View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11033_high_24 (Length: 295)

Name: NF11033_high_24
Description: NF11033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11033_high_24
NF11033_high_24
[»] chr4 (49 HSPs)
chr4 (1-284)||(18459463-18459745)
chr4 (1-234)||(8010968-8011214)
chr4 (1-284)||(7452511-7452802)
chr4 (64-260)||(4156879-4157072)
chr4 (64-177)||(9149632-9149745)
chr4 (4-177)||(7044870-7045057)
chr4 (1-284)||(10394602-10394907)
chr4 (1-168)||(5943091-5943259)
chr4 (97-177)||(7825157-7825237)
chr4 (1-168)||(6346787-6346968)
chr4 (112-177)||(7815754-7815819)
chr4 (64-168)||(7045058-7045162)
chr4 (117-177)||(7803203-7803263)
chr4 (64-179)||(55476080-55476195)
chr4 (187-256)||(6347015-6347084)
chr4 (1-141)||(10143043-10143197)
chr4 (86-177)||(8743708-8743801)
chr4 (85-173)||(18403639-18403728)
chr4 (92-177)||(22060666-22060753)
chr4 (1-61)||(37240476-37240536)
chr4 (87-143)||(5846050-5846106)
chr4 (64-148)||(9911320-9911403)
chr4 (64-143)||(8409723-8409801)
chr4 (1-63)||(55476223-55476285)
chr4 (64-137)||(24719722-24719795)
chr4 (64-148)||(5375801-5375885)
chr4 (64-139)||(5884202-5884277)
chr4 (1-67)||(5361797-5361863)
chr4 (87-148)||(13023707-13023768)
chr4 (3-67)||(9149556-9149620)
chr4 (64-148)||(17466216-17466299)
chr4 (132-176)||(46664264-46664308)
chr4 (1-60)||(9770350-9770409)
chr4 (64-177)||(20812634-20812750)
chr4 (102-148)||(5361909-5361955)
chr4 (5-67)||(24719806-24719868)
chr4 (64-141)||(36120968-36121043)
chr4 (3-56)||(4157269-4157322)
chr4 (3-56)||(4157556-4157609)
chr4 (1-66)||(9911243-9911308)
chr4 (1-66)||(23064793-23064858)
chr4 (187-256)||(24719626-24719695)
chr4 (1-60)||(5375903-5375962)
chr4 (85-128)||(8020731-8020774)
chr4 (3-53)||(8889462-8889512)
chr4 (1-66)||(17466311-17466376)
chr4 (1-66)||(36121055-36121120)
chr4 (4-40)||(7045202-7045238)
chr4 (64-148)||(9770249-9770332)
[»] chr7 (52 HSPs)
chr7 (1-256)||(21157525-21157783)
chr7 (1-256)||(26565380-26565648)
chr7 (6-247)||(30294291-30294538)
chr7 (85-177)||(17809057-17809149)
chr7 (86-177)||(1981266-1981358)
chr7 (64-176)||(25842653-25842765)
chr7 (64-176)||(23618351-23618463)
chr7 (1-66)||(39182388-39182453)
chr7 (64-148)||(5058666-5058749)
chr7 (1-67)||(8329876-8329942)
chr7 (1-148)||(44944677-44944837)
chr7 (64-141)||(20570794-20570870)
chr7 (1-68)||(8346363-8346430)
chr7 (3-66)||(14055489-14055552)
chr7 (3-66)||(14365517-14365580)
chr7 (1-67)||(1977780-1977845)
chr7 (1-68)||(4247586-4247653)
chr7 (4-67)||(8329814-8329877)
chr7 (4-67)||(21846282-21846345)
chr7 (64-176)||(8254028-8254143)
chr7 (85-177)||(8629670-8629761)
chr7 (1-67)||(22687099-22687165)
chr7 (1-66)||(5715517-5715582)
chr7 (64-148)||(4247493-4247576)
chr7 (64-148)||(17811484-17811568)
chr7 (143-260)||(24915791-24915908)
chr7 (1-60)||(4574968-4575027)
chr7 (105-148)||(5715426-5715469)
chr7 (1-56)||(17741886-17741941)
chr7 (1-60)||(17811586-17811645)
chr7 (97-148)||(24725418-24725469)
chr7 (1-67)||(8343634-8343700)
chr7 (4-66)||(20570720-20570782)
chr7 (4-66)||(24725307-24725369)
chr7 (1-66)||(7730191-7730256)
chr7 (103-148)||(14055388-14055433)
chr7 (103-148)||(14365416-14365461)
chr7 (1-66)||(24989606-24989670)
chr7 (95-148)||(24990010-24990063)
chr7 (66-122)||(4574879-4574935)
chr7 (11-67)||(8346308-8346364)
chr7 (1-60)||(8304324-8304383)
chr7 (85-143)||(7307140-7307197)
chr7 (104-177)||(8304178-8304252)
chr7 (212-258)||(23618594-23618640)
chr7 (190-256)||(25842884-25842950)
chr7 (102-148)||(26281256-26281302)
chr7 (106-148)||(27221555-27221597)
chr7 (1-31)||(27221681-27221711)
chr7 (17-66)||(27509260-27509309)
chr7 (1-61)||(5058766-5058825)
chr7 (5-57)||(23618265-23618317)
[»] chr2 (47 HSPs)
chr2 (1-234)||(25538977-25539224)
chr2 (64-233)||(19491983-19492153)
chr2 (64-177)||(27406898-27407011)
chr2 (4-177)||(16766894-16767079)
chr2 (64-229)||(5395431-5395596)
chr2 (64-177)||(41002119-41002232)
chr2 (64-256)||(31023332-31023522)
chr2 (64-177)||(974431-974545)
chr2 (64-160)||(34841705-34841801)
chr2 (64-177)||(21869243-21869357)
chr2 (62-255)||(15627771-15627966)
chr2 (1-177)||(19245690-19245886)
chr2 (4-177)||(8428332-8428516)
chr2 (64-176)||(34577986-34578096)
chr2 (64-176)||(20034144-20034255)
chr2 (91-175)||(26251621-26251708)
chr2 (212-284)||(5395613-5395685)
chr2 (64-174)||(7301884-7301994)
chr2 (1-66)||(19262148-19262213)
chr2 (138-255)||(13502947-13503063)
chr2 (85-168)||(27524038-27524122)
chr2 (64-141)||(35565866-35565939)
chr2 (1-60)||(974576-974635)
chr2 (68-172)||(24473931-24474037)
chr2 (4-66)||(1405015-1405077)
chr2 (1-66)||(20063955-20064020)
chr2 (64-148)||(31237885-31237969)
chr2 (64-120)||(13502582-13502638)
chr2 (1-57)||(27523928-27523984)
chr2 (92-148)||(31578141-31578197)
chr2 (64-148)||(15588763-15588842)
chr2 (212-259)||(34577808-34577855)
chr2 (1-67)||(13502505-13502571)
chr2 (1-67)||(29661100-29661166)
chr2 (3-68)||(35565788-35565856)
chr2 (209-258)||(19257490-19257539)
chr2 (107-177)||(27749713-27749785)
chr2 (1-58)||(36430088-36430145)
chr2 (1-57)||(7302023-7302079)
chr2 (1-57)||(20034054-20034110)
chr2 (4-75)||(21869156-21869227)
chr2 (1-68)||(27407021-27407088)
chr2 (1-60)||(31237808-31237867)
chr2 (85-284)||(8428234-8428421)
chr2 (87-129)||(19519529-19519571)
chr2 (4-66)||(30433047-30433109)
chr2 (64-148)||(36429985-36430068)
[»] chr5 (40 HSPs)
chr5 (1-177)||(24648124-24648306)
chr5 (3-247)||(43005693-43005953)
chr5 (5-161)||(26021444-26021612)
chr5 (87-177)||(19377706-19377798)
chr5 (64-177)||(41427512-41427626)
chr5 (85-175)||(30804032-30804122)
chr5 (64-177)||(15446304-15446419)
chr5 (64-148)||(18843852-18843935)
chr5 (97-177)||(22984755-22984837)
chr5 (130-177)||(13349509-13349556)
chr5 (98-177)||(30799499-30799578)
chr5 (64-122)||(9996892-9996950)
chr5 (85-177)||(187814-187907)
chr5 (64-148)||(19579079-19579163)
chr5 (187-245)||(26021395-26021453)
chr5 (4-66)||(43235100-43235162)
chr5 (6-66)||(38158101-38158161)
chr5 (4-60)||(41688501-41688557)
chr5 (1-60)||(41427657-41427716)
chr5 (1-66)||(21058988-21059054)
chr5 (11-73)||(22984643-22984705)
chr5 (190-259)||(4289918-4289987)
chr5 (64-133)||(15052013-15052081)
chr5 (1-66)||(19042260-19042325)
chr5 (103-148)||(19979736-19979781)
chr5 (1-66)||(27340019-27340084)
chr5 (1-53)||(15051929-15051981)
chr5 (4-60)||(19579181-19579237)
chr5 (64-148)||(20321079-20321163)
chr5 (64-148)||(23172337-23172420)
chr5 (213-260)||(15445860-15445907)
chr5 (4-75)||(15446435-15446506)
chr5 (12-63)||(19377838-19377889)
chr5 (110-177)||(29270237-29270303)
chr5 (4-66)||(20321175-20321237)
chr5 (64-141)||(21059066-21059141)
chr5 (209-259)||(29269774-29269824)
chr5 (64-148)||(41688575-41688657)
chr5 (1-73)||(13341530-13341601)
chr5 (6-66)||(23172265-23172325)
[»] chr3 (49 HSPs)
chr3 (4-256)||(27676465-27676730)
chr3 (1-247)||(17796605-17796862)
chr3 (1-247)||(19105045-19105302)
chr3 (107-256)||(10872816-10872966)
chr3 (64-177)||(6861048-6861163)
chr3 (1-66)||(17064539-17064604)
chr3 (64-176)||(19348648-19348760)
chr3 (86-175)||(18014089-18014177)
chr3 (1-67)||(13286175-13286241)
chr3 (64-176)||(22970903-22971016)
chr3 (1-66)||(25870154-25870219)
chr3 (64-148)||(39428039-39428123)
chr3 (3-148)||(42696984-42697143)
chr3 (64-163)||(9169782-9169880)
chr3 (4-67)||(10872550-10872613)
chr3 (1-67)||(6136401-6136467)
chr3 (1-148)||(28745913-28746073)
chr3 (1-74)||(8592231-8592304)
chr3 (85-163)||(8592341-8592421)
chr3 (130-256)||(15806409-15806526)
chr3 (1-66)||(28135994-28136059)
chr3 (1-65)||(3449142-3449206)
chr3 (88-139)||(27055255-27055306)
chr3 (3-60)||(24620031-24620088)
chr3 (110-177)||(8566180-8566248)
chr3 (1-57)||(9152817-9152873)
chr3 (85-129)||(10591788-10591832)
chr3 (92-148)||(15515192-15515248)
chr3 (64-124)||(15806292-15806352)
chr3 (3-67)||(22137508-22137572)
chr3 (145-234)||(24649597-24649686)
chr3 (212-259)||(3041197-3041244)
chr3 (64-143)||(23649368-23649447)
chr3 (102-148)||(24620146-24620192)
chr3 (64-128)||(6136478-6136540)
chr3 (1-66)||(20756254-20756319)
chr3 (64-129)||(25870231-25870295)
chr3 (1-74)||(27090666-27090739)
chr3 (1-57)||(3041464-3041520)
chr3 (1-53)||(22971054-22971106)
chr3 (3-51)||(41671426-41671474)
chr3 (212-259)||(20767443-20767490)
chr3 (212-259)||(22970725-22970772)
chr3 (212-259)||(26234936-26234983)
chr3 (1-31)||(18014258-18014288)
chr3 (64-135)||(21553814-21553888)
chr3 (102-148)||(22494734-22494780)
chr3 (4-65)||(8155964-8156025)
chr3 (212-256)||(24263376-24263421)
[»] chr1 (39 HSPs)
chr1 (1-234)||(17055751-17055997)
chr1 (64-256)||(18891503-18891697)
chr1 (64-247)||(27917281-27917462)
chr1 (85-172)||(12002801-12002890)
chr1 (1-148)||(47785996-47786155)
chr1 (1-148)||(16125287-16125447)
chr1 (64-176)||(17197450-17197562)
chr1 (84-177)||(24117602-24117695)
chr1 (64-148)||(42179973-42180057)
chr1 (97-159)||(16446700-16446762)
chr1 (4-66)||(21846109-21846171)
chr1 (110-170)||(18337239-18337300)
chr1 (1-66)||(23528888-23528953)
chr1 (1-66)||(41032605-41032670)
chr1 (1-67)||(13100421-13100487)
chr1 (64-141)||(13276175-13276251)
chr1 (1-74)||(16434733-16434806)
chr1 (1-66)||(18304643-18304708)
chr1 (1-66)||(32881552-32881617)
chr1 (64-148)||(9351972-9352055)
chr1 (64-148)||(25146678-25146761)
chr1 (13-66)||(13276112-13276163)
chr1 (4-66)||(14074318-14074380)
chr1 (1-63)||(21242859-21242921)
chr1 (64-141)||(18304720-18304796)
chr1 (1-66)||(19009780-19009845)
chr1 (6-59)||(30619181-30619234)
chr1 (1-60)||(8773506-8773565)
chr1 (1-60)||(25146600-25146659)
chr1 (1-31)||(9321567-9321597)
chr1 (1-31)||(9954865-9954895)
chr1 (187-256)||(18337472-18337542)
chr1 (143-177)||(39845218-39845252)
chr1 (1-31)||(42179903-42179933)
chr1 (107-177)||(8773066-8773138)
chr1 (64-140)||(9954942-9955019)
chr1 (64-120)||(16434674-16434731)
chr1 (1-37)||(17055999-17056035)
chr1 (92-140)||(21846210-21846258)
[»] scaffold0603 (1 HSPs)
scaffold0603 (4-177)||(8794-8981)
[»] chr6 (44 HSPs)
chr6 (64-284)||(4841738-4841956)
chr6 (85-177)||(31407401-31407495)
chr6 (64-177)||(18490548-18490661)
chr6 (64-166)||(20399995-20400099)
chr6 (85-162)||(5422589-5422665)
chr6 (64-177)||(33593072-33593187)
chr6 (85-176)||(27890480-27890573)
chr6 (64-177)||(20432515-20432629)
chr6 (1-148)||(23897948-23898107)
chr6 (142-279)||(18490780-18490917)
chr6 (1-60)||(20432425-20432484)
chr6 (131-234)||(3573866-3573969)
chr6 (85-177)||(7621909-7622004)
chr6 (1-66)||(19748565-19748630)
chr6 (88-143)||(645415-645470)
chr6 (1-66)||(3573732-3573797)
chr6 (1-66)||(7223747-7223812)
chr6 (1-66)||(11327394-11327459)
chr6 (5-66)||(15527946-15528007)
chr6 (86-175)||(31108252-31108341)
chr6 (64-148)||(26053205-26053288)
chr6 (64-148)||(26073258-26073341)
chr6 (1-68)||(30912238-30912305)
chr6 (1-66)||(17103427-17103492)
chr6 (1-66)||(22498272-22498337)
chr6 (1-73)||(27890611-27890683)
chr6 (92-148)||(30912348-30912404)
chr6 (105-148)||(7223649-7223692)
chr6 (64-141)||(7918259-7918333)
chr6 (97-148)||(15528051-15528102)
chr6 (4-59)||(17543565-17543620)
chr6 (97-148)||(17543681-17543732)
chr6 (97-148)||(21354877-21354928)
chr6 (5-55)||(4841665-4841715)
chr6 (130-177)||(7857099-7857148)
chr6 (1-59)||(26053128-26053186)
chr6 (1-59)||(26073181-26073239)
chr6 (7-57)||(28669544-28669594)
chr6 (1-66)||(2912093-2912158)
chr6 (1-66)||(7918182-7918247)
chr6 (144-177)||(28669422-28669455)
chr6 (1-62)||(33583499-33583559)
chr6 (224-260)||(5422725-5422761)
chr6 (1-73)||(33592983-33593054)
[»] chr8 (35 HSPs)
chr8 (64-177)||(26575032-26575147)
chr8 (1-170)||(15761190-15761375)
chr8 (64-173)||(1018090-1018199)
chr8 (4-66)||(17647229-17647291)
chr8 (1-141)||(45403173-45403326)
chr8 (64-175)||(8582153-8582263)
chr8 (64-141)||(23142319-23142394)
chr8 (1-67)||(29384144-29384210)
chr8 (92-177)||(40541770-40541856)
chr8 (1-148)||(6810958-6811116)
chr8 (87-175)||(16752119-16752208)
chr8 (1-177)||(17566217-17566395)
chr8 (1-66)||(24414119-24414184)
chr8 (4-67)||(15294900-15294963)
chr8 (4-67)||(15475269-15475332)
chr8 (192-247)||(24056523-24056578)
chr8 (1-148)||(11879737-11879897)
chr8 (1-148)||(11897153-11897313)
chr8 (1-67)||(22910035-22910101)
chr8 (64-148)||(3094151-3094235)
chr8 (7-66)||(5922280-5922339)
chr8 (1-60)||(7489115-7489174)
chr8 (4-66)||(24056405-24056467)
chr8 (64-139)||(29384221-29384300)
chr8 (1-66)||(15231853-15231918)
chr8 (1-70)||(16752251-16752320)
chr8 (1-66)||(32424566-32424631)
chr8 (1-57)||(2040360-2040416)
chr8 (1-53)||(26574949-26575001)
chr8 (64-148)||(27836373-27836456)
chr8 (1-31)||(27836131-27836161)
chr8 (190-259)||(16751932-16752000)
chr8 (1-66)||(23142406-23142471)
chr8 (97-141)||(7489224-7489268)
chr8 (187-247)||(15761391-15761451)
[»] scaffold0115 (2 HSPs)
scaffold0115 (69-177)||(34903-35011)
scaffold0115 (209-243)||(35039-35073)
[»] scaffold0048 (7 HSPs)
scaffold0048 (138-260)||(48680-48802)
scaffold0048 (187-269)||(61323-61405)
scaffold0048 (1-67)||(61146-61212)
scaffold0048 (4-64)||(48497-48557)
scaffold0048 (111-172)||(48616-48679)
scaffold0048 (141-172)||(61268-61299)
scaffold0048 (65-113)||(48572-48620)
[»] scaffold1178 (1 HSPs)
scaffold1178 (64-177)||(428-542)
[»] scaffold0017 (1 HSPs)
scaffold0017 (87-175)||(38475-38565)
[»] scaffold0027 (2 HSPs)
scaffold0027 (87-176)||(133059-133149)
scaffold0027 (1-57)||(132947-133003)
[»] scaffold0001 (1 HSPs)
scaffold0001 (88-177)||(142724-142814)
[»] scaffold0684 (2 HSPs)
scaffold0684 (92-177)||(5161-5247)
scaffold0684 (190-259)||(5554-5623)
[»] scaffold0534 (1 HSPs)
scaffold0534 (1-177)||(789-967)
[»] scaffold0186 (1 HSPs)
scaffold0186 (1-148)||(8580-8738)
[»] scaffold0042 (1 HSPs)
scaffold0042 (3-67)||(93539-93603)
[»] scaffold0028 (1 HSPs)
scaffold0028 (1-73)||(145813-145885)
[»] scaffold0061 (1 HSPs)
scaffold0061 (87-138)||(76257-76308)
[»] scaffold0016 (1 HSPs)
scaffold0016 (4-66)||(56260-56322)
[»] scaffold0510 (1 HSPs)
scaffold0510 (1-66)||(36-100)
[»] scaffold0150 (1 HSPs)
scaffold0150 (3-63)||(33173-33233)
[»] scaffold0259 (1 HSPs)
scaffold0259 (64-131)||(18537-18604)
[»] scaffold0163 (2 HSPs)
scaffold0163 (92-177)||(2871-2957)
scaffold0163 (190-259)||(2495-2564)
[»] scaffold0036 (2 HSPs)
scaffold0036 (123-169)||(37057-37103)
scaffold0036 (190-284)||(37110-37203)
[»] scaffold0182 (1 HSPs)
scaffold0182 (210-259)||(24299-24348)
[»] scaffold0079 (2 HSPs)
scaffold0079 (1-57)||(14758-14814)
scaffold0079 (212-259)||(15021-15068)
[»] scaffold0417 (1 HSPs)
scaffold0417 (3-66)||(7289-7352)
[»] scaffold0526 (1 HSPs)
scaffold0526 (64-141)||(8288-8363)


Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 49)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 18459463 - 18459745
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatcaaaatcgatggactttgccaaaacaaaagtaat 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||     
T  18459463 tcgtaaaatcgcaattaaaatcgaaggatttgacttaactaattttgtagaattgatataagaaatcaaaatcgatgg-ctttgccaaaacaaaagtaac 18459561  T
Q  101 gctaaatatatgttataaattgtatataatcataaatgactcagtttaaagtccacaaaatacttatacataaatgattnnnnnnntggacaaaatcctt 200  Q
    |||||||||||||||| || |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||       ||||||||||||||    
T  18459562 gctaaatatatgttatgaactgtatatagtcataaatgactcggtttaaagtccacaaaatacttatacataaatgattacaaaaatggacaaaatcctt 18459661  T
Q  201 aaaaaccgtttaaaatcctgcaattttgtatgaatttcacgattttgtgcgattttgatggacttttacaaggattttgcctat 284  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  18459662 caaaaccgtttaaaatcctgcaattttgtatgaatttcacgattttgtgcgattttgatggacttttactaggattttgcctat 18459745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 8010968 - 8011214
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat--------------caaaatcgatggactttgcc 86  Q
    ||||||||||||||||||||||||||||||| ||| ||||| |||| |||||||||||||||||||              ||||||||||| | ||| ||    
T  8010968 tcgtaaaatcgcaatcaaaatcgaaggattttactcaactatttttatagaatcgatataagaaattgtaaaatcgcaatcaaaatcgatgtattttacc 8011067  T
Q  87 aaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagtttaaagtccacaaaatacttatacataaatgattnnnnnnn 186  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||| |           
T  8011068 aaaacaaaaataatgctaaatatatgttataaattgtatataattataaatgaattagtttaaagtccacaaaatacttatacataaatgaataaagaaa 8011167  T
Q  187 tggacaaaatccttaaaaaccgtttaaaatcctgcaattttgtatgaa 234  Q
    | |||||||| ||| |||||| ||||||||||||| ||||||| ||||    
T  8011168 t-gacaaaattcttcaaaaccctttaaaatcctgcgattttgtttgaa 8011214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 7452802 - 7452511
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatc--------------aaaatcgatggactttgcc 86  Q
    ||||||||||||||||||||||||||||||| ||| ||||| |||||||||||| ||||| ||||||              |||||||||||| |||| |    
T  7452802 tcgtaaaatcgcaatcaaaatcgaaggattt-actcaactacttttgtagaatcaatatacgaaatcgtaaaagcacaactaaaatcgatggattttgtc 7452704  T
Q  87 aaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagtttaaagtccacaaaatacttatacataaatga-ttnnnnnn 185  Q
    ||||||||| ||||||| ||||||||||||||||| ||||||     ||||||||||||||||| ||||||||| ||||||||| ||||||             
T  7452703 aaaacaaaaataatgcttaatatatgttataaattctatatag----aaatgactcagtttaaattccacaaaacacttatacaaaaatgaccaaaaaaa 7452608  T
Q  186 ntggacaaaatccttaaaaaccgtttaaaatcctgcaattttgtatgaatttcacgattttgtgcgattttgatggacttttacaaggattttgcctat 284  Q
     |||||  ||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||| || |   |||||  ||||||||||||||    
T  7452607 ttggac--aatccttcaaaaccctttaaaatcctgcaattttgtatgtatttcacgattttgtgcgatttagaagcgattttattaggattttgcctat 7452511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 64 - 260
Target Start/End: Complemental strand, 4157072 - 4156879
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagtttaaagtccacaaaatac 163  Q
    |||||||||||||||| ||| | ||||||||| ||||| | |||||||||||||| ||||||||| | |||||||| || ||||||||| ||||||||||    
T  4157072 aatcaaaatcgatggattttactaaaacaaaaataatgttgaatatatgttataa-ttgtatatagtgataaatgattcggtttaaagttcacaaaatac 4156974  T
Q  164 ttatacataaatgattnnnnnnntggacaaaatccttaaaaaccgtttaaaatcctgcaattttgtatgaatttcacgattttgtgcgattttgatg 260  Q
    |||||||||||||| |       |||||||||||||| |||| | ||||||||| ||| |||||||||| ||||||| | |||||| ||||||||||    
T  4156973 ttatacataaatgaat-aaaaaatggacaaaatccttcaaaatcctttaaaatcttgcgattttgtatgtatttcac-aatttgtgtgattttgatg 4156879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 64 - 177
Target Start/End: Original strand, 9149632 - 9149745
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagtttaaagtccacaaaatac 163  Q
    ||||||||| ||| || ||| |||||| |||| |||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||| |||||||    
T  9149632 aatcaaaattgatagattttaccaaaagaaaaataatgctaaatatatgttataaattgtatatagttataaatgactcagcttaaagtccaaaaaatac 9149731  T
Q  164 ttatacataaatga 177  Q
    ||||||||||||||    
T  9149732 ttatacataaatga 9149745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 177
Target Start/End: Complemental strand, 7045057 - 7044870
Alignment:
Q  4 taaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatc--------------aaaatcgatggactttgccaaa 89  Q
    |||||||||||||||||||||| ||||| ||| ||||| ||||| | |||||||||||||||||              |||||||||||| ||| |||||    
T  7045057 taaaatcgcaatcaaaatcgaatgattttactcaactacttttgaataatcgatataagaaatcgtaaaatatcaatcaaaatcgatggattttaccaaa 7044958  T
Q  90 acaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagtttaaagtccacaaaatacttatacataaatga 177  Q
    |||||| ||||| |||| || |||||||| ||||||||| | |||||||||||||||||||||| |||| ||||||||||||||||||    
T  7044957 acaaaaataatgttaaacatgtgttataatttgtatatagtgataaatgactcagtttaaagtcgacaagatacttatacataaatga 7044870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 10394907 - 10394602
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatca-------------aaatcgatggactttgcca 87  Q
    |||||||||||||||||||||||||||| || ||| ||||| ||||||||||||| |||| ||||||              |||||||||||  || |||    
T  10394907 tcgtaaaatcgcaatcaaaatcgaaggactttactcaactacttttgtagaatcggtataggaaatcgtaaaattacaatcaaatcgatggatattacca 10394808  T
Q  88 aaacaaaagtaatgctaaatatatgttataaattgtatataatc--------ataaatgactcagtttaaagtccacaaaatacttatacataaatgatt 179  Q
    |||||||| ||||| ||||||||||||||||||||||||| | |        ||||||||||| ||||||| | |||||||| |||||||||||||||||    
T  10394807 aaacaaaaataatggtaaatatatgttataaattgtatattacctcccaaaaataaatgactccgtttaaaattcacaaaattcttatacataaatgatt 10394708  T
Q  180 nnnnnnnt-ggacaaaatccttaaaaaccgtttaaaatcctgcaattttgtatgaatttcacgattttgtgcgattttgatggacttttacaaggatttt 278  Q
             |||  |||||||| |||||  ||||||||||||| |||||| ||| |||| | |||||||||||||||| ||| | |||||||||||| ||    
T  10394707 aataaaagaggaagaaatccttcaaaactctttaaaatcctgcgattttgaatggatttaatgattttgtgcgattttaatgcaattttacaaggatctt 10394608  T
Q  279 gcctat 284  Q
    ||||||    
T  10394607 gcctat 10394602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 5943091 - 5943259
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatc--aaaatcgatggactttgccaaaacaaaagta 98  Q
    ||||||||||||||  ||||| ||||||||| ||| ||||| ||||||||||||| | |||||||||  |||||||||||| ||| |||||| |||| ||    
T  5943091 tcgtaaaatcgcaagtaaaattgaaggattttactcaactacttttgtagaatcggtttaagaaatcgtaaaatcgatggattttaccaaaataaaaata 5943190  T
Q  99 atgctaaatat-atgttataaattgtatataatcataaatgactcagtttaaagtccacaaaatacttata 168  Q
    ||| ||||||| |||||||||||  | |||| |||||||||||  |||||||||| |||||||||||||||    
T  5943191 atgttaaatataatgttataaat--tttatagtcataaatgacaaagtttaaagtgcacaaaatacttata 5943259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 97 - 177
Target Start/End: Complemental strand, 7825237 - 7825157
Alignment:
Q  97 taatgctaaatatatgttataaattgtatataatcataaatgactcagtttaaagtccacaaaatacttatacataaatga 177  Q
    |||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7825237 taatgctaaatacaagttataaattgtatatagtcataaatgactcagtttaaagtccacaaaatacttatacataaatga 7825157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 6346787 - 6346968
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat--------------caaaatcgatggactttgcc 86  Q
    |||||||||| |||||||||||||||||||| ||| ||||| |||||||||||  |||||||||||              ||||||||||||| ||  ||    
T  6346787 tcgtaaaatcacaatcaaaatcgaaggattttactcaactacttttgtagaatgaatataagaaattgtaaaatcgcaatcaaaatcgatggatttcacc 6346886  T
Q  87 aaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagtttaaagtccacaaaatacttata 168  Q
    ||||||||| ||||| ||||||||||||||||||||||||||  |||||||||||||| |||||||| | |||||| |||||    
T  6346887 aaaacaaaaataatgataaatatatgttataaattgtatatatgcataaatgactcaggttaaagtctagaaaatagttata 6346968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 112 - 177
Target Start/End: Complemental strand, 7815819 - 7815754
Alignment:
Q  112 gttataaattgtatataatcataaatgactcagtttaaagtccacaaaatacttatacataaatga 177  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  7815819 gttataaattgtatatagtcataaatgactcagtttaaagtccacataatacttatacataaatga 7815754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 64 - 168
Target Start/End: Complemental strand, 7045162 - 7045058
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagtttaaagtccacaaaatac 163  Q
    |||||||||| |||||  || ||||||||||| ||||| |||||||||||||||| ||||||||| | |||||||||||||||||||||| | || ||||    
T  7045162 aatcaaaatctatggatcttaccaaaacaaaaataatgttaaatatatgttataatttgtatatagtgataaatgactcagtttaaagtcgataagatac 7045063  T
Q  164 ttata 168  Q
    |||||    
T  7045062 ttata 7045058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 7803263 - 7803203
Alignment:
Q  117 aaattgtatataatcataaatgactcagtttaaagtccacaaaatacttatacataaatga 177  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7803263 aaattgtatatagtcataaatgactcagtttaaagtccacaaaatacttatacataaatga 7803203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 64 - 179
Target Start/End: Complemental strand, 55476195 - 55476080
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgact-cagtttaaagtccacaaaata 162  Q
    |||||||||||| ||| | | ||||||||||| |||||| ||||||||||||||||||| ||||| ||||||||||||  |||| ||||| |||||||||    
T  55476195 aatcaaaatcga-ggattctaccaaaacaaaaataatgcaaaatatatgttataaattgcatatagtcataaatgactaaagttcaaagtacacaaaata 55476097  T
Q  163 cttatacataaatgatt 179  Q
    | |||||||||||||||    
T  55476096 catatacataaatgatt 55476080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 6347015 - 6347084
Alignment:
Q  187 tggacaaaatccttaaaaaccgtttaaaatcctgcaattttgtatgaatttcacgattttgtgcgatttt 256  Q
    |||||||||||||| |||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  6347015 tggacaaaatccttcaaaaccctttaaaatcctgcgattttgtgtgaatttcacgattttgtgcgatttt 6347084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 10143197 - 10143043
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataaga--------------aatcaaaatcgatggactttgcc 86  Q
    ||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||              ||||||||| |||||| |||  |    
T  10143197 tcgtaaaatcgcaatcaaaatcgaaggattttattcaactaattttgtagaatcgatataagagattgtaaaatcgcaatcaaaattgatggattttatc 10143098  T
Q  87 aaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgact 141  Q
    |||| |||| |||| |||||||||| |||||| | ||||||| ||||||||||||    
T  10143097 aaaaaaaaaataatactaaatatatattataattggtatatagtcataaatgact 10143043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 86 - 177
Target Start/End: Original strand, 8743708 - 8743801
Alignment:
Q  86 caaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactc--agtttaaagtccacaaaatacttatacataaatga 177  Q
    |||||||||| ||||| |||||||||||| ||||||||  ||| |||||||||||||  ||||||||||| ||||||||||| |||||||||||    
T  8743708 caaaacaaaaataatgttaaatatatgttttaaattgttcatagtcataaatgactcaaagtttaaagtctacaaaatacttgtacataaatga 8743801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 173
Target Start/End: Complemental strand, 18403728 - 18403639
Alignment:
Q  85 ccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactc-agtttaaagtccacaaaatacttatacataa 173  Q
    ||||||||||| ||||| |||||||||||||||||||||||||| |||| |||||||| | || |||||||||||||||  |||||||||    
T  18403728 ccaaaacaaaaataatgttaaatatatgttataaattgtatatagtcatgaatgactcaaattcaaagtccacaaaataaatatacataa 18403639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 92 - 177
Target Start/End: Original strand, 22060666 - 22060753
Alignment:
Q  92 aaaagtaatgctaaatatatgttataaattgtatataatcataaatgactc--agtttaaagtccacaaaatacttatacataaatga 177  Q
    |||| ||||||||||||||||| ||||||||||| || |||||||||  ||  ||||| |||||||||||||||||||||||||||||    
T  22060666 aaaaataatgctaaatatatgtaataaattgtatgtagtcataaatgtatcaaagtttcaagtccacaaaatacttatacataaatga 22060753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 37240536 - 37240476
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataa 61  Q
    ||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||    
T  37240536 tcgtaaaatcgcaatcaaaatcgaaggattttactcaactacttttgtagaatcgatataa 37240476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 5846050 - 5846106
Alignment:
Q  87 aaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactca 143  Q
    ||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||    
T  5846050 aaaacaaaaataatgctaaatatatgttataaattgtatattgtcataaatgactca 5846106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 64 - 148
Target Start/End: Original strand, 9911320 - 9911403
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagttta 148  Q
    |||||||||||||||||||| |||||| | || |||| || |||||||||||||||| ||||||| |||||||||||| ||||||    
T  9911320 aatcaaaatcgatggactttaccaaaaaataa-taatacttaatatatgttataaatggtatatagtcataaatgacttagttta 9911403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 143
Target Start/End: Complemental strand, 8409801 - 8409723
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactca 143  Q
    |||||||||||| ||| | | ||||||||||| |||||||||||||||||||||||||  ||||| ||||||||||||||    
T  8409801 aatcaaaatcga-ggattctaccaaaacaaaaataatgctaaatatatgttataaattacatatagtcataaatgactca 8409723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 55476285 - 55476223
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataaga 63  Q
    ||||||||||||||||||||||||||||||| ||| ||  | |||||||||||||||||||||    
T  55476285 tcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatataaga 55476223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 24719795 - 24719722
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaat 137  Q
    ||||||||||||||   ||| ||||| ||||| ||||| |||||||||||||||||||||||||| ||||||||    
T  24719795 aatcaaaatcgatgagttttaccaaagcaaaaataatgttaaatatatgttataaattgtatatagtcataaat 24719722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 148
Target Start/End: Complemental strand, 5375885 - 5375801
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagttta 148  Q
    |||||||||||||||| ||| || ||| |||| |||| |||||||||||||||||||  |||||  |||||||||||| ||||||    
T  5375885 aatcaaaatcgatggattttacccaaaaaaaattaatactaaatatatgttataaatgatatatggtcataaatgacttagttta 5375801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 139
Target Start/End: Original strand, 5884202 - 5884277
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatga 139  Q
    ||||||||| |||||| ||| | ||||||||||||||||||||  |||||||||||||| ||||  ||||||||||    
T  5884202 aatcaaaatagatggattttacaaaaacaaaagtaatgctaaaagtatgttataaattgcatattgtcataaatga 5884277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 5361797 - 5361863
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatc 67  Q
    ||||||||| |||| |||||||||||| ||| ||| ||||| |||||||||||||||||| ||||||    
T  5361797 tcgtaaaattgcaaacaaaatcgaagggttttactcaactacttttgtagaatcgatatatgaaatc 5361863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 148
Target Start/End: Complemental strand, 13023768 - 13023707
Alignment:
Q  87 aaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagttta 148  Q
    |||| |||| |||| ||||||||||||||||||| ||||||| |||||||||||| ||||||    
T  13023768 aaaaaaaaattaatactaaatatatgttataaatggtatatagtcataaatgacttagttta 13023707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 9149556 - 9149620
Alignment:
Q  3 gtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatc 67  Q
    |||||||  |||||||||| ||||||||| ||| ||||| ||| |||||||||||||||||||||    
T  9149556 gtaaaattccaatcaaaattgaaggattttactcaactactttcgtagaatcgatataagaaatc 9149620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 64 - 148
Target Start/End: Complemental strand, 17466299 - 17466216
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagttta 148  Q
    |||||||||||||||| ||| | | || |||| ||||  |||||||||||||||||| ||||||| |||||||||||| ||||||    
T  17466299 aatcaaaatcgatggattttacaacaaaaaaa-taatattaaatatatgttataaatggtatatagtcataaatgacttagttta 17466216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 132 - 176
Target Start/End: Original strand, 46664264 - 46664308
Alignment:
Q  132 ataaatgactcagtttaaagtccacaaaatacttatacataaatg 176  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||    
T  46664264 ataaatgactcagtttaaagtccgcaacatacttatacataaatg 46664308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 9770409 - 9770350
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatata 60  Q
    ||||||||||||||||||||||||||||||| ||| ||    ||||||||||||||||||    
T  9770409 tcgtaaaatcgcaatcaaaatcgaaggattttactcaaggtcttttgtagaatcgatata 9770350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 177
Target Start/End: Complemental strand, 20812750 - 20812634
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatata--tgttataaattgtatataatcataaatgactca--gtttaaagtccacaaa 159  Q
    |||||| ||||| ||| | | |||||| |||| ||||||||||||||  | ||||||| || ||||| ||||||||||||||  |||| ||||| |||||    
T  20812750 aatcaagatcgaaggattctaccaaaagaaaa-taatgctaaatataaatattataaagtgcatatagtcataaatgactcaaagtttcaagtctacaaa 20812652  T
Q  160 atacttatacataaatga 177  Q
    ||||||||| ||||||||    
T  20812651 atacttataaataaatga 20812634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 148
Target Start/End: Original strand, 5361909 - 5361955
Alignment:
Q  102 ctaaatatatgttataaattgtatataatcataaatgactcagttta 148  Q
    |||||||||||||| |||| |||||||||||||||||||| ||||||    
T  5361909 ctaaatatatgttaaaaatggtatataatcataaatgacttagttta 5361955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 24719868 - 24719806
Alignment:
Q  5 aaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatc 67  Q
    ||||||| ||||| ||||||||||||| |||  | || |||||||||||||||||||||||||    
T  24719868 aaaatcgaaatcacaatcgaaggattttactcgattacttttgtagaatcgatataagaaatc 24719806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 141
Target Start/End: Complemental strand, 36121043 - 36120968
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgact 141  Q
    |||||||||||||||| ||| ||||||  ||  |||| |||||||||| |||||||| ||||||| ||||||||||||    
T  36121043 aatcaaaatcgatggattttaccaaaaataa--taatactaaatatattttataaatggtatatagtcataaatgact 36120968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 4157322 - 4157269
Alignment:
Q  3 gtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcga 56  Q
    |||||||||||||||| |||||| ||||| ||| ||||| ||||||||||||||    
T  4157322 gtaaaatcgcaatcaagatcgaaagattttactcaactacttttgtagaatcga 4157269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 4157609 - 4157556
Alignment:
Q  3 gtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcga 56  Q
    |||||||||||||||| |||||| ||||| ||| ||||| ||||||||||||||    
T  4157609 gtaaaatcgcaatcaagatcgaaagattttactcaactacttttgtagaatcga 4157556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 9911243 - 9911308
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    ||||||||||||||| |||| |||||||||| |||  |  | ||||||||||||||||||||||||    
T  9911243 tcgtaaaatcgcaataaaaaacgaaggattttactcgagaacttttgtagaatcgatataagaaat 9911308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 23064793 - 23064858
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    ||||||||||||||||||||| ||||||||| | | ||  | |||||||||||||||||| |||||    
T  23064793 tcgtaaaatcgcaatcaaaattgaaggattttattcaaggacttttgtagaatcgatataggaaat 23064858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 256
Target Start/End: Complemental strand, 24719695 - 24719626
Alignment:
Q  187 tggacaaaatccttaaaaaccgtttaaaatcctgcaattttgtatgaatttcacgattttgtgcgatttt 256  Q
    |||||| ||| ||||||| ||  |||||||||||| |||||||||| |||||||| ||| ||||||||||    
T  24719695 tggacacaattcttaaaagcccattaaaatcctgcgattttgtatgtatttcacgttttcgtgcgatttt 24719626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 5375962 - 5375903
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatata 60  Q
    ||||||||||||||||||||||||||||||| ||| ||  | || ||||||||| |||||    
T  5375962 tcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacttctgtagaatctatata 5375903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 128
Target Start/End: Original strand, 8020731 - 8020774
Alignment:
Q  85 ccaaaacaaaagtaatgctaaatatatgttataaattgtatata 128  Q
    ||||||||||| ||||| |||||||||||||||||||| |||||    
T  8020731 ccaaaacaaaaataatgttaaatatatgttataaattgcatata 8020774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 8889512 - 8889462
Alignment:
Q  3 gtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaat 53  Q
    |||||||||||| |||||||||||||| | ||| ||||| |||||||||||    
T  8889512 gtaaaatcgcaaccaaaatcgaaggatcttactcaactacttttgtagaat 8889462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 17466376 - 17466311
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    ||||||||| |||| |||||| ||| ||||  ||| ||||| |||||| |||||||||||||||||    
T  17466376 tcgtaaaattgcaaacaaaattgaaagattatactcaactacttttgtggaatcgatataagaaat 17466311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 36121120 - 36121055
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    ||||||||||| ||||||||||||| ||||| ||| ||  | |||||||| ||||||||| |||||    
T  36121120 tcgtaaaatcggaatcaaaatcgaaagattttactcaaggacttttgtagtatcgatataggaaat 36121055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 7045238 - 7045202
Alignment:
Q  4 taaaatcgcaatcaaaatcgaaggatttgacttaact 40  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  7045238 taaaatcgcaatcaaaatcgaaggattttactcaact 7045202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 148
Target Start/End: Complemental strand, 9770332 - 9770249
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagttta 148  Q
    |||||||||||||| | ||| || ||| |||| |||| ||||||||||||||| ||| ||||||| |||||| | ||| ||||||    
T  9770332 aatcaaaatcgatgaattttacccaaa-aaaattaatactaaatatatgttatgaatggtatatagtcataagtaacttagttta 9770249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 8e-58; HSPs: 52)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 21157525 - 21157783
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataaga----aatcaaaatcgatggactttgccaaaacaaaag 96  Q
    |||||||||| |||||||||| ||||||||| | | ||||| |||||||||||| ||||| ||    || ||||||| ||||| | | ||||||||||||    
T  21157525 tcgtaaaatctcaatcaaaattgaaggattttattcaactacttttgtagaatctatataggatggtaaacaaaatcaatggattctaccaaaacaaaag 21157624  T
Q  97 taatgctaaatatatgttataaattgtatataatcataaatgactcagtttaaagtccacaaaatacttatacataaatgattnnnnnnntggacaaaat 196  Q
    |||||||||||||||||||||||| |||||||||| |||||||||| |||||||||| ||||||||||||||||||||||| |       ||||||||||    
T  21157625 taatgctaaatatatgttataaatggtatataatcgtaaatgactc-gtttaaagtctacaaaatacttatacataaatgactcaaaaactggacaaaat 21157723  T
Q  197 ccttaaaaaccgtttaaaatcctgcaattttgtatgaatttcacgattttgtgcgatttt 256  Q
     ||| |||| | |||||||| |||| ||||||||||||||||||| |||||||| |||||    
T  21157724 tcttcaaaatcctttaaaattctgcgattttgtatgaatttcacggttttgtgcaatttt 21157783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 26565380 - 26565648
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatc--------------aaaatcgatggactttgcc 86  Q
    ||||||||||| ||||||||||||||||||| ||| ||||| |||||||||||| |||||| |||||              ||||| |||||| ||| ||    
T  26565380 tcgtaaaatcgtaatcaaaatcgaaggattttactcaactacttttgtagaatcaatataaaaaatcgtaaaattgcaatcaaaattgatggattttacc 26565479  T
Q  87 aaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagtttaaagtccacaaaatacttatacataaatgattnnnnnnn 186  Q
    ||||||||| ||||| ||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |           
T  26565480 aaaacaaaaataatgttaa-tatatgttataaactgtatatagtcataaatgactcagtttaaagtccacaaaatacttatacataaatgact-aaaaag 26565577  T
Q  187 tggacaaaatccttaaaaaccgtttaaaatcctgcaattttgtatgaatttcacgattttg-tgcgatttt 256  Q
    | |||||||| |||  ||||| |||||||||||   ||||||||||||||||| ||||||| |||||||||    
T  26565578 tagacaaaatacttccaaaccctttaaaatcctaggattttgtatgaatttcatgattttgatgcgatttt 26565648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 6 - 247
Target Start/End: Complemental strand, 30294538 - 30294291
Alignment:
Q  6 aaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataaga--------------aatcaaaatcgatggactttgccaaaac 91  Q
    ||||| |||||||||||||||||||| ||||||||| |||| ||||||||||| ||||              ||||||| |||||||| ||| |||||||    
T  30294538 aaatcacaatcaaaatcgaaggattttacttaactacttttatagaatcgataaaagaaatcctaaaatcacaatcaaactcgatggattttaccaaaac 30294439  T
Q  92 aaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagtttaaagtccacaaaatacttatacataaatgattnnnnnnntggac 191  Q
    |||  ||||| |||||||||||||||||||||        ||||||||| |||| |||||||||||||||| |||||||||||||| |       |||||    
T  30294438 aaagataatgttaaatatatgttataaattgt--------ataaatgacccagtataaagtccacaaaatagttatacataaatgactaaaaaaatggac 30294347  T
Q  192 aaaatccttaaaaaccgtttaaaatcctgcaattttgtatgaatttcacgattttg 247  Q
    |||||| || |||||| |||||||| ||   |||||||||||||||||||||||||    
T  30294346 aaaatctttcaaaaccctttaaaattctatgattttgtatgaatttcacgattttg 30294291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 85 - 177
Target Start/End: Original strand, 17809057 - 17809149
Alignment:
Q  85 ccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagtttaaagtccacaaaatacttatacataaatga 177  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| || ||   |||||||||||||||||||||    
T  17809057 ccaaaacaaaaataatgctaaatatatgttataaattgcatataatcataaatgactcagttttaaatctgaaaaatacttatacataaatga 17809149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 86 - 177
Target Start/End: Original strand, 1981266 - 1981358
Alignment:
Q  86 caaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgact-cagtttaaagtccacaaaatacttatacataaatga 177  Q
    |||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||  |||| |||||||||||||||| |||||||||||||    
T  1981266 caaaacaaaaataatgctaaatatatgttataaattgcatatagtcataaatgactaaagttcaaagtccacaaaatacatatacataaatga 1981358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 25842653 - 25842765
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgact-cagtttaaagtccacaaaata 162  Q
    |||||||||||| ||| | | ||||||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||  |||| |||||||||||||||    
T  25842653 aatcaaaatcga-ggattctaccaaaacaaaaataatgttaaatatatgttataaattgcatatagtcataaatgactaaagttcaaagtccacaaaata 25842751  T
Q  163 cttatacataaatg 176  Q
    | || |||||||||    
T  25842752 catacacataaatg 25842765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 23618351 - 23618463
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgact-cagtttaaagtccacaaaata 162  Q
    |||||||||||| ||| | | ||||||||||| ||||| ||||||||| |||||||||| ||||| ||||||||||||  |||| |||||| ||||||||    
T  23618351 aatcaaaatcga-ggattctaccaaaacaaaaataatgttaaatatatattataaattgcatatagtcataaatgactaaagttcaaagtctacaaaata 23618449  T
Q  163 cttatacataaatg 176  Q
    | ||||||||||||    
T  23618450 catatacataaatg 23618463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 39182453 - 39182388
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    |||||||||||||| |||||||||||||||| ||| ||||| ||||||||||||||||||||||||    
T  39182453 tcgtaaaatcgcaaccaaaatcgaaggattttactcaactacttttgtagaatcgatataagaaat 39182388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 64 - 148
Target Start/End: Complemental strand, 5058749 - 5058666
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagttta 148  Q
    |||||||||||||||||||| |||||| | || |||| ||||||||||||||||||| ||||||| |||||||||||| ||||||    
T  5058749 aatcaaaatcgatggactttaccaaaaaataa-taatactaaatatatgttataaatggtatatagtcataaatgacttagttta 5058666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 8329876 - 8329942
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatc 67  Q
    |||||||||||||||||||||| |||||||| ||| ||||| ||||||||||| |||||||||||||    
T  8329876 tcgtaaaatcgcaatcaaaatcaaaggattttactcaactacttttgtagaattgatataagaaatc 8329942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 44944677 - 44944837
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat--------------caaaatcgatggactttgcc 86  Q
    ||||||||||||||| |||||||||  |||| ||||||  | ||||||||||||||||||||||||              |||||||||| |||||| ||    
T  44944677 tcgtaaaatcgcaattaaaatcgaacaattttacttaaggacttttgtagaatcgatataagaaattgtaaaatcgcaatcaaaatcgatagactttacc 44944776  T
Q  87 aaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagttta 148  Q
    |||| | || |||| ||||||||||||||||||| ||||||| |||||||||||| ||||||    
T  44944777 aaaaaataa-taatactaaatatatgttataaatggtatatagtcataaatgacttagttta 44944837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 64 - 141
Target Start/End: Original strand, 20570794 - 20570870
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgact 141  Q
    |||||||||||||||||||| |||||| | || |||| ||||||||||||||||||| ||||||| ||||||||||||    
T  20570794 aatcaaaatcgatggactttaccaaaaaagaa-taatactaaatatatgttataaatggtatatagtcataaatgact 20570870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 8346363 - 8346430
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatca 68  Q
    |||||| ||||||||||||||| |||||||| ||| ||||| ||||||||||| ||||||||||||||    
T  8346363 tcgtaatatcgcaatcaaaatcaaaggattttactcaactacttttgtagaattgatataagaaatca 8346430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 14055552 - 14055489
Alignment:
Q  3 gtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    |||||||||||| |||||||||||||||| ||| ||||| |||||||||| |||||||||||||    
T  14055552 gtaaaatcgcaaccaaaatcgaaggattttactcaactacttttgtagaaacgatataagaaat 14055489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 14365580 - 14365517
Alignment:
Q  3 gtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    |||||||||||| |||||||||||||||| ||| ||||| |||||||||| |||||||||||||    
T  14365580 gtaaaatcgcaaccaaaatcgaaggattttactcaactacttttgtagaaacgatataagaaat 14365517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 1977845 - 1977780
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatc 67  Q
    ||||||||||||||||||||||||||||||| ||| || | ||||| ||||||||||||||||||||    
T  1977845 tcgtaaaatcgcaatcaaaatcgaaggattttactcaa-ttattttttagaatcgatataagaaatc 1977780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 4247653 - 4247586
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatca 68  Q
    ||||||||||||||||||| || |||||||| ||| ||  | ||||||||||||||||||||||||||    
T  4247653 tcgtaaaatcgcaatcaaattcaaaggattttactcaaggatttttgtagaatcgatataagaaatca 4247586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 8329814 - 8329877
Alignment:
Q  4 taaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatc 67  Q
    |||||| ||||||||||| ||||||||| ||| ||||| ||||||||||| |||||||||||||    
T  8329814 taaaattgcaatcaaaattgaaggattttactcaactacttttgtagaattgatataagaaatc 8329877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 21846282 - 21846345
Alignment:
Q  4 taaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatc 67  Q
    ||||||||||| |||||||||||||||| | | ||||| |||| ||||||||||||||||||||    
T  21846282 taaaatcgcaaccaaaatcgaaggattttaatcaactacttttatagaatcgatataagaaatc 21846345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 8254028 - 8254143
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatata---atcataaatgact-cagtttaaagtccacaaa 159  Q
    |||||||||||| ||| | | ||||||||||| ||||| |||||||||||||||||||| |||||   |||||||||||||  |||| |||||  |||||    
T  8254028 aatcaaaatcga-ggattctaccaaaacaaaaataatgttaaatatatgttataaattgcatatagtcatcataaatgactaaagttcaaagtgaacaaa 8254126  T
Q  160 atacttatacataaatg 176  Q
    |||| ||| ||||||||    
T  8254127 atacatatgcataaatg 8254143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 177
Target Start/End: Original strand, 8629670 - 8629761
Alignment:
Q  85 ccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgac-tcagtttaaagtccacaaaatacttatacataaatga 177  Q
    ||||||||||| ||||||||||||||||||||||||||   ||| ||||||||  | | | || |||||||||||||||| |||||||||||||    
T  8629670 ccaaaacaaaaataatgctaaatatatgttataaattg--catagtcataaatatcttaaattcaaagtccacaaaatacatatacataaatga 8629761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 22687099 - 22687165
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatc 67  Q
    |||||||||| ||| |||||| |||| |||| ||| ||||| |||||||||||||||||||||||||    
T  22687099 tcgtaaaatcacaaccaaaattgaagaattttactcaactacttttgtagaatcgatataagaaatc 22687165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 5715582 - 5715517
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    |||||||||||||||||||||||| |||||| ||| ||  | |||||||||||||||||| |||||    
T  5715582 tcgtaaaatcgcaatcaaaatcgagggattttactcaaggacttttgtagaatcgatataggaaat 5715517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 64 - 148
Target Start/End: Complemental strand, 4247576 - 4247493
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagttta 148  Q
    |||||||||||||||| ||| || ||| |||| |||| |||||||||||||| ||||  |||||| |||||||||||| ||||||    
T  4247576 aatcaaaatcgatggattttacctaaaaaaaa-taatactaaatatatgttacaaatgatatatagtcataaatgacttagttta 4247493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 64 - 148
Target Start/End: Complemental strand, 17811568 - 17811484
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagttta 148  Q
    |||||||||||||||| ||| || ||| || | ||||  ||||||||| |||||||| ||||||||| |||||||||| ||||||    
T  17811568 aatcaaaatcgatggattttacccaaaaaatattaatattaaatatattttataaatggtatataattataaatgacttagttta 17811484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 143 - 260
Target Start/End: Original strand, 24915791 - 24915908
Alignment:
