaaccaaacaaaagtttgtttaacatggattttggtgagtga--ctgtttgttttg |
26585587 |
T |
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| Q |
233 |
aacca |
237 |
Q |
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||||| |
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| T |
26585586 |
aacca |
26585582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 26979391 - 26979448
Alignment:
| Q |
180 |
ccaaaccaaagtttgtttgacatggattttggtgagtgattgtgtttgttttgaacca |
237 |
Q |
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| T |
26979391 |
ccaaaccaaagtttgtttgacatggattttggtgaatgagtgtgtttattttgaacca |
26979448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 19828528 - 19828472
Alignment:
| Q |
128 |
tagagtcgttgtcaccagctccaaaacttggtgattttgtgaggagaccaagccaaa |
184 |
Q |
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| T |
19828528 |
tagagtcgttgtcaccagctccaaaacttggtgattttgtgaggagaccaaaccaaa |
19828472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 98
Target Start/End: Complemental strand, 19828587 - 19828532
Alignment:
| Q |
43 |
attctttctcttctaaattttcatggtaaaaactctttctgttacaccgtgacacc |
98 |
Q |
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||||||||||||||||||| |||||| |||||||||||| |||||| |||||||| |
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| T |
19828587 |
attctttctcttctaaattcccatggtgaaaactctttcttttacactgtgacacc |
19828532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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