Q  143 agtttaaagtccacaaaatacttatacataaatgattnnnnnnntggacaaaatccttaaaaaccgtttaaaatcctgcaattttgtatgaatttcacga 242  Q
    ||||||||||||||||||||||||||| |||||||||       |||||||||| |||  ||||  |||||||  ||||  |||||| || |||| ||||    
T  24915791 agtttaaagtccacaaaatacttatacgtaaatgattaaaaaaatggacaaaattcttcgaaactctttaaaactctgcgtttttgtttggattttacga 24915890  T
Q  243 ttttgtgcgattttgatg 260  Q
    |||||| |||| ||||||    
T  24915891 ttttgtacgatcttgatg 24915908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 4575027 - 4574968
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatata 60  Q
    |||||||||||||||||||||| ||| |||  ||| ||||| ||||||||||||||||||    
T  4575027 tcgtaaaatcgcaatcaaaatcaaagaattctactcaactacttttgtagaatcgatata 4574968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 148
Target Start/End: Complemental strand, 5715469 - 5715426
Alignment:
Q  105 aatatatgttataaattgtatataatcataaatgactcagttta 148  Q
    |||||||||||||||| |||||||||||||||||||| ||||||    
T  5715469 aatatatgttataaatggtatataatcataaatgacttagttta 5715426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 17741941 - 17741886
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcga 56  Q
    ||||||||| ||||||||||| ||||||||| ||||||||| |||| |||||||||    
T  17741941 tcgtaaaattgcaatcaaaattgaaggattttacttaactacttttttagaatcga 17741886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 17811645 - 17811586
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatata 60  Q
    ||||||||||||||||||||||||| ||||| ||| ||  | ||||||||||||||||||    
T  17811645 tcgtaaaatcgcaatcaaaatcgaaagattttactcaaggacttttgtagaatcgatata 17811586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 148
Target Start/End: Original strand, 24725418 - 24725469
Alignment:
Q  97 taatgctaaatatatgttataaattgtatataatcataaatgactcagttta 148  Q
    |||| ||||||||||||||||||| ||||||| |||||||||||| ||||||    
T  24725418 taatactaaatatatgttataaatggtatatagtcataaatgacttagttta 24725469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 8343634 - 8343700
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatc 67  Q
    ||||||||  |||||||||||||||| |||| ||| ||||| ||||||||||| ||||||| |||||    
T  8343634 tcgtaaaaatgcaatcaaaatcgaagtattttactcaactacttttgtagaattgatataaaaaatc 8343700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 20570720 - 20570782
Alignment:
Q  4 taaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    |||||||||||||||||| ||| ||||| ||| ||  | ||||||||||||||||||||||||    
T  20570720 taaaatcgcaatcaaaattgaaagattttactcaaggacttttgtagaatcgatataagaaat 20570782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 24725307 - 24725369
Alignment:
Q  4 taaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    ||||||||||||||||||| |||||||| ||| ||  | |||||||||||||||||| |||||    
T  24725307 taaaatcgcaatcaaaatcaaaggattttactcaaggacttttgtagaatcgatataggaaat 24725369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 7730191 - 7730256
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    |||||||||||||| |||||||||| | ||| ||| ||||| ||||||| ||| ||||||||||||    
T  7730191 tcgtaaaatcgcaaccaaaatcgaatggttttactcaactacttttgtataattgatataagaaat 7730256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 14055433 - 14055388
Alignment:
Q  103 taaatatatgttataaattgtatataatcataaatgactcagttta 148  Q
    |||||||||||||||||| ||||||| |||||||||||| ||||||    
T  14055433 taaatatatgttataaatggtatatagtcataaatgacttagttta 14055388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 14365461 - 14365416
Alignment:
Q  103 taaatatatgttataaattgtatataatcataaatgactcagttta 148  Q
    |||||||||||||||||| ||||||| |||||||||||| ||||||    
T  14365461 taaatatatgttataaatggtatatagtcataaatgacttagttta 14365416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 24989606 - 24989670
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    ||||||||| ||||||||||||||||||||| || |||  | |||||||||||||||||| |||||    
T  24989606 tcgtaaaatggcaatcaaaatcgaaggattttac-taaggacttttgtagaatcgatataggaaat 24989670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 148
Target Start/End: Original strand, 24990010 - 24990063
Alignment:
Q  95 agtaatgctaaatatatgttataaattgtatataatcataaatgactcagttta 148  Q
    |||||| ||||||||||||||||||| ||||||| |||||||||| | ||||||    
T  24990010 agtaatactaaatatatgttataaatagtatatagtcataaatgatttagttta 24990063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 4574935 - 4574879
Alignment:
Q  66 tcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattg 122  Q
    ||||||||||| || ||| |||||| |||| ||||||| ||||||||||||||||||    
T  4574935 tcaaaatcgatagattttaccaaaataaaaataatgcttaatatatgttataaattg 4574879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 8346308 - 8346364
Alignment:
Q  11 gcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatc 67  Q
    |||| |||||||||||||||| ||| ||||| |||| |||||| |||||||||||||    
T  8346308 gcaaacaaaatcgaaggattttactcaactacttttatagaattgatataagaaatc 8346364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 8304383 - 8304324
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatata 60  Q
    |||||||||| |||||||||||||||||||| ||| ||  | ||||||||||| ||||||    
T  8304383 tcgtaaaatcacaatcaaaatcgaaggattttactcaaggacttttgtagaattgatata 8304324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 7307197 - 7307140
Alignment:
Q  85 ccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactca 143  Q
    ||||||||||| ||||| |||||||||| ||||||||| ||||| || |||||||||||    
T  7307197 ccaaaacaaaaataatgttaaatatatg-tataaattgcatatagtcgtaaatgactca 7307140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 8304252 - 8304178
Alignment:
Q  104 aaatatatgttataaattgtatataatcataaatgact-cagtttaaagtccacaaaatacttatacataaatga 177  Q
    ||||||||||||||||||| ||||| ||||||||| ||  |||| |||||||| ||||| | |||| ||||||||    
T  8304252 aaatatatgttataaattgcatatagtcataaatgtctaaagttcaaagtccaaaaaatgcatatatataaatga 8304178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 258
Target Start/End: Original strand, 23618594 - 23618640
Alignment:
Q  212 aaaatcctgcaattttgtatgaatttcacgattttgtgcgattttga 258  Q
    |||||||| | |||||| ||| |||||||||||||||||||||||||    
T  23618594 aaaatcctacgattttgaatggatttcacgattttgtgcgattttga 23618640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 256
Target Start/End: Original strand, 25842884 - 25842950
Alignment:
Q  190 acaaaatccttaaaaaccgtttaaaatcctgcaattttgtatgaatttcacgattttgtgcgatttt 256  Q
    ||||||||||| |||| |  | |||||| ||| |||||| ||||||||||||||||||||| |||||    
T  25842884 acaaaatccttcaaaatccatcaaaatcttgcgattttgaatgaatttcacgattttgtgcaatttt 25842950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 148
Target Start/End: Original strand, 26281256 - 26281302
Alignment:
Q  102 ctaaatatatgttataaattgtatataatcataaatgactcagttta 148  Q
    ||||||||| ||||||||| ||||||| |||||||||||| ||||||    
T  26281256 ctaaatataagttataaatggtatatagtcataaatgacttagttta 26281302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 148
Target Start/End: Complemental strand, 27221597 - 27221555
Alignment:
Q  106 atatatgttataaattgtatataatcataaatgactcagttta 148  Q
    ||||||||||||||| ||||||| |||||||||||| ||||||    
T  27221597 atatatgttataaatggtatatagtcataaatgacttagttta 27221555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #49
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 27221711 - 27221681
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggattt 31  Q
    |||||||||||||||||||||||||||||||    
T  27221711 tcgtaaaatcgcaatcaaaatcgaaggattt 27221681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #50
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 27509260 - 27509309
Alignment:
Q  17 aaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    ||||| ||||||||| ||| ||||| |||| |||||||||||||||||||    
T  27509260 aaaattgaaggattttactcaactacttttatagaatcgatataagaaat 27509309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #51
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 5058825 - 5058766
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataa 61  Q
    ||||||||| ||||||||||||||||||||| | | ||  |||||||| ||||||||||||    
T  5058825 tcgtaaaattgcaatcaaaatcgaaggattttaatcaaggaattttgt-gaatcgatataa 5058766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #52
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 23618265 - 23618317
Alignment:
Q  5 aaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgat 57  Q
    |||||||||||||||||||||| |||| ||| ||  | |||||||||||||||    
T  23618265 aaaatcgcaatcaaaatcgaagaattttactcaaggacttttgtagaatcgat 23618317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 47)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 25538977 - 25539224
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat--------------caaaatcgatggactttgcc 86  Q
    |||||||||||||||||||||  |||||||| ||| ||||| ||||||||||||||||||| ||||              |||||||||| || ||| ||    
T  25538977 tcgtaaaatcgcaatcaaaattaaaggattttactgaactacttttgtagaatcgatataaaaaattgtaaaattgcaatcaaaatcgatagattttacc 25539076  T
Q  87 aaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagtttaaagtccacaaaatacttatacataaatgattnnnnnnn 186  Q
    |||||| || ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |           
T  25539077 aaaacagaaataatgctaaatatatgttatatattgtatatagtcataaatgactcagtttaaagtccacaaaatacttataaataaatgactaaaaaaa 25539176  T
Q  187 tggacaaaatccttaaaaaccgtttaaaatcctgcaattttgtatgaa 234  Q
    |||||||||| ||  |||||| ||||||||||||| ||||||||||||    
T  25539177 tggacaaaattctacaaaaccctttaaaatcctgcgattttgtatgaa 25539224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 64 - 233
Target Start/End: Complemental strand, 19492153 - 19491983
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaa-agtaatgctaaatatatgttataaattgtatataatcataaatgactcagtttaaagtccacaaaata 162  Q
    |||||||||||||||| ||| |||||| ||| | |||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||| ||||    
T  19492153 aatcaaaatcgatggattttaccaaaaaaaataataatgctaaatatatgttataaattgtatatagtcataaataactctgtttaaagtccacagaata 19492054  T
Q  163 cttatacataaatgattnnnnnnntggacaaaatccttaaaaaccgtttaaaatcctgcaattttgtatga 233  Q
    ||||||||||||||| |       |||| ||||| ||| |||||| ||||||||||||| |||||||||||    
T  19492053 cttatacataaatgactaacaaaatggataaaattcttcaaaaccctttaaaatcctgcgattttgtatga 19491983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 64 - 177
Target Start/End: Complemental strand, 27407011 - 27406898
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagtttaaagtccacaaaatac 163  Q
    ||||||||| |||||| ||  ||||||||||| ||||||||||||||| ||||||| |||||||| | ||||||||||||||||||||||||||||||||    
T  27407011 aatcaaaattgatggatttcaccaaaacaaaaataatgctaaatatatattataaactgtatatagtaataaatgactcagtttaaagtccacaaaatac 27406912  T
Q  164 ttatacataaatga 177  Q
     |||||||||||||    
T  27406911 atatacataaatga 27406898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 177
Target Start/End: Complemental strand, 16767079 - 16766894
Alignment:
Q  4 taaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatc--------------aaaatcgatggactttgccaaa 89  Q
    |||||||||||||||||| ||||||||| ||| ||||| |||| ||||||||||||||||||||              |||||| | ||| ||| |||||    
T  16767079 taaaatcgcaatcaaaattgaaggattttactcaactacttttatagaatcgatataagaaatcgtaaaatcgcaatcaaaatcaaagga-tttaccaaa 16766981  T
Q  90 acaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagtttaaagtccacaaaatacttatacataaatga 177  Q
    |||||| ||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  16766980 acaaaaataatgctaaatatttgttataaattgtatacagtcataaatgactcagtttaaagtccacaaaaaactta-acataaatga 16766894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 64 - 229
Target Start/End: Original strand, 5395431 - 5395596
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagtttaaagtccacaaaatac 163  Q
    ||||||||||||  || ||| ||||||||||| ||||| | || ||||||||||||||||||||| ||||||||||| || |||||||||||| ||||||    
T  5395431 aatcaaaatcgaaagattttaccaaaacaaaaataatgttcaaaatatgttataaattgtatatagtcataaatgacccaatttaaagtccaccaaatac 5395530  T
Q  164 -ttatacataaatgattnnnnnnntggacaaaatccttaaaaaccgtttaaaatcctgcaattttgt 229  Q
     |||||||||||||| |       ||||||||||| || || ||| |||||||||||||||||||||    
T  5395531 tttatacataaatgact-aaaaaatggacaaaatcatttaagaccctttaaaatcctgcaattttgt 5395596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 64 - 177
Target Start/End: Complemental strand, 41002232 - 41002119
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgact-cagtttaaagtccacaaaata 162  Q
    |||||||||||| ||| | | ||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||  |||| |||||||||||||||    
T  41002232 aatcaaaatcga-ggattctaccaaaacaaaaataatgctaaatatatgttataaattgcatatagtcataaatgactaaagttcaaagtccacaaaata 41002134  T
Q  163 cttatacataaatga 177  Q
    | |||||||||||||    
T  41002133 catatacataaatga 41002119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 64 - 256
Target Start/End: Complemental strand, 31023522 - 31023332
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagtttaaagtccacaaaatac 163  Q
    |||||||||||||||| ||| |||||| |||| ||||| |||||||||||||||||| ||| ||| |||||||  | | ||||| |||||||| ||||||    
T  31023522 aatcaaaatcgatggattttaccaaaataaaaataatgttaaatatatgttataaatagtaaatagtcataaactaattagttt-aagtccaccaaatac 31023424  T
Q  164 ttatacataaatgattnnnnnnntggacaaaatccttaaaaaccgtttaaaatcctgcaattttgtatgaatttcacgattttgtgcgatttt 256  Q
    ||||||| |||||| |       | |||||||| ||| ||| || ||||||||||| | |||||||||  |||||| ||||||||||||||||    
T  31023423 ttatacaaaaatgactaaaaaatt-gacaaaattcttcaaacccttttaaaatcctacgattttgtatagatttcaagattttgtgcgatttt 31023332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 64 - 177
Target Start/End: Complemental strand, 974545 - 974431
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgact--cagtttaaagtccacaaaat 161  Q
    |||||||||||| ||| | | ||||||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||   |||| ||||||||||||||    
T  974545 aatcaaaatcga-ggattctaccaaaacaaaaataatgttaaatatatgttataaattgcatatagtcataaatgacttaaagttcaaagtccacaaaat 974447  T
Q  162 acttatacataaatga 177  Q
    || |||||||||||||    
T  974446 acatatacataaatga 974431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 64 - 160
Target Start/End: Complemental strand, 34841801 - 34841705
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagtttaaagtccacaaaa 160  Q
    |||||||||||||||| | |  | |||||||| ||||  |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  34841801 aatcaaaatcgatggattctatccaaacaaaaataataataaatatatgttataaattgtatatagtcataaataactcagtttaaagtccacaaaa 34841705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 64 - 177
Target Start/End: Original strand, 21869243 - 21869357
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgact--cagtttaaagtccacaaaat 161  Q
    |||||||||||||| | | | ||||||||||| | |||||||||||||||||||||||| ||||| |||||||| |||   |||| ||||||||||||||    
T  21869243 aatcaaaatcgatg-attctaccaaaacaaaaattatgctaaatatatgttataaattgcatatagtcataaataacttaaagttcaaagtccacaaaat 21869341  T
Q  162 acttatacataaatga 177  Q
    || |||||||||||||    
T  21869342 acatatacataaatga 21869357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 62 - 255
Target Start/End: Complemental strand, 15627966 - 15627771
Alignment:
Q  62 gaaatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagtttaaagtccacaaaat 161  Q
    ||||| |||||||||||| |||  ||| | ||||  || | ||| |||||||| |||||| |||||  || ||||||||| |||||||||| | ||||||    
T  15627966 gaaattaaaatcgatggattttatcaacaaaaaaaaaaggttaagtatatgttttaaattatatattgtcgtaaatgacttagtttaaagtgcgcaaaat 15627867  T
Q  162 acttatacataaatgattnnnnnnn--tggacaaaatccttaaaaaccgtttaaaatcctgcaattttgtatgaatttcacgattttgtgcgattt 255  Q
    ||||||| |||||||| |         ||||||||||||||  ||||| ||||||||||||  ||||||||||||||||||  |||||||||||||    
T  15627866 acttatatataaatgactaaaaaaaaatggacaaaatcctttgaaaccctttaaaatcctgtgattttgtatgaatttcacagttttgtgcgattt 15627771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 19245886 - 19245690
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataaga-------------aatca-----aaatcgatggactt 82  Q
    |||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||| ||             ||||      ||||||||||| |     
T  19245886 tcgtaaaatcgcaatcaaaatctaaggattttacttaactacttttgtagaatcgatataggatagtaaaatcgaaaatcgtaatcaaatcgatggattc 19245787  T
Q  83 tgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactc--agtttaaagtccacaaaatacttatacataaatga 177  Q
    | |||||| |||| ||||| |||||||||| || |||||| || || |||||||||||||  ||||||||||||||||||||||| | |||||||||    
T  19245786 taccaaaataaaaataatgttaaatatatgatagaaattgcatgtagtcataaatgactcaaagtttaaagtccacaaaatacttttgcataaatga 19245690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 4 - 177
Target Start/End: Complemental strand, 8428516 - 8428332
Alignment:
Q  4 taaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatc--------------aaaatcgatggactttgccaaa 89  Q
    ||||||||||||||||||||||||||||  || ||||| |||||||||||| |||| | |||||               ||||||||| | | | |||||    
T  8428516 taaaatcgcaatcaaaatcgaaggattttgctcaactatttttgtagaatcaatatcaaaaatcgtaaaatcgcaatacaaatcgatgaattataccaaa 8428417  T
Q  90 acaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagtttaaagtccacaaaatacttatacataaatga 177  Q
    |||||| ||||||||| ||||| ||||||||| |||||| |||||||| |||| ||   |||||||||||||| ||||||||||||||    
T  8428416 acaaaaataatgctaactatatattataaattatatatagtcataaattactcggt---aagtccacaaaatatttatacataaatga 8428332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 34578096 - 34577986
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgact-cagtttaaagtccacaaaata 162  Q
    |||||||||||| ||| | | ||||||||||| ||||| ||||||||||||||||||||   ||| ||||||||||||  |||| |||||||||||||||    
T  34578096 aatcaaaatcga-ggattctaccaaaacaaaaataatgttaaatatatgttataaattg--catagtcataaatgactaaagttcaaagtccacaaaata 34578000  T
Q  163 cttatacataaatg 176  Q
    | ||||||||||||    
T  34577999 catatacataaatg 34577986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 20034144 - 20034255
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgact-cagtttaaagtccacaaaata 162  Q
    |||||||||||| ||| | | ||||||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||  |||| ||| |||||||||||    
T  20034144 aatcaaaatcga-ggattctaccaaaacaaaaataatgttaaatatatgttataaattgcatatactcataaatgactaaagttcaaaatccacaaaata 20034242  T
Q  163 cttatacataaatg 176  Q
    | | ||||||||||    
T  20034243 cat-tacataaatg 20034255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 91 - 175
Target Start/End: Complemental strand, 26251708 - 26251621
Alignment:
Q  91 caaaagtaatgctaaatatatgttataaattgtatataatcataaatgactc---agtttaaagtccacaaaatacttatacataaat 175  Q
    ||||| ||||| |||||||||||||||||||| ||||| |||||||||||||   ||||| ||||||||||||||| |||| ||||||    
T  26251708 caaaaataatggtaaatatatgttataaattgcatatagtcataaatgactcaaaagtttcaagtccacaaaatacctataaataaat 26251621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 284
Target Start/End: Original strand, 5395613 - 5395685
Alignment:
Q  212 aaaatcctgcaattttgtatgaatttcacgattttgtgcgattttgatggacttttacaaggattttgcctat 284  Q
    |||||||||||||||||| ||||||||| ||||||||| |||||||||| | |||||| | ||||||||||||    
T  5395613 aaaatcctgcaattttgtttgaatttcatgattttgtgagattttgatgcatttttactaagattttgcctat 5395685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 174
Target Start/End: Complemental strand, 7301994 - 7301884
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgact-cagtttaaagtccacaaaata 162  Q
    |||||||||||| ||| | | |||||| |||| ||||| |||||||||||||||||||| ||||  ||||||||||||  |||| |||||||||||||||    
T  7301994 aatcaaaatcga-ggattctaccaaaataaaaataatgttaaatatatgttataaattgcatatggtcataaatgactaaagttcaaagtccacaaaata 7301896  T
Q  163 cttatacataaa 174  Q
    | ||| ||||||    
T  7301895 catatgcataaa 7301884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 19262148 - 19262213
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    ||||||||||||||||||||||||| ||||| ||| ||  | ||||||||||||||||||||||||    
T  19262148 tcgtaaaatcgcaatcaaaatcgaaagattttactcaaggacttttgtagaatcgatataagaaat 19262213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 138 - 255
Target Start/End: Original strand, 13502947 - 13503063
Alignment:
Q  138 gactcagtttaaagtccacaaaatacttatacataaatgattnnnnnnntggacaaaatccttaaaaaccgtttaaaatcctgcaattttgtatgaattt 237  Q
    ||||||||||||| ||||||||||||||||||||||||||         || || |||||||  |||||| ||||||||||||  |||||| ||| ||||    
T  13502947 gactcagtttaaactccacaaaatacttatacataaatga-caaaaaaatgaactaaatcctccaaaaccttttaaaatcctgtgattttgcatggattt 13503045  T
Q  238 cacgattttgtgcgattt 255  Q
    ||||| ||||||||||||    
T  13503046 cacgagtttgtgcgattt 13503063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 168
Target Start/End: Original strand, 27524038 - 27524122
Alignment:
Q  85 ccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgact-cagtttaaagtccacaaaatacttata 168  Q
    ||||||||||| ||||| ||||||||| |||||||||| ||||| |||||||||| |  |||| |||||||||||||||| ||||    
T  27524038 ccaaaacaaaaataatgttaaatatatattataaattgcatatattcataaatgattaaagttcaaagtccacaaaatacatata 27524122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 141
Target Start/End: Original strand, 35565866 - 35565939
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgact 141  Q
    |||||||||||||||| ||| |||||| ||||    | ||||||||||||||||||||||||||| ||||||||||||    
T  35565866 aatcaaaatcgatggattttaccaaaaaaaaa----tactaaatatatgttataaattgtatatagtcataaatgact 35565939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 974635 - 974576
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatata 60  Q
    ||||||||||||||||||||||||||||||| ||| ||  | ||||||||||||||||||    
T  974635 tcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatata 974576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 172
Target Start/End: Complemental strand, 24474037 - 24473931
Alignment:
Q  68 aaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgact--cagtttaaagtccacaaaatactt 165  Q
    ||||||| |||| | | ||||||||||| ||||| |||||| ||| ||||||||| ||||| | ||||||||||   |||| ||| ||||||||||||||    
T  24474037 aaaatcgttggattctaccaaaacaaaattaatgataaatagatgatataaattgcatatagttataaatgactaaaagttaaaattccacaaaatactt 24473938  T
Q  166 atacata 172  Q
    |||||||    
T  24473937 atacata 24473931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 1405077 - 1405015
Alignment:
Q  4 taaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    |||||||||||||||||||||||||||| ||| ||  | |||||||||||||||||| |||||    
T  1405077 taaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtagaatcgatataggaaat 1405015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 20064020 - 20063955
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    |||||||||||||||||||||||||| |||| ||| ||  | |||||||||||||||||| |||||    
T  20064020 tcgtaaaatcgcaatcaaaatcgaagaattttactcaaggacttttgtagaatcgatataggaaat 20063955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 148
Target Start/End: Original strand, 31237885 - 31237969
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgc-taaatatatgttataaattgtatataatcataaatgactcagttta 148  Q
    |||||||||||||||| ||| |||||| | || |||| | | |||||||||||||||| |||||||||||||||||||| ||||||    
T  31237885 aatcaaaatcgatggattttaccaaaaaataa-taatacatgaatatatgttataaatggtatataatcataaatgacttagttta 31237969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 13502582 - 13502638
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaat 120  Q
    |||||||||||||||| ||| ||||||||||| ||||  ||||||||||||||||||    
T  13502582 aatcaaaatcgatggattttaccaaaacaaaaataatattaaatatatgttataaat 13502638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 27523928 - 27523984
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgat 57  Q
    ||||||||||||||||||||||||||||||| ||| ||  | |||||||||||||||    
T  27523928 tcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaatcgat 27523984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 92 - 148
Target Start/End: Complemental strand, 31578197 - 31578141
Alignment:
Q  92 aaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagttta 148  Q
    |||| |||| ||||||||||||||||||| ||||||| |||||||||||| ||||||    
T  31578197 aaaaataatactaaatatatgttataaatggtatatagtcataaatgacttagttta 31578141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 148
Target Start/End: Original strand, 15588763 - 15588842
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagttta 148  Q
    |||||||||||||||| ||| |||||| ||   |||| |||||||||||  |||||| |||||||||||||||||||| ||||||    
T  15588763 aatcaaaatcgatggattttaccaaaaaaa---taatactaaatatatg--ataaatggtatataatcataaatgacttagttta 15588842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 259
Target Start/End: Complemental strand, 34577855 - 34577808
Alignment:
Q  212 aaaatcctgcaattttgtatgaatttcacgattttgtgcgattttgat 259  Q
    |||||||||| |||||| ||||||| ||||||||||||||||||||||    
T  34577855 aaaatcctgcgattttgaatgaattccacgattttgtgcgattttgat 34577808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 13502505 - 13502571
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatc 67  Q
    ||||||||||| ||||||||| ||||||| | | | ||||| |||||||||||| ||||||||||||    
T  13502505 tcgtaaaatcgtaatcaaaattgaaggatattagtcaactatttttgtagaatctatataagaaatc 13502571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 29661166 - 29661100
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatc 67  Q
    |||||||| |||||| ||||||||||| ||| | | ||||| |||||||| ||||||||||||||||    
T  29661166 tcgtaaaaccgcaattaaaatcgaaggtttttattaaactacttttgtagtatcgatataagaaatc 29661100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 35565788 - 35565856
Alignment:
Q  3 gtaaaatcgcaatcaaaatcgaaggatttga---cttaactaattttgtagaatcgatataagaaatca 68  Q
    ||||||||||||  ||||||||||||||| |   || ||||| ||||||||||||||||||||||||||    
T  35565788 gtaaaatcgcaactaaaatcgaaggattttattactcaactacttttgtagaatcgatataagaaatca 35565856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 19257490 - 19257539
Alignment:
Q  209 tttaaaatcctgcaattttgtatgaatttcacgattttgtgcgattttga 258  Q
    ||||||||||||| |||||| ||| ||||||| |||||||||||||||||    
T  19257490 tttaaaatcctgcgattttgaatggatttcacaattttgtgcgattttga 19257539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 177
Target Start/End: Original strand, 27749713 - 27749785
Alignment:
Q  107 tatatgttataaattgtatataatcataaatgactc--agtttaaagtccacaaaatacttatacataaatga 177  Q
    |||||||||||||||| || || |||||||||||||  |||| |||||| ||||||||| || ||||||||||    
T  27749713 tatatgttataaattgcatgtagtcataaatgactcaaagttcaaagtctacaaaatacatacacataaatga 27749785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 36430145 - 36430088
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgata 58  Q
    ||||||||||||||||||||||||||||| | ||| ||  | ||||||||||||||||    
T  36430145 tcgtaaaatcgcaatcaaaatcgaaggatattactcaataatttttgtagaatcgata 36430088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 7302079 - 7302023
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgat 57  Q
    ||||||||| ||||||||||||||||||||| ||| ||  | |||||||||||||||    
T  7302079 tcgtaaaattgcaatcaaaatcgaaggattttactcaaggacttttgtagaatcgat 7302023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 20034054 - 20034110
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgat 57  Q
    ||||||||||||||||||||| ||||||||| ||| ||  | |||||||||||||||    
T  20034054 tcgtaaaatcgcaatcaaaattgaaggattttactcaaggacttttgtagaatcgat 20034110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 21869156 - 21869227
Alignment:
Q  4 taaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatcaaaatcga 75  Q
    |||||||||||| ||||||||||||||| | | ||  | |||||||||||||||||| || | |||||||||    
T  21869156 taaaatcgcaattaaaatcgaaggattttattcaatgacttttgtagaatcgatatatgatagcaaaatcga 21869227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 27407088 - 27407021
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatca 68  Q
    |||||| ||||||||||||||| ||| |||| ||| ||||| ||||| | |||| |||||||||||||    
T  27407088 tcgtaatatcgcaatcaaaatccaagaattttactcaactacttttggataatcaatataagaaatca 27407021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 31237808 - 31237867
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatata 60  Q
    |||||||||||||||||| |||||||||||| ||| ||  | ||||||| ||||||||||    
T  31237808 tcgtaaaatcgcaatcaatatcgaaggattttactcaaggacttttgtaaaatcgatata 31237867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 284
Target Start/End: Complemental strand, 8428421 - 8428234
Alignment:
Q  85 ccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagtttaaagtccacaaaatacttatacataaatgattnnnnn 184  Q
    ||||||||||| ||||||||| ||||| ||||||||| |||||| |||||||| |||| ||   |||||||||||||| |||||||||||||| |         
T  8428421 ccaaaacaaaaataatgctaactatatattataaattatatatagtcataaattactcggt---aagtccacaaaatatttatacataaatgactaaaaa 8428325  T
Q  185 nn-tggacaaaatccttaaaaaccgtttaaaatcctgcaattttgtatgaatttcacgattttgtgcgattttgatggacttttacaaggattttgccta 283  Q
       ||||| ||||| || ||||          |||| ||||||||||||||||||  ||||||||  |||||||||    |||||| | |||||||||||    
T  8428324 aagtggactaaatctttcaaaa----------tccttcaattttgtatgaatttcgggattttgtaggattttgatacgattttactaagattttgccta 8428235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 19519571 - 19519529
Alignment:
Q  87 aaaacaaaagtaatgctaaatatatgttataaattgtatataa 129  Q
    ||||| ||| |||||||||||||||||||||||||| ||||||    
T  19519571 aaaaccaaaataatgctaaatatatgttataaattgcatataa 19519529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 30433109 - 30433047
Alignment:
Q  4 taaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    |||||||||||||||||||||| ||||| ||| ||  | |||| ||||||||||||| |||||    
T  30433109 taaaatcgcaatcaaaatcgaatgattttactcaaggacttttatagaatcgatataggaaat 30433047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 148
Target Start/End: Complemental strand, 36430068 - 36429985
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagttta 148  Q
    |||||||||||||||| ||| || ||| ||||  ||| |||||||||||||| ||||  |||||| |||||||| ||| ||||||    
T  36430068 aatcaaaatcgatggattttacctaaaaaaaaa-aatactaaatatatgttagaaatgatatatagtcataaattacttagttta 36429985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 4e-47; HSPs: 40)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 24648306 - 24648124
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatc------aaaatcgatggactttgccaaaacaaa 94  Q
    ||||||||||| |||||||||| |||||||| ||| ||||| |||||||||||| |||||| |||||      ||||||| |||| ||| | |||||| |    
T  24648306 tcgtaaaatcgtaatcaaaatcaaaggattttactcaactacttttgtagaatcaatataaaaaatcgcaatcaaaatcggtggattttactaaaacata 24648207  T
Q  95 agtaatgctaaatatatgttataaattgtatataatcataaatgactcagtttaaagtccacaaaatacttatacataaatga 177  Q
    | ||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  24648206 aataatgctaaatatatattataaattgtatatagtcataaatgactcaatttaaagtccacaaaatacttatacataaatga 24648124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 247
Target Start/End: Original strand, 43005693 - 43005953
Alignment:
Q  3 gtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatc--------------aaaatcgatggactttgccaa 88  Q
    ||||||||||||||||||| ||| ||||| ||| ||||  |||||||||||||||||| ||||||              |||||||||||| | | ||||    
T  43005693 gtaaaatcgcaatcaaaattgaaagattttactcaacttcttttgtagaatcgatataggaaatcgtaaaatcgcaattaaaatcgatggattgtaccaa 43005792  T
Q  89 aacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagtttaaagtccac-aaaatacttatacataaatga-ttnnnnnnn 186  Q
    ||||||| |||||||||||||||||||||||||||||| | |||||||| |||||| ||||| | ||| |||||||||| | |||||||| |            
T  43005793 aacaaaaataatgctaaatatatgttataaattgtatacactcataaatcactcagattaaatttcacaaaaatacttaaatataaatgactaaaaaaaa 43005892  T
Q  187 tggacaaaatccttaaaaaccgtttaaaatcctgcaattttgtatgaatttcacgattttg 247  Q
    || ||||||||||| |||||| || |||||||||| ||||||||||||||||| |||||||    
T  43005893 tgaacaaaatccttcaaaacccttaaaaatcctgcgattttgtatgaatttcatgattttg 43005953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 161
Target Start/End: Complemental strand, 26021612 - 26021444
Alignment:
Q  5 aaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatc--aaaatc----------gatggactttgccaaaaca 92  Q
    |||||| |||||||||||| ||||||| ||| ||||| || ||||  ||||||||||||||||  ||||||          |||| | ||| ||||||||    
T  26021612 aaaatcacaatcaaaatcgtaggattttactcaactacttgtgtaacatcgatataagaaatcgtaaaatcacaattaaacgatgcattttaccaaaaca 26021513  T
Q  93 aaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagtttaaagtccacaaaat 161  Q
    | | |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||  |||||||    
T  26021512 ataataatgctaaatatatgttataaattgtatatagtcataaatgactcagattaaagtggacaaaat 26021444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 87 - 177
Target Start/End: Complemental strand, 19377798 - 19377706
Alignment:
Q  87 aaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgact--cagtttaaagtccacaaaatacttatacataaatga 177  Q
    ||||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||   |||| |||||||||||||||| |||||||||||||    
T  19377798 aaaacaaaaataatgttaaatatatgttataaattggatatagtcataaatgacttaaagttcaaagtccacaaaatacatatacataaatga 19377706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 64 - 177
Target Start/End: Complemental strand, 41427626 - 41427512
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgact--cagtttaaagtccacaaaat 161  Q
    |||||||||||| ||| | | ||||||||||| ||||| ||||||||| |||||||||| ||||| ||||||||||||   |||| ||||||||||||||    
T  41427626 aatcaaaatcga-ggattctaccaaaacaaaaataatgataaatatatattataaattgcatatagtcataaatgacttaaagttcaaagtccacaaaat 41427528  T
Q  162 acttatacataaatga 177  Q
    || |||||||||||||    
T  41427527 acatatacataaatga 41427512  T

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Target: chr5; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 85 - 175
Target Start/End: Complemental strand, 30804122 - 30804032
Alignment:
Q  85 ccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagtttaaagtccacaaaatacttatacataaat 175  Q
    ||||||||||| ||||||||||||| | |||| ||||  ||||| |||||||||||||||||| || || |||||||||||||||||||||    
T  30804122 ccaaaacaaaaataatgctaaatatttattatgaattacatatagtcataaatgactcagtttcaattctacaaaatacttatacataaat 30804032  T

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Target: chr5; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 64 - 177
Target Start/End: Complemental strand, 15446419 - 15446304
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactc--agtttaaagtccacaaaat 161  Q
    |||||||||||||||| | |  |||||||||| ||| | |||||||||||||| ||||| | | | |||||||||||||  ||||||||||||||||| |    
T  15446419 aatcaaaatcgatggattctatcaaaacaaaaataacgataaatatatgttatcaattgcacacactcataaatgactcaaagtttaaagtccacaaatt 15446320  T
Q  162 acttatacataaatga 177  Q
    |||| |||||||||||    
T  15446319 acttgtacataaatga 15446304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 64 - 148
Target Start/End: Complemental strand, 18843935 - 18843852
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagttta 148  Q
    |||||||||||||||| ||| || ||| |||| |||| ||||||||||||||||||| |||||||||||||||||||| ||||||    
T  18843935 aatcaaaatcgatggattttacccaaa-aaaattaatactaaatatatgttataaatggtatataatcataaatgacttagttta 18843852  T

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Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 177
Target Start/End: Original strand, 22984755 - 22984837
Alignment:
Q  97 taatgctaaatatatgttataaattgtatataatcataaatgactc--agtttaaagtccacaaaatacttatacataaatga 177  Q
    |||||||||||||||||||||||||| ||||| ||||| |||||||  |||| ||| |||||||||||| |||||||||||||    
T  22984755 taatgctaaatatatgttataaattgcatatagtcatagatgactcaaagttcaaattccacaaaatacatatacataaatga 22984837  T

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Target: chr5; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 130 - 177
Target Start/End: Original strand, 13349509 - 13349556
Alignment:
Q  130 tcataaatgactcagtttaaagtccacaaaatacttatacataaatga 177  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||    
T  13349509 tcataaatgactcagtttgaagtccacaaaatacttatacataaatga 13349556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 30799578 - 30799499
Alignment:
Q  98 aatgctaaatatatgttataaattgtatataatcataaatgactcagtttaaagtccacaaaatacttatacataaatga 177  Q
    |||||||||||| ||||||||||| | |||  |||||||||||| ||||| |||| || |||||||||||||||||||||    
T  30799578 aatgctaaatatttgttataaattatgtatggtcataaatgacttagtttcaagttcataaaatacttatacataaatga 30799499  T

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Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 122
Target Start/End: Original strand, 9996892 - 9996950
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattg 122  Q
    |||||||||||||||| ||| ||||||||||| ||||||| ||||||||||||||||||    
T  9996892 aatcaaaatcgatggattttaccaaaacaaaaataatgcttaatatatgttataaattg 9996950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 85 - 177
Target Start/End: Original strand, 187814 - 187907
Alignment:
Q  85 ccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgact-cagtttaaagtccacaaaatacttatacataaatga 177  Q
    ||||||||||| ||||| |||||||||||||||||||| ||||| | |||||| |||  ||||  ||||||||||||||  |||||||||||||    
T  187814 ccaaaacaaaaataatgttaaatatatgttataaattgcatatagtaataaataactaaagttcgaagtccacaaaatatatatacataaatga 187907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 148
Target Start/End: Complemental strand, 19579163 - 19579079
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagttta 148  Q
    |||||||||||||||| ||| |||||| |||| |||| | ||||||||||||| ||| ||| ||| |||||||||||| ||||||    
T  19579163 aatcaaaatcgatggattttaccaaaaaaaaaataataccaaatatatgttatgaatggtaaatagtcataaatgacttagttta 19579079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 187 - 245
Target Start/End: Complemental strand, 26021453 - 26021395
Alignment:
Q  187 tggacaaaatccttaaaaaccgtttaaaatcctgcaattttgtatgaatttcacgattt 245  Q
    |||||||||||||| |||||| ||||||||||||| |||||||||| || |||||||||    
T  26021453 tggacaaaatccttcaaaaccctttaaaatcctgcgattttgtatggatgtcacgattt 26021395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 43235162 - 43235100
Alignment:
Q  4 taaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    |||||||||||||||||||||||||||| ||| ||  | ||||||||||||||||||| ||||    
T  43235162 taaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtagaatcgatataaaaaat 43235100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 38158101 - 38158161
Alignment:
Q  6 aaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    ||||||||| |||||||||||||||| ||| ||||| |||||||||||| || ||||||||    
T  38158101 aaatcgcaaccaaaatcgaaggattttactcaactatttttgtagaatctatgtaagaaat 38158161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 41688501 - 41688557
Alignment:
Q  4 taaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatata 60  Q
    ||||||||||| |||||||||||||||| ||||||  | ||||||||||||||||||    
T  41688501 taaaatcgcaaccaaaatcgaaggattttacttaaggacttttgtagaatcgatata 41688557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 41427716 - 41427657
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatata 60  Q
    ||||||||||||||||||||||||||||||| |||  |  | ||||||||||||||||||    
T  41427716 tcgtaaaatcgcaatcaaaatcgaaggattttactcgaggacttttgtagaatcgatata 41427657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 21058988 - 21059054
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaagga-tttgacttaactaattttgtagaatcgatataagaaat 66  Q
    |||||||||||||| |||||||||| || ||| ||||||||| |||||||||||  |||||||||||    
T  21058988 tcgtaaaatcgcaaccaaaatcgaaagatttttacttaactacttttgtagaatttatataagaaat 21059054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 22984643 - 22984705
Alignment:
Q  11 gcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatcaaaatc 73  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||||||||| || | |||||||    
T  22984643 gcaatcaaaatcgaaggattttactcaaggaattttgtagaatcgatataggatagcaaaatc 22984705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 259
Target Start/End: Complemental strand, 4289987 - 4289918
Alignment:
Q  190 acaaaatccttaaaaaccgtttaaaatcctgcaattttgtatgaatttcacgattttgtgcgattttgat 259  Q
    ||||||||||| |||| |  | |||||||||| |||||| | | ||||||||||||||||||||||||||    
T  4289987 acaaaatccttcaaaatccatcaaaatcctgcgattttgaacggatttcacgattttgtgcgattttgat 4289918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 133
Target Start/End: Original strand, 15052013 - 15052081
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcat 133  Q
    |||||||||||| ||| | | ||||||||||| ||||| |||||||||||||||||||| ||||| ||||    
T  15052013 aatcaaaatcga-ggattctaccaaaacaaaaataatgttaaatatatgttataaattgcatatagtcat 15052081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 19042260 - 19042325
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    |||||||||| |||| |||||||||| |||| ||||||  | |||||||||||||||||| |||||    
T  19042260 tcgtaaaatcacaattaaaatcgaagaattttacttaaggacttttgtagaatcgatataggaaat 19042325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 19979781 - 19979736
Alignment:
Q  103 taaatatatgttataaattgtatataatcataaatgactcagttta 148  Q
    |||||||||||||||||| ||||||| |||||||||||| ||||||    
T  19979781 taaatatatgttataaatggtatatagtcataaatgacttagttta 19979736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 27340019 - 27340084
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    |||| |||||||||||||||||||||||||| ||| |   | ||||||||||| ||||||||||||    
T  27340019 tcgtgaaatcgcaatcaaaatcgaaggattttactcacggacttttgtagaattgatataagaaat 27340084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 15051929 - 15051981
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaat 53  Q
    ||||||||||||||||||||||||||||||| ||| ||  | |||||||||||    
T  15051929 tcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaat 15051981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 19579237 - 19579181
Alignment:
Q  4 taaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatata 60  Q
    |||||||||||||||||||||||||||| ||| ||  | ||||||||||||| ||||    
T  19579237 taaaatcgcaatcaaaatcgaaggatttcactcaaggacttttgtagaatcgttata 19579181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 148
Target Start/End: Complemental strand, 20321163 - 20321079
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagttta 148  Q
    |||||||||||||||| ||| || | | |||| ||||  ||||||||||||||||||  |||||  |||||||||||| ||||||    
T  20321163 aatcaaaatcgatggattttacccagaaaaaattaatattaaatatatgttataaatgatatatggtcataaatgacttagttta 20321079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 148
Target Start/End: Original strand, 23172337 - 23172420
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagttta 148  Q
    |||||||||||||| | ||| || ||| |||| ||||  ||||||||||||| |||| ||||||| |||||||||||| ||||||    
T  23172337 aatcaaaatcgatgaattttacccaaa-aaaattaatattaaatatatgttacaaatggtatatagtcataaatgacttagttta 23172420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 260
Target Start/End: Complemental strand, 15445907 - 15445860
Alignment:
Q  213 aaatcctgcaattttgtatgaatttcacgattttgtgcgattttgatg 260  Q
    |||||||| ||||||  |||||||||| ||||||||||||||||||||    
T  15445907 aaatcctgaaattttacatgaatttcatgattttgtgcgattttgatg 15445860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 15446506 - 15446435
Alignment:
Q  4 taaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatcaaaatcga 75  Q
    ||||||| ||||| ||| |||||||||| | |  |||| ||||||||||||||||||||| | |||||||||    
T  15446506 taaaatcacaatcgaaaccgaaggattttagtcgactacttttgtagaatcgatataagatagcaaaatcga 15446435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 19377889 - 19377838
Alignment:
Q  12 caatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataaga 63  Q
    |||||||||||||||||||| ||| ||  | |||||||||||||||||||||    
T  19377889 caatcaaaatcgaaggattttactcaaggacttttgtagaatcgatataaga 19377838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 177
Target Start/End: Complemental strand, 29270303 - 29270237
Alignment:
Q  110 atgttataaattgtatataatcataaatgactcagtttaaagtccacaaaatacttatacataaatga 177  Q
    ||||| ||||||| ||||| |||||||| |||||   ||||||| |||||||||||||||||||||||    
T  29270303 atgttttaaattgcatatagtcataaattactcaaagtaaagtc-acaaaatacttatacataaatga 29270237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 20321237 - 20321175
Alignment:
Q  4 taaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    |||||||||||||||||| ||||||||| ||| ||  | |||||||||||| ||||| |||||    
T  20321237 taaaatcgcaatcaaaattgaaggattttactgaaggacttttgtagaatctatataggaaat 20321175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 141
Target Start/End: Original strand, 21059066 - 21059141
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgact 141  Q
    |||||||||||||||| ||| | | || ||||  ||| ||||||||||||||||||| || |||| ||||||||||||    
T  21059066 aatcaaaatcgatggattttacaacaaaaaaa--aatactaaatatatgttataaatggtttatagtcataaatgact 21059141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 259
Target Start/End: Complemental strand, 29269824 - 29269774
Alignment:
Q  209 tttaaaatcctgcaattttgtatgaatttcacgattttgtgcgattttgat 259  Q
    ||||||||||| |||||||| ||||||||||| ||||| || |||||||||    
T  29269824 tttaaaatcctacaattttgcatgaatttcacaattttttgtgattttgat 29269774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 148
Target Start/End: Original strand, 41688575 - 41688657
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagttta 148  Q
    |||||||||||||| | ||| |||||| |||  |||| ||||||||||||||| ||| ||||||| | |||||||| | ||||||    
T  41688575 aatcaaaatcgatgaattttaccaaaaaaaa--taatactaaatatatgttatgaatggtatatagttataaatgatttagttta 41688657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 13341530 - 13341601
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatcaaaatc 73  Q
    |||||||||||||| | |||| ||||||||| |||  |||| |||||||||||||||||| || | |||||||    
T  13341530 tcgtaaaatcgcaaacgaaattgaaggattt-actcgactacttttgtagaatcgatataggatagcaaaatc 13341601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 23172265 - 23172325
Alignment:
Q  6 aaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    |||||| |||||||||||||| |||| ||| ||  | |||||||||||||||||| |||||    
T  23172265 aaatcgtaatcaaaatcgaagaattttactcaaagacttttgtagaatcgatataggaaat 23172325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 49)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 4 - 256
Target Start/End: Complemental strand, 27676730 - 27676465
Alignment:
Q  4 taaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatc--------------aaaatcgatggactttgccaaa 89  Q
    |||||||||||||||||||||| ||||| ||| ||||| ||||||| |||||||||||||||||              |||||| ||||| ||| |||||    
T  27676730 taaaatcgcaatcaaaatcgaaagattttactcaactacttttgtaaaatcgatataagaaatcgtaaaatcacaatcaaaatcaatggattttaccaaa 27676631  T
Q  90 acaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagtttaaagtccacaaaatacttatacataaatgattnnnnnnntgg 189  Q
    ||||||  |||| ||||||||||||||||||| |||||| ||||||||||||| ||||||| |||||||||||||||||||||||||| |       |||    
T  27676630 acaaaaacaatgttaaatatatgttataaattatatatagtcataaatgactcggtttaaa-tccacaaaatacttatacataaatgact-aaaaaatgg 27676533  T
Q  190 acaaaatccttaaaa-accgtttaaaatcctgcaattttgtatgaatttcacgattttgtgcgatttt 256  Q
    |||||||||||||||  || ||| || ||||| | ||||||||| ||||||||||| ||||| |||||    
T  27676532 acaaaatccttaaaaccccttttcaattcctgaatttttgtatggatttcacgattctgtgctatttt 27676465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 17796862 - 17796605
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgata--------taa----gaaatcaaaatcgatggactttgccaa 88  Q
    ||||||||| ||||| |||||||||| |||| ||| ||||| ||||||||||||||||        |||    ||||||||||| ||||||  |  ||||    
T  17796862 tcgtaaaattgcaattaaaatcgaagcattttactcaactacttttgtagaatcgataagaaatcgtaaaatcgaaatcaaaattgatggatgt--ccaa 17796765  T
Q  89 aacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagtttaaagtccacaaaatacttatacataaatgattnnnnnnn-t 187  Q
    || |||| || ||| |||||  |||||||||||||||||| | ||||||||||  ||||||||| ||||||| ||||||| |||||||| |        |    
T  17796764 aataaaaatagtgcaaaataactgttataaattgtatatattaataaatgacttggtttaaagttcacaaaacacttataaataaatgactaaaaaaaat 17796665  T
Q  188 ggacaaaatccttaaaaaccgtttaaaatcctgcaattttgtatgaatttcacgattttg 247  Q
     ||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  17796664 agacaaaatcattaaaaaccctttaaaatcctgcaattttgtatggatttcacgattttg 17796605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 19105302 - 19105045
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgata--------taa----gaaatcaaaatcgatggactttgccaa 88  Q
    ||||||||| ||||| |||||||||| |||| ||| ||||| ||||||||||||||||        |||    ||||||||||| ||||||  |  ||||    
T  19105302 tcgtaaaattgcaattaaaatcgaagcattttactcaactacttttgtagaatcgataagaaatcgtaaaatcgaaatcaaaattgatggatgt--ccaa 19105205  T
Q  89 aacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagtttaaagtccacaaaatacttatacataaatgattnnnnnnn-t 187  Q
    || |||| || ||| |||||  |||||||||||||||||| | ||||||||||  ||||||||| ||||||| ||||||| |||||||| |        |    
T  19105204 aataaaaatagtgcaaaataactgttataaattgtatatattaataaatgacttggtttaaagttcacaaaacacttataaataaatgactaaaaaaaat 19105105  T
Q  188 ggacaaaatccttaaaaaccgtttaaaatcctgcaattttgtatgaatttcacgattttg 247  Q
     ||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  19105104 agacaaaatcattaaaaaccctttaaaatcctgcaattttgtatggatttcacgattttg 19105045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 107 - 256
Target Start/End: Original strand, 10872816 - 10872966
Alignment:
Q  107 tatatgttataaattgtatataatcataaatgactcagtttaaagtccacaaaatacttatacataaatga-ttnnnnnnntggacaaaatccttaaaaa 205  Q
    ||||||||||||||||||| |  |||||||||||  |||||||||||||||||||||||| |||||||||| |        |||||||||||||| ||||    
T  10872816 tatatgttataaattgtattttgtcataaatgacatagtttaaagtccacaaaatacttaaacataaatgactaaaaaaaatggacaaaatccttcaaaa 10872915  T
Q  206 ccgtttaaaatcctgcaattttgtatgaatttcacgattttgtgcgatttt 256  Q
    || ||||||||| ||  |||||||||| |||| | ||||||||||||||||    
T  10872916 ccttttaaaatcttgtgattttgtatggattttaagattttgtgcgatttt 10872966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 64 - 177
Target Start/End: Original strand, 6861048 - 6861163
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactc--agtttaaagtccacaaaat 161  Q
    |||||||||||||||| | | ||||||||||| ||| ||||| ||||||||||||||||| |||| |||||||||| ||  |||||||||| |||||||     
T  6861048 aatcaaaatcgatggattctaccaaaacaaaaataaagctaactatatgttataaattgtctatagtcataaatgattcgaagtttaaagtgcacaaaac 6861147  T
Q  162 acttatacataaatga 177  Q
    | ||||||||| ||||    
T  6861148 atttatacatatatga 6861163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 17064604 - 17064539
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    ||||||||||||||||||||||||||||||| ||| ||||| |||||||||||| |||||||||||    
T  17064604 tcgtaaaatcgcaatcaaaatcgaaggattttactcaactacttttgtagaatcaatataagaaat 17064539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 19348760 - 19348648
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgact-cagtttaaagtccacaaaata 162  Q
    |||||||||||| ||| | | ||||||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||  | || |||||||||| ||||    
T  19348760 aatcaaaatcga-ggattataccaaaacaaaaataatgttaaatatatgttataaattgcatatagtcataaatgactataattcaaagtccacataata 19348662  T
Q  163 cttatacataaatg 176  Q
    | ||||||||||||    
T  19348661 catatacataaatg 19348648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 86 - 175
Target Start/End: Complemental strand, 18014177 - 18014089
Alignment:
Q  86 caaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgact-cagtttaaagtccacaaaatacttatacataaat 175  Q
    |||||||||| ||||||||||||||||||||||||||   ||| ||||||||||||  |||| |||||||||||||||| |||||||||||    
T  18014177 caaaacaaaaataatgctaaatatatgttataaattg--catagtcataaatgactaaagttcaaagtccacaaaatacatatacataaat 18014089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 13286241 - 13286175
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatc 67  Q
    |||||||||||||||||||||| || ||||| ||| ||||| |||||||||||||||||||||||||    
T  13286241 tcgtaaaatcgcaatcaaaatcaaaagattttactcaactacttttgtagaatcgatataagaaatc 13286175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 22971016 - 22970903
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcat-aaatgact-cagtttaaagtccacaaaat 161  Q
    |||||||||||| ||| | | ||||||||||| ||||| || ||||||||||||||||| ||||| |||| ||||||||  |||| ||||||||||||||    
T  22971016 aatcaaaatcga-ggattctaccaaaacaaaaataatgttatatatatgttataaattgcatatagtcataaaatgactaaagttcaaagtccacaaaat 22970918  T
Q  162 acttatacataaatg 176  Q
    || ||||||||||||    
T  22970917 acatatacataaatg 22970903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 25870154 - 25870219
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    |||||||||||||| ||||||| |||||||| ||| |||||| |||||||||||||||||||||||    
T  25870154 tcgtaaaatcgcaaccaaaatcaaaggattttactcaactaagtttgtagaatcgatataagaaat 25870219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 64 - 148
Target Start/End: Complemental strand, 39428123 - 39428039
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagttta 148  Q
    |||||||||||||||| ||| || ||| |||| |||| ||||||||||||||||| | ||||||| |||||||||||| ||||||    
T  39428123 aatcaaaatcgatggattttacccaaaaaaaattaatactaaatatatgttataagtagtatatagtcataaatgacttagttta 39428039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 148
Target Start/End: Complemental strand, 42697143 - 42696984
Alignment:
Q  3 gtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaa--------------atcaaaatcgatggactttgccaa 88  Q
    ||||||||||||  ||||| ||||||||| | | ||||| ||||||||||||||||||||||              ||||||||||||||| ||| ||||    
T  42697143 gtaaaatcgcaactaaaattgaaggattttattcaactacttttgtagaatcgatataagaaatcataaactcgcaatcaaaatcgatggattttaccaa 42697044  T
Q  89 aacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagttta 148  Q
    || ||||  ||| | ||||||||||||||||| ||||||| |||||||||||| ||||||    
T  42697043 aaaaaaaaaaataccaaatatatgttataaatggtatatagtcataaatgacttagttta 42696984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 163
Target Start/End: Complemental strand, 9169880 - 9169782
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagtttaaagtccacaaaatac 163  Q
    |||||||||||| ||| | | ||||||||||| ||||| |||||||||||||||||||| ||||| ||||||||||   |||| ||||| ||||||||||    
T  9169880 aatcaaaatcga-ggattctaccaaaacaaaaataatgttaaatatatgttataaattgcatatagtcataaatgataaagttcaaagttcacaaaatac 9169782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 10872550 - 10872613
Alignment:
Q  4 taaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatc 67  Q
    |||||||||||||||||| ||||||||| ||| ||||| ||||| |||||||||||||||||||    
T  10872550 taaaatcgcaatcaaaattgaaggattttactaaactacttttgaagaatcgatataagaaatc 10872613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 6136401 - 6136467
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatc 67  Q
    |||||||||||||||||||||| || ||||| ||| ||||| |||| ||||||||||||||||||||    
T  6136401 tcgtaaaatcgcaatcaaaatcaaaagattttactcaactacttttatagaatcgatataagaaatc 6136467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 28746073 - 28745913
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat--------------caaaatcgatggactttgcc 86  Q
    |||||||||||||||||||||||||| |||| ||| ||  | |||||||||||||||||| |||||              ||||||||||||| ||| ||    
T  28746073 tcgtaaaatcgcaatcaaaatcgaagaattttactcaagaacttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaatcgatggattttacc 28745974  T
Q  87 aaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagttta 148  Q
     ||| |||| ||||  |||||||||||||||||| ||||||| |||||||||||| ||||||    
T  28745973 caaa-aaaattaatagtaaatatatgttataaatagtatatagtcataaatgacttagttta 28745913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 8592231 - 8592304
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatcaaaatcg 74  Q
    ||||||||||||||||||||||||||||||| ||| ||  | |||||||||||||||||| || | ||||||||    
T  8592231 tcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatataggatagcaaaatcg 8592304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 85 - 163
Target Start/End: Original strand, 8592341 - 8592421
Alignment:
Q  85 ccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgact--cagtttaaagtccacaaaatac 163  Q
    ||||||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||   ||||  |||||||||||||||    
T  8592341 ccaaaacaaaaataatgataaatatatgttataaattgcatatagtcataaatgacttaaagttcgaagtccacaaaatac 8592421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 130 - 256
Target Start/End: Original strand, 15806409 - 15806526
Alignment:
Q  130 tcataaatgactcagtttaaagtccacaaaatacttatacataaatgattnnnnnnntggacaaaatccttaaaaaccgtttaaaatcctgcaattttgt 229  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||        ||| |||||    ||||   ||| |||||||||| |||||||    
T  15806409 tcataaatgactcggtttaaagtccacgaaatacttatacataaatgatt--------ggaaaaaatggacaaaatt-gttcaaaatcctgcgattttgt 15806499  T
Q  230 atgaatttcacgattttgtgcgatttt 256  Q
    ||| |||||||||||||||||||||||    
T  15806500 atggatttcacgattttgtgcgatttt 15806526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 28136059 - 28135994
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    |||||||||||| |||||||||||||||||| ||| ||||| ||||||| ||| ||||||||||||    
T  28136059 tcgtaaaatcgctatcaaaatcgaaggattttactcaactacttttgtaaaattgatataagaaat 28135994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 3449142 - 3449206
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaa 65  Q
    |||||||||||||| |||||||||| ||||| | | ||||| |||||||||||||||||||||||    
T  3449142 tcgtaaaatcgcaaccaaaatcgaatgattttattcaactacttttgtagaatcgatataagaaa 3449206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 139
Target Start/End: Complemental strand, 27055306 - 27055255
Alignment:
Q  88 aaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatga 139  Q
    |||||||| |||||||||||||||||| ||||||| ||||||||||||||||    
T  27055306 aaacaaaaataatgctaaatatatgttgtaaattgcatataatcataaatga 27055255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 24620031 - 24620088
Alignment:
Q  3 gtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatata 60  Q
    ||||||||||||||||||||||||||||| ||| ||  | ||||||||||||||||||    
T  24620031 gtaaaatcgcaatcaaaatcgaaggattttactcaaagacttttgtagaatcgatata 24620088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 110 - 177
Target Start/End: Original strand, 8566180 - 8566248
Alignment:
Q  110 atgttataaattgtatataatcataaatgactca-gtttaaagtccacaaaatacttatacataaatga 177  Q
    ||||||||||||| ||||| |||||||||||| | |||  ||||||||||||||| |||||||||||||    
T  8566180 atgttataaattgcatatagtcataaatgactaaagttcgaagtccacaaaatacatatacataaatga 8566248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 9152817 - 9152873
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgat 57  Q
    ||||||||||| || |||||||||| ||||||||| ||||| |||||||||||||||    
T  9152817 tcgtaaaatcgtaaccaaaatcgaaagatttgactcaactatttttgtagaatcgat 9152873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 10591832 - 10591788
Alignment:
Q  85 ccaaaacaaaagtaatgctaaatatatgttataaattgtatataa 129  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||    
T  10591832 ccaaaacaaaaataatgctaaatatatgttataaattgcatataa 10591788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 92 - 148
Target Start/End: Original strand, 15515192 - 15515248
Alignment:
Q  92 aaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagttta 148  Q
    |||| |||| ||||||||||||||||||| ||||||| |||||||||||| ||||||    
T  15515192 aaaaataatactaaatatatgttataaatggtatatagtcataaatgacttagttta 15515248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 15806292 - 15806352
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgta 124  Q
    ||||| ||| |||||| | | ||||||||||| ||||||||||||||||||||||||||||    
T  15806292 aatcagaattgatggattctaccaaaacaaaaataatgctaaatatatgttataaattgta 15806352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 22137572 - 22137508
Alignment:
Q  3 gtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatc 67  Q
    |||||||| ||| ||||||| ||| |||| ||| ||||| |||||||||||||||||||||||||    
T  22137572 gtaaaatcacaaccaaaatcaaagaattttactcaactacttttgtagaatcgatataagaaatc 22137508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 145 - 234
Target Start/End: Original strand, 24649597 - 24649686
Alignment:
Q  145 tttaaagtccacaaaatacttatacataaatgattnnnnnnntggacaaaatccttaaaaaccgtttaaaatcctgcaattttgtatgaa 234  Q
    |||||||| |||||||||||||||||||||||| |       |||| ||||| ||| |||||| ||||||||||||| || |||||||||    
T  24649597 tttaaagttcacaaaatacttatacataaatgactaaaaaaatggataaaattcttcaaaaccctttaaaatcctgcgatattgtatgaa 24649686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 259
Target Start/End: Complemental strand, 3041244 - 3041197
Alignment:
Q  212 aaaatcctgcaattttgtatgaatttcacgattttgtgcgattttgat 259  Q
    |||||||||| |||||| ||| ||||||||||||||||||||||||||    
T  3041244 aaaatcctgcgattttgaatggatttcacgattttgtgcgattttgat 3041197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 143
Target Start/End: Complemental strand, 23649447 - 23649368
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactca 143  Q
    ||||||||||||||   ||  ||||| ||||| ||||| |||||||||||||||||||| ||| || |||||||||||||    
T  23649447 aatcaaaatcgatgagtttcaccaaagcaaaaataatgttaaatatatgttataaattgcataaaaacataaatgactca 23649368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 148
Target Start/End: Original strand, 24620146 - 24620192
Alignment:
Q  102 ctaaatatatgttataaattgtatataatcataaatgactcagttta 148  Q
    |||||||||| |||||||| |||||||||||||||||||| ||||||    
T  24620146 ctaaatatattttataaatggtatataatcataaatgacttagttta 24620192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 6136478 - 6136540
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatata 128  Q
    |||||||||||||||| ||| ||||||||||| |||| |||| |||||||  |||||||||||||    
T  6136478 aatcaaaatcgatggattttaccaaaacaaaaataatactaactatatgt--taaattgtatata 6136540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 20756319 - 20756254
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    ||||||||||||||||||||| ||| ||||| ||| ||  | |||||||||||||||||| |||||    
T  20756319 tcgtaaaatcgcaatcaaaattgaaagattttactcaaggatttttgtagaatcgatataggaaat 20756254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 25870231 - 25870295
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataa 129  Q
    |||||||||||||||| ||| |||||| | || |||| ||||||||||||||||||| ||||||||    
T  25870231 aatcaaaatcgatggattttaccaaaaaacaa-taatactaaatatatgttataaatggtatataa 25870295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 27090739 - 27090666
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatcaaaatcg 74  Q
    |||||| |||||||| ||||||||||||||| ||| ||  ||||||||| |||||||||| || | ||||||||    
T  27090739 tcgtaagatcgcaataaaaatcgaaggattttactcaaggaattttgtataatcgatataggatagcaaaatcg 27090666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 3041520 - 3041464
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgat 57  Q
    ||||||||||||||||||||||||||||||| ||| ||  | |||||||||| ||||    
T  3041520 tcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaaacgat 3041464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 22971106 - 22971054
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaat 53  Q
    ||||||||||||||||||||||||||||||| ||| ||  | |||||||||||    
T  22971106 tcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaat 22971054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 41671474 - 41671426
Alignment:
Q  3 gtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtaga 51  Q
    |||||||||||| |||||||||||||||| ||| ||||| |||||||||    
T  41671474 gtaaaatcgcaaccaaaatcgaaggattttactcaactacttttgtaga 41671426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 259
Target Start/End: Original strand, 20767443 - 20767490
Alignment:
Q  212 aaaatcctgcaattttgtatgaatttcacgattttgtgcgattttgat 259  Q
    ||||||||||||||||| | |||||||||| |||||||| ||||||||    
T  20767443 aaaatcctgcaattttgaacgaatttcacggttttgtgcaattttgat 20767490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 259
Target Start/End: Complemental strand, 22970772 - 22970725
Alignment:
Q  212 aaaatcctgcaattttgtatgaatttcacgattttgtgcgattttgat 259  Q
    |||||||||| |||||| ||| |||||| |||||||||||||||||||    
T  22970772 aaaatcctgcgattttgaatggatttcatgattttgtgcgattttgat 22970725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 259
Target Start/End: Complemental strand, 26234983 - 26234936
Alignment:
Q  212 aaaatcctgcaattttgtatgaatttcacgattttgtgcgattttgat 259  Q
    |||||||||| |||||| |||||||| || ||||||||||||||||||    
T  26234983 aaaatcctgcgattttgcatgaattttacaattttgtgcgattttgat 26234936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 18014288 - 18014258
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggattt 31  Q
    |||||||||||||||||||||||||||||||    
T  18014288 tcgtaaaatcgcaatcaaaatcgaaggattt 18014258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 135
Target Start/End: Original strand, 21553814 - 21553888
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatg----ctaaatatatgttataaattgtatataatcataa 135  Q
    |||||||||||| ||| | | ||||||||||| |||||    ||||||||||||||||||||| ||||||||||||    
T  21553814 aatcaaaatcga-ggattctaccaaaacaaaaataatgttgactaaatatatgttataaattgcatataatcataa 21553888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 148
Target Start/End: Original strand, 22494734 - 22494780
Alignment:
Q  102 ctaaatatatgttataaattgtatataatcataaatgactcagttta 148  Q
    ||||||||||||||||||| ||||||| |||||| ||||| ||||||    
T  22494734 ctaaatatatgttataaatggtatatagtcataactgacttagttta 22494780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 8155964 - 8156025
Alignment:
Q  4 taaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaa 65  Q
    |||||||||||  || |||||||||||| ||| ||||| |||||||| || |||||||||||    
T  8155964 taaaatcgcaactaagatcgaaggattttactcaactacttttgtagcattgatataagaaa 8156025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 256
Target Start/End: Original strand, 24263376 - 24263421
Alignment:
Q  212 aaaatcctgcaattttgtatgaatttcacga-ttttgtgcgatttt 256  Q
    |||||||| |||||||||||| ||||||||| ||||||||||||||    
T  24263376 aaaatcctacaattttgtatggatttcacgatttttgtgcgatttt 24263421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 9e-39; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 17055751 - 17055997
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat--------------caaaatcgatggactttgcc 86  Q
    ||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||| |||||||              |||||| |||||| ||| ||    
T  17055751 tcgtaaaatcgcaatcaaaatcgaaggattttactcaactacttttgtagaatcgatacaagaaattgtaaaattgcaatcaaaatggatggattttacc 17055850  T
Q  87 aaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagtttaaagtccacaaaatacttatacataaatga-ttnnnnnn 185  Q
    ||||||||| |||||||||||||  | |||||||| |||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| |           
T  17055851 aaaacaaaaataatgctaaatat--gctataaattatatatagtcatatatgactcaatttaaagtccacaaaatacttatacataaatgactaacaaaa 17055948  T
Q  186 ntggacaaaatccttaaaaaccgtttaaaatcctgcaattttgtatgaa 234  Q
     | |||||||| ||| |||||| ||||||||| ||| ||||||||||||    
T  17055949 atcgacaaaattcttcaaaaccctttaaaatcttgcgattttgtatgaa 17055997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 64 - 256
Target Start/End: Original strand, 18891503 - 18891697
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagtttaaagtccacaaaatac 163  Q
    ||||||||| |||| | ||| ||||||| ||| ||||| ||||||||| ||||||||| || ||| |||||||||| |||||||||| ||||||||||||    
T  18891503 aatcaaaattgatgaattttaccaaaacgaaaataatgttaaatatatattataaattatagatagtcataaatgattcagtttaaattccacaaaatac 18891602  T
Q  164 ttatacataaat-gattnnnnnnntggacaaaatccttaaaaaccgtttaaaatcctgcaattttgtatgaatttcacgattttg-tgcgatttt 256  Q
    |||||||||||| | |        ||||||| |  ||| |||||| ||||||||| |||||||| |||||||||||||||||||| |||||||||    
T  18891603 ttatacataaatggctaaaaaaaatggacaatagacttcaaaaccctttaaaatcgtgcaatttcgtatgaatttcacgattttgatgcgatttt 18891697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 64 - 247
Target Start/End: Original strand, 27917281 - 27917462
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagtttaaagtccacaaaatac 163  Q
    |||||||||||||| | ||| |  ||||| || |||||| |||||||| |||||||| ||||||| |||||||| |||||||||||||| ||||||||||    
T  27917281 aatcaaaatcgatgaattttac--aaacataaataatgcaaaatatatattataaatcgtatatagtcataaataactcagtttaaagt-cacaaaatac 27917377  T
Q  164 ttatacataaatga-ttnnnnnnntggacaaaatccttaaaaaccgtttaaaatcctgcaattttgtatgaatttcacgattttg 247  Q
    |||||||||||||| |        || | || |||||  |||||| ||||||||||| |||||||||||||||||||| ||||||    
T  27917378 ttatacataaatgactaaacaaaatgtaaaacatcctccaaaaccctttaaaatcctccaattttgtatgaatttcacaattttg 27917462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 12002801 - 12002890
Alignment:
Q  85 ccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgact--cagtttaaagtccacaaaatacttatacata 172  Q
    ||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||   | || |||||||||||||||| ||||||||    
T  12002801 ccaaaacaaaaataatgctaaatatatgttataaattgcatatagtcataaatgacttaaaattcaaagtccacaaaatacatatacata 12002890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 47786155 - 47785996
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatc--------------aaaatcgatggactttgcc 86  Q
    |||||||||| ||| |||||||||||||||| ||| ||||| ||||||||||| |||||||||||||              |||||||||||| ||| ||    
T  47786155 tcgtaaaatcacaaccaaaatcgaaggattttactcaactacttttgtagaattgatataagaaatcacaaaatcgaaataaaaatcgatggattttacc 47786056  T
Q  87 aaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagttta 148  Q
    | |  |||| |||| ||||||||||||||||||| ||||||| |||||||||||| ||||||    
T  47786055 aca--aaaaataatactaaatatatgttataaatggtatatagtcataaatgacttagttta 47785996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 16125287 - 16125447
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataaga--------------aatcaaaatcgatggactttgcc 86  Q
    ||||||||||||||||||||||||||||||| ||| ||  |  ||||||||||||||||||||              ||||||||||||||||| || ||    
T  16125287 tcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacatttgtagaatcgatataagaaattgtaaaatcgcaatcaaaatcgatggacgttacc 16125386  T
Q  87 aaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagttta 148  Q
     ||| || | |||| ||||||||||||||||||| ||||||| |||||||||||| ||||||    
T  16125387 caaa-aataataatactaaatatatgttataaatggtatatattcataaatgacttagttta 16125447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 17197450 - 17197562
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgact-cagtttaaagtccacaaaata 162  Q
    |||||||||||| ||| | | ||||||||||| ||||| ||||||||||||| |||||| ||||| ||||||||||||  |||| |||||||  ||||||    
T  17197450 aatcaaaatcga-ggattctaccaaaacaaaaataatgttaaatatatgttacaaattgcatatagtcataaatgactaaagttcaaagtccgtaaaata 17197548  T
Q  163 cttatacataaatg 176  Q
    | ||||||||||||    
T  17197549 catatacataaatg 17197562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 84 - 177
Target Start/End: Complemental strand, 24117695 - 24117602
Alignment:
Q  84 gccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcag--tttaaagtccacaaaatacttatacataaatga 177  Q
    |||||||||||| |||||||||||||  ||| ||||||| ||||| ||||||||||||||   |||||||| |||||||||| |||||||||||||    
T  24117695 gccaaaacaaaaataatgctaaatat--gttttaaattgcatatagtcataaatgactcaaaatttaaagttcacaaaatacatatacataaatga 24117602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 64 - 148
Target Start/End: Original strand, 42179973 - 42180057
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagttta 148  Q
    |||||||||||||||| ||| |||||| |||  |||| ||| ||||||||||||||| ||||||| |||||||||||| ||||||    
T  42179973 aatcaaaatcgatggattttaccaaaaaaaatataatactatatatatgttataaatggtatatagtcataaatgacttagttta 42180057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 16446700 - 16446762
Alignment:
Q  97 taatgctaaatatatgttataaattgtatataatcataaatgactcagtttaaagtccacaaa 159  Q
    |||| ||||||||||||||||||||| ||||||||||| |||||||||||| ||| |||||||    
T  16446700 taatactaaatatatgttataaattgcatataatcatatatgactcagtttcaagcccacaaa 16446762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 21846109 - 21846171
Alignment:
Q  4 taaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    |||||||||||||||||||||||||||| ||| ||  | ||||||||||||||||||||||||    
T  21846109 taaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatataagaaat 21846171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 18337239 - 18337300
Alignment:
Q  110 atgttataaattgtatataatcataaatgactc-agtttaaagtccacaaaatacttataca 170  Q
    ||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||| |||||    
T  18337239 atgttataaattgtatatagtcataaatgactcaagtttaaaatccacaaaatactcataca 18337300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 23528953 - 23528888
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    ||||||||||||||||||||||||||||||| ||| ||  | |||||||||||||||||| |||||    
T  23528953 tcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatataggaaat 23528888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 41032605 - 41032670
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    ||||||||||||||  |||||||||| |||| ||| ||||| ||||||||||||||||||||||||    
T  41032605 tcgtaaaatcgcaactaaaatcgaagaattttactcaactagttttgtagaatcgatataagaaat 41032670  T

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Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 13100487 - 13100421
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatc 67  Q
    |||||||||||||||||||||| |||||||| ||| ||  |  ||||||||||||||||||||||||    
T  13100487 tcgtaaaatcgcaatcaaaatcaaaggattttactcaaggacatttgtagaatcgatataagaaatc 13100421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 141
Target Start/End: Original strand, 13276175 - 13276251
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgact 141  Q
    |||||||||||||||||| | |||||| | || |||| |||||||||||||||||||  |||||| ||||||||||||    
T  13276175 aatcaaaatcgatggactataccaaaaaataa-taatactaaatatatgttataaatgatatatagtcataaatgact 13276251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 16434806 - 16434733
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatcaaaatcg 74  Q
    ||||||||| ||||||||||||||||||||| |||  || | ||||||||||| ||||||||| | ||||||||    
T  16434806 tcgtaaaattgcaatcaaaatcgaaggattttactcgacaacttttgtagaattgatataagataacaaaatcg 16434733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 18304643 - 18304708
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    ||||||||||||| ||||||||||||||||| ||| ||  | |||||||||||||||||| |||||    
T  18304643 tcgtaaaatcgcattcaaaatcgaaggattttactaaaggacttttgtagaatcgatataggaaat 18304708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 32881617 - 32881552
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    ||||||||||||||   |||||||||||||| ||| |||||  |||||||||||||||||||||||    
T  32881617 tcgtaaaatcgcaactgaaatcgaaggattttactcaactacgtttgtagaatcgatataagaaat 32881552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 64 - 148
Target Start/End: Original strand, 9351972 - 9352055
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagttta 148  Q
    |||||||||||||| | ||| || ||| |||| |||| ||||||||||||||||||| ||||||| ||| |||||||| ||||||    
T  9351972 aatcaaaatcgatgaattttacccaaa-aaaattaatactaaatatatgttataaatggtatatagtcaaaaatgacttagttta 9352055  T

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Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 64 - 148
Target Start/End: Original strand, 25146678 - 25146761
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagttta 148  Q
    |||||||||||||||| ||| || ||| |||| | || ||||||||| ||||||||||||||||| |||||||| ||| ||||||    
T  25146678 aatcaaaatcgatggattttacccaaa-aaaattgatactaaatatacgttataaattgtatatagtcataaataacttagttta 25146761  T

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Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 13276112 - 13276163
Alignment:
Q  13 aatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    ||||||||||||||||||  ||||||  ||||||||||||||||||||||||||    
T  13276112 aatcaaaatcgaaggatt--acttaaggaattttgtagaatcgatataagaaat 13276163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 14074318 - 14074380
Alignment:
Q  4 taaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    ||||||| |||||||||||||||||||| ||| ||  | |||||||||||||||||| |||||    
T  14074318 taaaatcacaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatataggaaat 14074380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 21242859 - 21242921
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataaga 63  Q
    ||||||||||| ||| | ||| |||| |||| ||| |||||||||||||||||||||||||||    
T  21242859 tcgtaaaatcgtaattacaattgaagaattttactcaactaattttgtagaatcgatataaga 21242921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 141
Target Start/End: Original strand, 18304720 - 18304796
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgact 141  Q
    |||||||||||||||| |||  ||||| |||| |||| ||||||||| ||||| ||| ||||||| ||||||||||||    
T  18304720 aatcaaaatcgatggattttatcaaaa-aaaattaatactaaatatacgttatgaatggtatatagtcataaatgact 18304796  T

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Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 19009780 - 19009845
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    |||||||||||||||||||||| |||||||| ||| ||  | ||||||| |||||||||| |||||    
T  19009780 tcgtaaaatcgcaatcaaaatcaaaggattttactcaagaacttttgtaaaatcgatataggaaat 19009845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 30619234 - 30619181
Alignment:
Q  6 aaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatat 59  Q
    |||||||||  ||||||||||||||| ||| ||||| |||||||||||||||||    
T  30619234 aaatcgcaacaaaaatcgaaggattttactcaactacttttgtagaatcgatat 30619181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 8773565 - 8773506
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatata 60  Q
    ||||||||||||||| ||||| ||||||||| ||||||  | ||||||||||| ||||||    
T  8773565 tcgtaaaatcgcaattaaaattgaaggattttacttaaggatttttgtagaattgatata 8773506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 25146600 - 25146659
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatata 60  Q
    ||||||||||||||||||||||||||||||| ||| ||    ||| ||||||||||||||    
T  25146600 tcgtaaaatcgcaatcaaaatcgaaggattttactcaaggtctttcgtagaatcgatata 25146659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 9321567 - 9321597
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggattt 31  Q
    |||||||||||||||||||||||||||||||    
T  9321567 tcgtaaaatcgcaatcaaaatcgaaggattt 9321597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 9954865 - 9954895
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggattt 31  Q
    |||||||||||||||||||||||||||||||    
T  9954865 tcgtaaaatcgcaatcaaaatcgaaggattt 9954895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 18337472 - 18337542
Alignment:
Q  187 tggacaaaatccttaaaaaccgtttaaaatcctgcaattttgtatgaatttcacgattttg-tgcgatttt 256  Q
    |||||||||| | | || ||| ||||||||||| | |||||||||| |||||||||||||| |||||||||    
T  18337472 tggacaaaattcatcaagaccctttaaaatcctacgattttgtatggatttcacgattttgatgcgatttt 18337542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 177
Target Start/End: Original strand, 39845218 - 39845252
Alignment:
Q  143 agtttaaagtccacaaaatacttatacataaatga 177  Q
    |||||||||||||||||||||||||| ||||||||    
T  39845218 agtttaaagtccacaaaatacttataaataaatga 39845252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 42179903 - 42179933
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggattt 31  Q
    |||||||||||||||||||||||||||||||    
T  42179903 tcgtaaaatcgcaatcaaaatcgaaggattt 42179933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 177
Target Start/End: Complemental strand, 8773138 - 8773066
Alignment:
Q  107 tatatgttataaattgtatataatcataaatgact--cagtttaaagtccacaaaatacttatacataaatga 177  Q
    |||||||||||||||| ||| | ||||||||||||   |||| ||||||| |||||||  |||||||||||||    
T  8773138 tatatgttataaattgcatagagtcataaatgacttaaagttcaaagtccgcaaaataaatatacataaatga 8773066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 140
Target Start/End: Original strand, 9954942 - 9955019
Alignment:
Q  64 aatcaaaatcgatggactttgc-caaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgac 140  Q
    |||||| ||||||||| ||| | ||||| || | |||| || |||||||||||||||| ||||||| |||||||||||    
T  9954942 aatcaagatcgatggattttacacaaaaaaataataatactgaatatatgttataaatggtatatagtcataaatgac 9955019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 120
Target Start/End: Complemental strand, 16434731 - 16434674
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagt-aatgctaaatatatgttataaat 120  Q
    |||||||||||||||| | | ||||||||||| | |||| ||||||||||||||||||    
T  16434731 aatcaaaatcgatggattctaccaaaacaaaaattaatgataaatatatgttataaat 16434674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 17055999 - 17056035
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgactta 37  Q
    |||||||||||||||||||||||| |||||| |||||    
T  17055999 tcgtaaaatcgcaatcaaaatcgatggattttactta 17056035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 21846210 - 21846258
Alignment:
Q  92 aaaagtaatgctaaatatatgttataaattgtatataatcataaatgac 140  Q
    |||| |||| |||||||||||||||||||| |||||| | |||||||||    
T  21846210 aaaattaatactaaatatatgttataaattatatatagttataaatgac 21846258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 4 - 177
Target Start/End: Original strand, 8794 - 8981
Alignment:
Q  4 taaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaa--------------atcaaaatcgatggactttgccaaa 89  Q
    |||||||| ||||||||||||||||||| ||| ||||| ||||||||||| ||||||||||              ||||||||||||||| ||| |||||    
T  8794 taaaatcgtaatcaaaatcgaaggattttactcaactacttttgtagaatagatataagaacttgtaaaatcgcaatcaaaatcgatggattttaccaaa 8893  T
Q  90 acaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagtttaaagtccacaaaatacttatacataaatga 177  Q
    |||||  |||||||||||||||||||||| ||||||||| ||||||||||||||||||||  |||||| ||||||||||  |||||||    
T  8894 acaaagataatgctaaatatatgttataagttgtatatagtcataaatgactcagtttaatttccacacaatacttatatgtaaatga 8981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 9e-36; HSPs: 44)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 64 - 284
Target Start/End: Original strand, 4841738 - 4841956
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagtttaaagtccacaaaatac 163  Q
    |||||||||||||| | ||| |||||||||||   |||| |||||||||||||||||||  |||| |||||||| |||| |||||||||||| |||||      
T  4841738 aatcaaaatcgatgtattttaccaaaacaaaaaatatgcaaaatatatgttataaattg--tatagtcataaattactcggtttaaagtccataaaatgt 4841835  T
Q  164 ttatacataaatgattnnnnnnntggacaaaatccttaaaaaccgtttaaaatcctgcaattttgtatgaatttcacgattttgtgcgattttgatggac 263  Q
    |||||||||||||| |       || ||||||||||  |||||| ||||||||| ||| || |||||||||| |||||||||||||||||||||| |       
T  4841836 ttatacataaatgactaaaaaaatgcacaaaatcctccaaaaccctttaaaatcatgcgatcttgtatgaatctcacgattttgtgcgattttgaagcga 4841935  T
Q  264 ttttacaaggattttgcctat 284  Q
    |||||| || |||||||||||    
T  4841936 ttttactagtattttgcctat 4841956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 85 - 177
Target Start/End: Complemental strand, 31407495 - 31407401
Alignment:
Q  85 ccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactc--agtttaaagtccacaaaatacttatacataaatga 177  Q
    ||||||||||| ||||| |||||||||||||||||||| ||||  |||||||||||||  |||||||| ||||||||||||||||||||||||||    
T  31407495 ccaaaacaaaaataatgttaaatatatgttataaattgcatattgtcataaatgactcaaagtttaaattccacaaaatacttatacataaatga 31407401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 64 - 177
Target Start/End: Original strand, 18490548 - 18490661
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagtttaaagtccacaaaatac 163  Q
    ||||||||| |||||| | | ||||| ||||| ||||| |||||||||||||||||| ||||||| |  ||||| ||||||| |||||||||||||||||    
T  18490548 aatcaaaattgatggattctaccaaatcaaaaataatgataaatatatgttataaatcgtatatagtgctaaataactcagtataaagtccacaaaatac 18490647  T
Q  164 ttatacataaatga 177  Q
     |||||||||||||    
T  18490648 atatacataaatga 18490661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 64 - 166
Target Start/End: Original strand, 20399995 - 20400099
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactca--gtttaaagtccacaaaat 161  Q
    |||||||||||||||| |   ||||||||||| ||||| |||||||||||||||||||| ||||| |||||||| |||||  ||||||||||||||||||    
T  20399995 aatcaaaatcgatggattccaccaaaacaaaaataatgataaatatatgttataaattgcatatagtcataaataactcaatgtttaaagtccacaaaat 20400094  T
Q  162 actta 166  Q
    |||||    
T  20400095 actta 20400099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 85 - 162
Target Start/End: Original strand, 5422589 - 5422665
Alignment:
Q  85 ccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagtttaaagtccacaaaata 162  Q
    ||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||| || ||||||||||||||||||    
T  5422589 ccaaaacaaaaataatgctaaatatatgttataaattatatatagtcataaatgac-caatttaaagtccacaaaata 5422665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 64 - 177
Target Start/End: Original strand, 33593072 - 33593187
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactc--agtttaaagtccacaaaat 161  Q
    |||||||||||||||| | | |||||| |||| ||||| |||| ||||||||||||||| ||||| |||| | ||||||  ||||| ||||| |||||||    
T  33593072 aatcaaaatcgatggattctaccaaaagaaaaataatgttaaacatatgttataaattgcatatagtcattattgactcaaagtttcaagtctacaaaat 33593171  T
Q  162 acttatacataaatga 177  Q
    ||||||||||||||||    
T  33593172 acttatacataaatga 33593187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 85 - 176
Target Start/End: Complemental strand, 27890573 - 27890480
Alignment:
Q  85 ccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgact--cagtttaaagtccacaaaatacttatacataaatg 176  Q
    ||||||||||| |||||||||||||||||||||||||| ||||| |||||||||| |   |||| |||||||||||||||| |||| |||||||    
T  27890573 ccaaaacaaaaataatgctaaatatatgttataaattgcatatagtcataaatgagttaaagttcaaagtccacaaaatacatatatataaatg 27890480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 64 - 177
Target Start/End: Original strand, 20432515 - 20432629
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactc--agtttaaagtccacaaaat 161  Q
    |||||||||||||||| |   ||||||||||| |||| |||| |||||||||||||||| ||||| |||||||| ||||  | ||| |||||||||||||    
T  20432515 aatcaaaatcgatggattccaccaaaacaaaaataatactaa-tatatgttataaattgcatatagtcataaataactcaaaattttaagtccacaaaat 20432613  T
Q  162 acttatacataaatga 177  Q
    |||| |||||||||||    
T  20432614 acttttacataaatga 20432629  T

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Target: chr6; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 23898107 - 23897948
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat--------------caaaatcgatggactttgcc 86  Q
    ||||||||||| || |||||||||||||||| ||| ||||| ||| ||||||||||||||||||||              ||||||||||||| ||| ||    
T  23898107 tcgtaaaatcgaaaccaaaatcgaaggattttactcaactacttt-gtagaatcgatataagaaattgtaaaatctcaatcaaaatcgatggattttacc 23898009  T
Q  87 aaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagttta 148  Q
    |||| ||||  ||| ||||||||||||||||||| ||||||| |||||||||||| ||||||    
T  23898008 aaaaaaaaaa-aatactaaatatatgttataaatggtatatagtcataaatgacttagttta 23897948  T

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Target: chr6; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 279
Target Start/End: Original strand, 18490780 - 18490917
Alignment:
Q  142 cagtttaaagtccacaaaatacttatacataaatgattnnnnnnntggacaaaatccttaaaaaccgtttaaaatcctgcaattttgtatgaatttcacg 241  Q
    ||||||||||| |||||||||||| ||||||||||| |       |||| ||||||||| ||||   ||||||||  |  ||||||||||| ||||||||    
T  18490780 cagtttaaagttcacaaaatacttgtacataaatgactaaaaaaatggataaaatccttcaaaattctttaaaattataaaattttgtatggatttcacg 18490879  T
Q  242 attttgtgcgattttgatggacttttacaaggattttg 279  Q
    |||||||| |||||||| | | |||||| |||||||||    
T  18490880 attttgtgtgattttgaagcaattttactaggattttg 18490917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 20432425 - 20432484
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatata 60  Q
    ||||||||||||||||||||| |||| |||| ||||||||| ||||||||||||||||||    
T  20432425 tcgtaaaatcgcaatcaaaattgaagaattttacttaactagttttgtagaatcgatata 20432484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 234
Target Start/End: Original strand, 3573866 - 3573969
Alignment:
Q  131 cataaatgactcagtttaaagtccacaaaatacttatacataaatgattnnnnnnntggacaaaatccttaaaaaccgtttaaaatcctgcaattttgta 230  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||| |       |||| ||||| ||| |||||| ||||| ||| |||||||||||     
T  3573866 cataaatgactcagattaaagtccacaaaatacttaaacataaatgactaaaaaaatggaaaaaattcttcaaaaccctttaacatcatgcaattttgtt 3573965  T
Q  231 tgaa 234  Q
    ||||    
T  3573966 tgaa 3573969  T

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Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 85 - 177
Target Start/End: Original strand, 7621909 - 7622004
Alignment:
Q  85 ccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactc---agtttaaagtccacaaaatacttatacataaatga 177  Q
    ||||||||||| ||||| ||||||||| ||||||||||  |||| |||||||||| ||   ||||| |||| || |||||||||||||||||||||    
T  7621909 ccaaaacaaaaataatgataaatatatattataaattgcctatagtcataaatgattcaaaagtttcaagttcataaaatacttatacataaatga 7622004  T

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Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 19748630 - 19748565
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    ||||||||||||||||||||||||||||||| ||| ||  | |||||||||||||||||| |||||    
T  19748630 tcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatataggaaat 19748565  T

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Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 143
Target Start/End: Complemental strand, 645470 - 645415
Alignment:
Q  88 aaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactca 143  Q
    |||||| | |||||||||||||||||||||||||| ||||| ||||||||||||||    
T  645470 aaacaataataatgctaaatatatgttataaattgcatatagtcataaatgactca 645415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 3573732 - 3573797
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    ||||||||||||||||||||||| |||| || ||| ||||| | ||||||||| ||||||||||||    
T  3573732 tcgtaaaatcgcaatcaaaatcgtaggaatttactcaactactcttgtagaatagatataagaaat 3573797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 7223812 - 7223747
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    ||||||||| ||||||||||||||||||||| ||| ||  | |||||||||||||||||| |||||    
T  7223812 tcgtaaaattgcaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatataggaaat 7223747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 11327394 - 11327459
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    |||||||||||||||||||||||||| |||| ||| ||  | |||||||||||||||||| |||||    
T  11327394 tcgtaaaatcgcaatcaaaatcgaagaattttactcaaggacttttgtagaatcgatataggaaat 11327459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 15527946 - 15528007
Alignment:
Q  5 aaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    ||||||||||||||||||||||||||| ||| ||  | |||||||||||||||||| |||||    
T  15527946 aaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatataggaaat 15528007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 175
Target Start/End: Complemental strand, 31108341 - 31108252
Alignment:
Q  86 caaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgact--cagtttaaagtccacaaaatacttatacataaat 175  Q
    |||||||||||||| |||||||| |||||||||||||   ||| ||||||||||||   |||| ||||||| |||||||| |||||||||||    
T  31108341 caaaacaaaagtaaagctaaatacatgttataaattg--catagtcataaatgacttaaagttcaaagtccgcaaaatacatatacataaat 31108252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 64 - 148
Target Start/End: Original strand, 26053205 - 26053288
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagttta 148  Q
    |||||||||||||||| ||| |||||| | || |||| |||| |||||||||||||| ||||||| |||||||| ||| ||||||    
T  26053205 aatcaaaatcgatggattttaccaaaaaataa-taatactaactatatgttataaatggtatatagtcataaataacttagttta 26053288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 64 - 148
Target Start/End: Original strand, 26073258 - 26073341
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagttta 148  Q
    |||||||||||||||| ||| |||||| | || |||| |||| |||||||||||||| ||||||| |||||||| ||| ||||||    
T  26073258 aatcaaaatcgatggattttaccaaaaaataa-taatactaactatatgttataaatggtatatagtcataaataacttagttta 26073341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 30912238 - 30912305
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatca 68  Q
    |||||||||| ||| |||||| ||||||||| | | ||||| ||||||| ||||||||||||||||||    
T  30912238 tcgtaaaatctcaaccaaaattgaaggattttattcaactacttttgtaaaatcgatataagaaatca 30912305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 17103492 - 17103427
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    |||||||||||||||||| | |||||||||| ||| ||  | |||||||||||||||||| |||||    
T  17103492 tcgtaaaatcgcaatcaataccgaaggattttactcaaggacttttgtagaatcgatataggaaat 17103427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 22498272 - 22498337
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    ||||||||||||||||||||| ||| ||||| ||| ||  | |||||||||||||||||| |||||    
T  22498272 tcgtaaaatcgcaatcaaaattgaacgattttactcaaagacttttgtagaatcgatataggaaat 22498337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 27890683 - 27890611
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatcaaaatc 73  Q
    ||||||||||| ||||||||| ||||||||| ||| ||  | |||||||||||||||||| || | |||||||    
T  27890683 tcgtaaaatcgtaatcaaaattgaaggattttactcaaggacttttgtagaatcgatataggatagcaaaatc 27890611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 148
Target Start/End: Original strand, 30912348 - 30912404
Alignment:
Q  92 aaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagttta 148  Q
    |||| |||| |||||||||||| ||||||  ||||||||||||||||||| ||||||    
T  30912348 aaaaataatactaaatatatgtgataaatgatatataatcataaatgacttagttta 30912404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 148
Target Start/End: Complemental strand, 7223692 - 7223649
Alignment:
Q  105 aatatatgttataaattgtatataatcataaatgactcagttta 148  Q
    |||||||||||||||| ||||||| |||||||||||| ||||||    
T  7223692 aatatatgttataaatggtatatagtcataaatgacttagttta 7223649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 141
Target Start/End: Original strand, 7918259 - 7918333
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgact 141  Q
    |||||||||||||||| ||| |||||| ||   |||| |||||| ||||||||||||  |||||| ||||||||||||    
T  7918259 aatcaaaatcgatggattttaccaaaaaaa---taatactaaatttatgttataaatgatatatagtcataaatgact 7918333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 148
Target Start/End: Original strand, 15528051 - 15528102
Alignment:
Q  97 taatgctaaatatatgttataaattgtatataatcataaatgactcagttta 148  Q
    |||| ||||||||||||||||||| ||||||| | |||||||||| ||||||    
T  15528051 taatactaaatatatgttataaatggtatatagttataaatgacttagttta 15528102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 17543565 - 17543620
Alignment:
Q  4 taaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatat 59  Q
    |||||||| ||||||||||||||||||| ||| ||  | |||||||||||||||||    
T  17543565 taaaatcgaaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatat 17543620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 148
Target Start/End: Original strand, 17543681 - 17543732
Alignment:
Q  97 taatgctaaatatatgttataaattgtatataatcataaatgactcagttta 148  Q
    |||| ||||||||||||||||||| ||||||| || ||||||||| ||||||    
T  17543681 taatactaaatatatgttataaatggtatatagtcgtaaatgacttagttta 17543732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 21354928 - 21354877
Alignment:
Q  97 taatgctaaatatatgttataaattgtatataatcataaatgactcagttta 148  Q
    |||| ||||||||||||||||||| ||||||| |||||||| ||| ||||||    
T  21354928 taatactaaatatatgttataaatggtatatagtcataaattacttagttta 21354877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 4841665 - 4841715
Alignment:
Q  5 aaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcg 55  Q
    |||||| ||||||||||| |||||||| ||| ||||| |||||||||||||    
T  4841665 aaaatcacaatcaaaatcaaaggattttactcaactacttttgtagaatcg 4841715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 177
Target Start/End: Complemental strand, 7857148 - 7857099
Alignment:
Q  130 tcataaatgactca--gtttaaagtccacaaaatacttatacataaatga 177  Q
    ||||||||||||||  |||| | |||||||||||||||||||||||||||    
T  7857148 tcataaatgactcaaagtttgaggtccacaaaatacttatacataaatga 7857099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 26053128 - 26053186
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatat 59  Q
    |||||||||| |||||||||||||| ||||| ||| ||  | |||||||||||||||||    
T  26053128 tcgtaaaatcccaatcaaaatcgaatgattttactcaatgacttttgtagaatcgatat 26053186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 26073181 - 26073239
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatat 59  Q
    |||||||||| |||||||||||||| ||||| ||| ||  | |||||||||||||||||    
T  26073181 tcgtaaaatcccaatcaaaatcgaatgattttactcaatgacttttgtagaatcgatat 26073239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 28669594 - 28669544
Alignment:
Q  7 aatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgat 57  Q
    ||||||||| ||||  ||||||||| ||||||||| |||||||||||||||    
T  28669594 aatcgcaataaaaaatgaaggattttacttaactatttttgtagaatcgat 28669544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 2912093 - 2912158
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    ||||||||||  |||| |||| ||||||||| ||| ||||| ||||||||||| | ||||||||||    
T  2912093 tcgtaaaatcataatcgaaattgaaggattttactcaactacttttgtagaattgttataagaaat 2912158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 7918182 - 7918247
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    ||||||||| |||||||||||||||| |||| ||| ||  | |||||||||||| ||||| |||||    
T  7918182 tcgtaaaattgcaatcaaaatcgaagaattttactcaaggacttttgtagaatcaatataggaaat 7918247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 177
Target Start/End: Complemental strand, 28669455 - 28669422
Alignment:
Q  144 gtttaaagtccacaaaatacttatacataaatga 177  Q
    ||||||| ||||||||||||||||||||||||||    
T  28669455 gtttaaattccacaaaatacttatacataaatga 28669422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 33583499 - 33583559
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataag 62  Q
    ||||||||||  |||||||||||||| |||| ||||||  | ||||||||||||||||||||    
T  33583499 tcgtaaaatcaaaatcaaaatcgaag-attttacttaaggacttttgtagaatcgatataag 33583559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 260
Target Start/End: Original strand, 5422725 - 5422761
Alignment:
Q  224 ttttgtatgaatttcacgattttgtgcgattttgatg 260  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  5422725 ttttgtatgaattccacaattttgtgcgattttgatg 5422761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 33592983 - 33593054
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatcaaaatc 73  Q
    ||||||||| |||||| |||||||| ||||| ||| ||||| ||||||||||| |||||| || | |||||||    
T  33592983 tcgtaaaattgcaatcgaaatcgaatgattt-actcaactacttttgtagaattgatataggatagcaaaatc 33593054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 35)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 64 - 177
Target Start/End: Original strand, 26575032 - 26575147
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactc--agtttaaagtccacaaaat 161  Q
    |||||||||||||||| | | ||||||||||| | |||||||| ||||||| ||||||| |||||||||||||||||||  |||||||||||||||||||    
T  26575032 aatcaaaatcgatggattctaccaaaacaaaattgatgctaaaaatatgttttaaattgaatataatcataaatgactcaaagtttaaagtccacaaaat 26575131  T
Q  162 acttatacataaatga 177  Q
    ||||||||||||||||    
T  26575132 acttatacataaatga 26575147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 15761190 - 15761375
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaa--------------atcaaaatcgatggactttgcc 86  Q
    |||||||||||||||  |||||||||||||| ||| || || ||||||||||||||||||||||              ||||||||||||||| ||| ||    
T  15761190 tcgtaaaatcgcaatataaatcgaaggattttactcaattacttttgtagaatcgatataagaagtagtaaaatcgcaatcaaaatcgatggattttacc 15761289  T
Q  87 aaaacaaaagtaatgctaaatatatgttataaattgtatat--aatcataaatgactcagtttaaagtccacaaaatacttataca 170  Q
    ||||||||| |||||||||||||||||||||||||||||||  | |||||||||| | |||||||| | ||||||||| |||||||    
T  15761290 aaaacaaaaataatgctaaatatatgttataaattgtatatagagtcataaatgagtaagtttaaaattcacaaaatagttataca 15761375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 64 - 173
Target Start/End: Original strand, 1018090 - 1018199
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagtttaaagtccacaaaatac 163  Q
    ||||||||||||| || | | |||||| |||| ||||| ||||| ||||||||||||| |||||| ||||||||||| || ||||||||| |||||||||    
T  1018090 aatcaaaatcgatagattctaccaaaataaaaataatgttaaatgtatgttataaattatatatagtcataaatgacccactttaaagtcaacaaaatac 1018189  T
Q  164 ttatacataa 173  Q
    ||||||||||    
T  1018190 ttatacataa 1018199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 17647291 - 17647229
Alignment:
Q  4 taaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    |||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||    
T  17647291 taaaatcgcaatcaaaatcgaaggattttactcaactagttttgtagaatcgatataagaaat 17647229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 45403326 - 45403173
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataaga-------------aatcaaaatcgatggactttgcca 87  Q
    ||||||||||||||||||||||||||||||| ||||||  | |||||||||||||||||| ||             ||||||||||||| || ||| |||    
T  45403326 tcgtaaaatcgcaatcaaaatcgaaggattttacttaaagacttttgtagaatcgatataggaaattgtaaaacgcaatcaaaatcgatagattttacca 45403227  T
Q  88 aaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgact 141  Q
    ||| || | ||||  |||||||||||||||||| |||||| |||||||||||||    
T  45403226 aaaaaataataatattaaatatatgttataaatggtatattatcataaatgact 45403173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 175
Target Start/End: Complemental strand, 8582263 - 8582153
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagtttaaagtccacaaaatac 163  Q
    |||||||||||||| | ||| |||||||| || ||||| ||||||||||||||| ||||||  || | |||||| || |  ||||||||||||||||||     
T  8582263 aatcaaaatcgatgaattttaccaaaacataaataatgttaaatatatgttatacattgtaattagttataaattac-cgatttaaagtccacaaaatat 8582165  T
Q  164 ttatacataaat 175  Q
    ||||||||||||    
T  8582164 ttatacataaat 8582153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 141
Target Start/End: Complemental strand, 23142394 - 23142319
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgact 141  Q
    |||||||||||||||||||| ||||||  ||  |||| ||||||||||||||||||| ||||||| ||||||||||||    
T  23142394 aatcaaaatcgatggactttaccaaaaataa--taatactaaatatatgttataaatggtatatagtcataaatgact 23142319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 29384144 - 29384210
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatc 67  Q
    |||||||||||||| |||||||||||||||| ||| ||||| |||||||||||  ||||||||||||    
T  29384144 tcgtaaaatcgcaaccaaaatcgaaggattttactcaactacttttgtagaattaatataagaaatc 29384210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 177
Target Start/End: Original strand, 40541770 - 40541856
Alignment:
Q  92 aaaagtaatgctaaatatatgttataaattgtatataatcataaatgact-cagtttaaagtccacaaaatacttatacataaatga 177  Q
    |||| ||||| |||||||||||||||||||| ||||| ||||||||||||  |||| || || |||||||||| |||||||||||||    
T  40541770 aaaaataatgttaaatatatgttataaattgcatatagtcataaatgactaaagttcaaggtacacaaaatacgtatacataaatga 40541856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 6811116 - 6810958
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat-------------caaaatcgatggactttgcca 87  Q
    |||||||||||||| ||||||||||| |||| | | ||||| ||||||||||| ||||||||||||             ||||||||||||| ||| |||    
T  6811116 tcgtaaaatcgcaaccaaaatcgaagaattttaatcaactacttttgtagaatagatataagaaattgaaaatcgcaatcaaaatcgatggattttacca 6811017  T
Q  88 aaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagttta 148  Q
    ||| |||  |||| |||||||||||||||||||  |||||| | |||||||||| ||||||    
T  6811016 aaaaaaa--taatactaaatatatgttataaatgatatatagttataaatgacttagttta 6810958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 87 - 175
Target Start/End: Complemental strand, 16752208 - 16752119
Alignment:
Q  87 aaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgact-cagtttaaagtccacaaaatacttatacataaat 175  Q
    ||||||||| ||||| |||||||||||||||||||| ||||| |||||||||| |  |||| ||||| || ||||||| |||||||||||    
T  16752208 aaaacaaaaataatgttaaatatatgttataaattgcatatagtcataaatgagtaaagttcaaagttcataaaatacatatacataaat 16752119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 17566395 - 17566217
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat--caaaatcg------atggactttgccaaaac- 91  Q
    ||||||||| |||||||||||||||| |||| ||| ||||| ||||||||||  ||||||||||||   |||||||      ||||| ||| |||||||     
T  17566395 tcgtaaaattgcaatcaaaatcgaagaattttactcaactacttttgtagaacagatataagaaattgtaaaatcgcaatcaatggattttaccaaaaca 17566296  T
Q  92 aaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagtttaaagtccacaaaatacttatacataaatga 177  Q
    ||||  |||||||||       ||||||||||||||| |||| |||| || |||||||||| ||||||||||| ||| ||||||||    
T  17566295 aaaaaaaatgctaaa-------tataaattgtatatagtcattaatggcttagtttaaagttcacaaaatactcatagataaatga 17566217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 24414119 - 24414184
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    ||||||||||||||||||||||||||||||| ||| ||  | |||||||||||||||||| |||||    
T  24414119 tcgtaaaatcgcaatcaaaatcgaaggattttactcaagaatttttgtagaatcgatataggaaat 24414184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 15294963 - 15294900
Alignment:
Q  4 taaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatc 67  Q
    |||||||||||||||||||||||||||| ||| ||  | |||||||||||| ||||||||||||    
T  15294963 taaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtagaatccatataagaaatc 15294900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 15475332 - 15475269
Alignment:
Q  4 taaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatc 67  Q
    |||||||||||||||||||||||||||| ||| ||  | |||||||||||| ||||||||||||    
T  15475332 taaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtagaatccatataagaaatc 15475269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 24056523 - 24056578
Alignment:
Q  192 aaaatccttaaaaaccgtttaaaatcctgcaattttgtatgaatttcacgattttg 247  Q
    |||||||||  ||||| | |||||||||||||||||||||||||||||||||||||    
T  24056523 aaaatccttcgaaaccttataaaatcctgcaattttgtatgaatttcacgattttg 24056578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 11879897 - 11879737
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaa--------------tcaaaatcgatggactttgcc 86  Q
    ||||||||||||||||||||||||||||||| || |||  | |||| |||||||||||||  |||              |||||||||||||| ||| ||    
T  11879897 tcgtaaaatcgcaatcaaaatcgaaggattttacctaagaacttttatagaatcgatatagaaaattgtaaaatcgcattcaaaatcgatggattttacc 11879798  T
Q  87 aaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagttta 148  Q
    |||| || | |||| ||||||||||||||||||| ||||||| |||||||| ||| ||||||    
T  11879797 aaaa-aataataatactaaatatatgttataaatggtatatagtcataaattacttagttta 11879737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 11897313 - 11897153
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaa--------------tcaaaatcgatggactttgcc 86  Q
    ||||||||||||||||||||||||||||||| || |||  | |||| |||||||||||||  |||              |||||||||||||| ||| ||    
T  11897313 tcgtaaaatcgcaatcaaaatcgaaggattttacctaagaacttttatagaatcgatatagaaaattgtaaaatcgcattcaaaatcgatggattttacc 11897214  T
Q  87 aaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagttta 148  Q
    |||| || | |||| ||||||||||||||||||| ||||||| |||||||| ||| ||||||    
T  11897213 aaaa-aataataatactaaatatatgttataaatggtatatagtcataaattacttagttta 11897153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 22910035 - 22910101
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatc 67  Q
    |||||||||||||| | |||| ||||||||| | | ||||| |||||||||||||||||||||||||    
T  22910035 tcgtaaaatcgcaaccgaaattgaaggattttattcaactatttttgtagaatcgatataagaaatc 22910101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 64 - 148
Target Start/End: Original strand, 3094151 - 3094235
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagttta 148  Q
    ||||||||| ||| || ||| | |||| ||||  ||| ||||||||||||||||||| ||||||| |||||||||||| ||||||    
T  3094151 aatcaaaattgatagattttacaaaaaaaaaaaaaatactaaatatatgttataaatggtatatagtcataaatgacttagttta 3094235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 5922339 - 5922280
Alignment:
Q  7 aatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    ||||||||||||||||||||||||| ||| ||  | |||||||||||||||||| |||||    
T  5922339 aatcgcaatcaaaatcgaaggattttactcaagaacttttgtagaatcgatataggaaat 5922280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 7489115 - 7489174
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatata 60  Q
    ||||||||||||||||||||||| ||||||| ||| ||  | ||||||||||||||||||    
T  7489115 tcgtaaaatcgcaatcaaaatcggaggattttactcaaggacttttgtagaatcgatata 7489174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 24056405 - 24056467
Alignment:
Q  4 taaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    |||||| | ||||||||||||||||||| ||| ||||| |||||||||||| |||||| ||||    
T  24056405 taaaatggtaatcaaaatcgaaggattttactcaactagttttgtagaatcaatataacaaat 24056467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 139
Target Start/End: Original strand, 29384221 - 29384300
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaag----taatgctaaatatatgttataaattgtatataatcataaatga 139  Q
    |||||||||||||||| ||| |||||| ||||     |||| ||||||||||||||||||| ||||||| ||||||||||    
T  29384221 aatcaaaatcgatggattttaccaaaaaaaaaaatactaatactaaatatatgttataaatggtatatagtcataaatga 29384300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 15231918 - 15231853
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    ||||||||||||||  ||||||| | ||||| ||| ||||| ||||||||||||||||||| ||||    
T  15231918 tcgtaaaatcgcaactaaaatcgtacgattttactcaactacttttgtagaatcgatataaaaaat 15231853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 16752320 - 16752251
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatcaaa 70  Q
    |||||||||||||| |||||||||||||||| ||| ||  ||||||||||||| ||| || |||| ||||    
T  16752320 tcgtaaaatcgcaaacaaaatcgaaggattttactcaaggaattttgtagaattgatgtaggaaagcaaa 16752251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 32424631 - 32424566
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    ||||||||||||||| ||||||||||||||| ||| ||  | |||||||||||||| ||| |||||    
T  32424631 tcgtaaaatcgcaattaaaatcgaaggattttactcaaggagttttgtagaatcgagataggaaat 32424566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 2040416 - 2040360
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgat 57  Q
    ||||||||||||||||||||||||||||||| ||| |   | |||||||||||||||    
T  2040416 tcgtaaaatcgcaatcaaaatcgaaggattttactcatggacttttgtagaatcgat 2040360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 26574949 - 26575001
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaat 53  Q
    ||||||||||||||||||||| ||||||||| || |||||| || ||||||||    
T  26574949 tcgtaaaatcgcaatcaaaattgaaggattttacctaactatttatgtagaat 26575001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 148
Target Start/End: Original strand, 27836373 - 27836456
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagttta 148  Q
    |||||||||||||||| ||| |||  | ||||  ||| ||||||| ||||||||||| ||||||| |||||||||||| ||||||    
T  27836373 aatcaaaatcgatggattttaccagcaaaaaaa-aatactaaatacatgttataaatggtatatagtcataaatgacttagttta 27836456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 27836131 - 27836161
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggattt 31  Q
    |||||||||||||||||||||||||||||||    
T  27836131 tcgtaaaatcgcaatcaaaatcgaaggattt 27836161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 259
Target Start/End: Complemental strand, 16752000 - 16751932
Alignment:
Q  190 acaaaatccttaaaaaccgtttaaaatcctgcaattttgtatgaatttcacgattttgtgcgattttgat 259  Q
    ||||||||||| |||| |  | |||||||||| |||||| ||| |||||| |||||||||||||||||||    
T  16752000 acaaaatccttcaaaatccatcaaaatcctgcgattttgaatggatttca-gattttgtgcgattttgat 16751932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 23142471 - 23142406
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    |||||||||||||||  |||||||| ||||| | | ||  | ||||||||||||||||||||||||    
T  23142471 tcgtaaaatcgcaatttaaatcgaatgattttagtcaaaaacttttgtagaatcgatataagaaat 23142406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 7489224 - 7489268
Alignment:
Q  97 taatgctaaatatatgttataaattgtatataatcataaatgact 141  Q
    |||| |||||||||||||||||||  |||||| ||||||||||||    
T  7489224 taatactaaatatatgttataaatgatatatagtcataaatgact 7489268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 15761391 - 15761451
Alignment:
Q  187 tggacaaaatccttaaaaaccgtttaaaatcctgcaattttgtatgaatttcacgattttg 247  Q
    |||||||||||||| |||||| ||||||||| | | | |||||||| |||||| |||||||    
T  15761391 tggacaaaatccttcaaaaccctttaaaatctttcgactttgtatggatttcatgattttg 15761451  T

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Target: scaffold0115 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 69 - 177
Target Start/End: Original strand, 34903 - 35011
Alignment:
Q  69 aaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagtttaaagtccacaaaatacttata 168  Q
    ||||| ||||| ||| | ||||||||| |||||||| |||||||||||| ||| || ||||||||||||| ||||||||||||||||||||||| |||||    
T  34903 aaatcaatggattttacaaaaacaaaaataatgctacatatatgttatatattatacataatcataaatggctcagtttaaagtccacaaaatatttata 35002  T
Q  169 cataaatga 177  Q
    |||||||||    
T  35003 cataaatga 35011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 243
Target Start/End: Original strand, 35039 - 35073
Alignment:
Q  209 tttaaaatcctgcaattttgtatgaatttcacgat 243  Q
    |||||||||||||||| ||||||||||||||||||    
T  35039 tttaaaatcctgcaatgttgtatgaatttcacgat 35073  T

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Target: scaffold0048 (Bit Score: 62; Significance: 8e-27; HSPs: 7)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 138 - 260
Target Start/End: Original strand, 48680 - 48802
Alignment:
Q  138 gactcagtttaaagtccacaaaatacttatacataaatgattnnnnnnntggacaaaatccttaaaaaccgtttaaaatcctgcaattttgtatgaattt 237  Q
    ||||||||||||||||||||||||| |||||||||||||| |       || ||||||||||| ||||||  |||||||| |||  ||||||||||||||    
T  48680 gactcagtttaaagtccacaaaataattatacataaatgactagaaaaatgaacaaaatccttcaaaacccattaaaatcatgcggttttgtatgaattt 48779  T
Q  238 cacgattttgtgcgattttgatg 260  Q
    |||| ||||||||||||||||||    
T  48780 cacgtttttgtgcgattttgatg 48802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 187 - 269
Target Start/End: Original strand, 61323 - 61405
Alignment:
Q  187 tggacaaaatccttaaaaaccgtttaaaatcctgcaattttgtatgaatttcacgattttgtgcgattttgatggacttttac 269  Q
    |||||||||||||| ||||||  ||||||||||||  |||||||||||||||||| |||||||||||||||||| | ||||||    
T  61323 tggacaaaatccttcaaaacccattaaaatcctgcggttttgtatgaatttcacgtttttgtgcgattttgatgcaattttac 61405  T

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Target: scaffold0048; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 61146 - 61212
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatc 67  Q
    |||||||||| ||||||||||||||| |||| ||||||||| |||||||||||||||||| ||||||    
T  61146 tcgtaaaatcacaatcaaaatcgaagaattttacttaactacttttgtagaatcgatatatgaaatc 61212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 48497 - 48557
Alignment:
Q  4 taaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaa 64  Q
    ||||||| |||||||||||||||||||| ||||||||| |||||||||||||||| |||||    
T  48497 taaaatctcaatcaaaatcgaaggattttacttaactacttttgtagaatcgataaaagaa 48557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 172
Target Start/End: Complemental strand, 48679 - 48616
Alignment:
Q  111 tgttataaattgtatataatcataaatgactc--agtttaaagtccacaaaatacttatacata 172  Q
    |||||||||||||||||| ||||||  |||||  |||||||||||||||||| |||||||||||    
T  48679 tgttataaattgtatatactcataaccgactctcagtttaaagtccacaaaacacttatacata 48616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 172
Target Start/End: Complemental strand, 61299 - 61268
Alignment:
Q  141 tcagtttaaagtccacaaaatacttatacata 172  Q
    ||||||||||||||||||||||||||||||||    
T  61299 tcagtttaaagtccacaaaatacttatacata 61268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 48572 - 48620
Alignment:
Q  65 atcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgt 113  Q
    |||||||||||||||||||  | |||||||| ||||| |||||||||||    
T  48572 atcaaaatcgatggactttatccaaacaaaaataatgttaaatatatgt 48620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1178 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold1178
Description:

Target: scaffold1178; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 64 - 177
Target Start/End: Complemental strand, 542 - 428
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactc--agtttaaagtccacaaaat 161  Q
    |||||||||||| ||| | | ||||||||||| |||||||||||||||| ||||||||| ||||| |||||||||||||  |||| ||||| ||||||||    
T  542 aatcaaaatcga-ggattctaccaaaacaaaaataatgctaaatatatgatataaattgcatatagtcataaatgactcaaagttcaaagtgcacaaaat 444  T
Q  162 acttatacataaatga 177  Q
     | |||||||||||||    
T  443 gcatatacataaatga 428  T

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Target: scaffold0017 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 87 - 175
Target Start/End: Original strand, 38475 - 38565
Alignment:
Q  87 aaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgact--cagtttaaagtccacaaaatacttatacataaat 175  Q
    ||||||||| ||||| |||||||||||||||||||||||||| ||||||| ||||   |||| |||||||||||||||| |||||||||||    
T  38475 aaaacaaaaataatgataaatatatgttataaattgtatatagtcataaaggacttaaagttcaaagtccacaaaatacatatacataaat 38565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 87 - 176
Target Start/End: Original strand, 133059 - 133149
Alignment:
Q  87 aaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatga-ctcagtttaaagtccacaaaatacttatacataaatg 176  Q
    ||||||||| ||||| |||||||||||||||||||| ||||| |||||||||| |  |||| |||||||||||||||| ||||||||||||    
T  133059 aaaacaaaattaatgttaaatatatgttataaattgcatatagtcataaatgaccaaagttcaaagtccacaaaatacatatacataaatg 133149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 132947 - 133003
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgat 57  Q
    |||||||||||||||||||||||||||||||  || ||  | |||||||||||||||    
T  132947 tcgtaaaatcgcaatcaaaatcgaaggattttcctcaaggacttttgtagaatcgat 133003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 177
Target Start/End: Complemental strand, 142814 - 142724
Alignment:
Q  88 aaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactc--agtttaaagtccacaaaatacttatacataaatga 177  Q
    |||||||| |||||||||||||||||||||||||| ||||| ||| |||||| ||  |||| |||||||| ||||||| |||||||||||||    
T  142814 aaacaaaa-taatgctaaatatatgttataaattgcatatagtcaaaaatgattcaaagttcaaagtccaaaaaatacatatacataaatga 142724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0684 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 177
Target Start/End: Original strand, 5161 - 5247
Alignment:
Q  92 aaaagtaatgctaaatatatgttataaattgtatataatcataaatga-ctcagtttaaagtccacaaaatacttatacataaatga 177  Q
    |||| |||||||||||||||||||||||||| || || |||||||||| |  |||| |||||||||||||||| | |||||||||||    
T  5161 aaaaataatgctaaatatatgttataaattgcatgtagtcataaatgatcaaagttcaaagtccacaaaatacatgtacataaatga 5247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0684; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 259
Target Start/End: Original strand, 5554 - 5623
Alignment:
Q  190 acaaaatccttaaaaaccgtttaaaatcctgcaattttgtatgaatttcacgattttgtgcgattttgat 259  Q
    |||||| |||| |||| | ||||||||||| |||||||| | | |||| |||||||||||||||||||||    
T  5554 acaaaagccttcaaaatcctttaaaatcctacaattttgaacggattttacgattttgtgcgattttgat 5623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0534 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0534
Description:

Target: scaffold0534; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 967 - 789
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat--caaaatcg------atggactttgccaaaac- 91  Q
    ||||||||| |||||||||||||||| |||| ||| ||||| ||||||||||  ||||||||||||   |||||||      ||||| ||| |||||||     
T  967 tcgtaaaattgcaatcaaaatcgaagaattttactcaactacttttgtagaacagatataagaaattgtaaaatcgcaatcaatggattttaccaaaaca 868  T
Q  92 aaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagtttaaagtccacaaaatacttatacataaatga 177  Q
    ||||  |||||||||       ||||||||||||||| |||| |||| || |||||||||| ||||||||||| ||| ||||||||    
T  867 aaaaaaaatgctaaa-------tataaattgtatatagtcattaatggcttagtttaaagttcacaaaatactcatagataaatga 789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 8738 - 8580
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat--------------caaaatcgatggactttgcc 86  Q
    ||||||||||||||||||||| ||||||||| ||| || || ||| |||||||||||||| |||||              ||||||||||||| ||| ||    
T  8738 tcgtaaaatcgcaatcaaaattgaaggattttactcaagtattttcgtagaatcgatataggaaattgtaaaatcgcaatcaaaatcgatggattttacc 8639  T
Q  87 aaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgactcagttta 148  Q
    |||| ||   |||| ||||||||||| ||||||| ||||||| |||||||||||| ||||||    
T  8638 aaaaaaa---taatactaaatatatggtataaatggtatatagtcataaatgacttagttta 8580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 93539 - 93603
Alignment:
Q  3 gtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatc 67  Q
    ||||||||| ||||||||||||||||||| | | ||||| ||||||||||||||||||| |||||    
T  93539 gtaaaatcgtaatcaaaatcgaaggattttattcaactacttttgtagaatcgatataataaatc 93603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 145885 - 145813
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaatcaaaatc 73  Q
    ||||||||| ||||||||||||||||||||| ||| |  || ||||||||||||||||||||| | |||||||    
T  145885 tcgtaaaatagcaatcaaaatcgaaggattttactcacttacttttgtagaatcgatataagatagcaaaatc 145813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 138
Target Start/End: Original strand, 76257 - 76308
Alignment:
Q  87 aaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatg 138  Q
    ||||||||| ||||| |||||||||||||||||||||||||| |||||||||    
T  76257 aaaacaaaaataatgataaatatatgttataaattgtatatagtcataaatg 76308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 56260 - 56322
Alignment:
Q  4 taaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    |||||||||||||||||||||||||||| ||| ||  | |||||||||||||||||| |||||    
T  56260 taaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatataggaaat 56322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0510 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0510
Description:

Target: scaffold0510; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 36 - 100
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    ||||||||||| || |||||||||||||||| ||| |||| | |||||||||||||||||||||||    
T  36 tcgtaaaatcgaaaccaaaatcgaaggattttactcaact-actttgtagaatcgatataagaaat 100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 33233 - 33173
Alignment:
Q  3 gtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataaga 63  Q
    |||||||||||||||||||||||| |||| ||| |  || |||||||||||||||||||||    
T  33233 gtaaaatcgcaatcaaaatcgaagaattttactcacttacttttgtagaatcgatataaga 33173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 18604 - 18537
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatc 131  Q
    ||||||||| |||||| | |  |||||||||| |||| ||||||||||||||||||||| ||||||||    
T  18604 aatcaaaatagatggattctatcaaaacaaaaataatactaaatatatgttataaattgcatataatc 18537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 177
Target Start/End: Complemental strand, 2957 - 2871
Alignment:
Q  92 aaaagtaatgctaaatatatgttataaattgtatataatcataaatga-ctcagtttaaagtccacaaaatacttatacataaatga 177  Q
    |||| |||||||||||||||||||||| ||| || || |||||||||| |  |||| |||||||| ||||||| | |||||||||||    
T  2957 aaaaataatgctaaatatatgttataatttgcatgtagtcataaatgatcaaagttcaaagtccataaaatacatgtacataaatga 2871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 259
Target Start/End: Complemental strand, 2564 - 2495
Alignment:
Q  190 acaaaatccttaaaaaccgtttaaaatcctgcaattttgtatgaatttcacgattttgtgcgattttgat 259  Q
    |||||| |||| |||| | |||||||||||  ||||||| | | |||| |||||||||||||||||||||    
T  2564 acaaaagccttcaaaatcctttaaaatcctataattttgaacggattttacgattttgtgcgattttgat 2495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 37057 - 37103
Alignment:
Q  123 tatataatcataaatgactcagtttaaagtccacaaaatacttatac 169  Q
    |||||| ||||||||||||| ||||||||| ||||||||||||||||    
T  37057 tatatagtcataaatgactccgtttaaagtacacaaaatacttatac 37103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 284
Target Start/End: Original strand, 37110 - 37203
Alignment:
Q  190 acaaaatccttaaaaaccgtttaaaatcctgcaattttgtatgaatttcacgattttgtgcgattttgatggacttttacaaggattttgcctat 284  Q
    ||||| ||||| |||||| ||||||||| |||| ||||| ||  |||||||||||||||| ||||||||||   |||||| |||||||| |||||    
T  37110 acaaagtccttcaaaaccctttaaaatcatgca-ttttgcatagatttcacgattttgtgtgattttgatgcgattttactaggattttacctat 37203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 259
Target Start/End: Complemental strand, 24348 - 24299
Alignment:
Q  210 ttaaaatcctgcaattttgtatgaatttcacgattttgtgcgattttgat 259  Q
    |||||||||||  |||||| ||| ||||||||||||||||||||||||||    
T  24348 ttaaaatcctgtgattttgaatggatttcacgattttgtgcgattttgat 24299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 14758 - 14814
Alignment:
Q  1 tcgtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgat 57  Q
    ||||||||||||||||||||||||||||||| | | ||  | |||||||||||||||    
T  14758 tcgtaaaatcgcaatcaaaatcgaaggattttattcaaagacttttgtagaatcgat 14814  T

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Target: scaffold0079; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 259
Target Start/End: Original strand, 15021 - 15068
Alignment:
Q  212 aaaatcctgcaattttgtatgaatttcacgattttgtgcgattttgat 259  Q
    |||||||||| |||||| ||| |||| |||||||||||||||||||||    
T  15021 aaaatcctgcgattttgaatggattttacgattttgtgcgattttgat 15068  T

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Target: scaffold0417 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 7289 - 7352
Alignment:
Q  3 gtaaaatcgcaatcaaaatcgaaggatttgacttaactaattttgtagaatcgatataagaaat 66  Q
    ||||||||| ||||||||||||||||||| ||| || || |||||| |||| |||||| |||||    
T  7289 gtaaaatcgtaatcaaaatcgaaggattttactcaagtacttttgttgaatagatataggaaat 7352  T

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Target: scaffold0526 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 141
Target Start/End: Complemental strand, 8363 - 8288
Alignment:
Q  64 aatcaaaatcgatggactttgccaaaacaaaagtaatgctaaatatatgttataaattgtatataatcataaatgact 141  Q
    |||||||||||| ||| | | ||||||||||  |||| |||||||||||| |||||||| ||||| ||||||||||||    
T  8363 aatcaaaatcga-ggattctaccaaaacaaatataatactaaatatatgt-ataaattgcatatagtcataaatgact 8288  T

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