View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11033_high_31 (Length: 253)
Name: NF11033_high_31
Description: NF11033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11033_high_31 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 6e-89; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 80 - 253
Target Start/End: Original strand, 17664155 - 17664328
Alignment:
| Q |
80 |
taagcgatgccatatttaacgtctcaaaatccatagcttctctctaaattataaaactatttccacatgtataaataaatactcatgaatcactttcaac |
179 |
Q |
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| T |
17664155 |
taagcgatgcgatatttaacgtctcaaaatccatagcttctctctaaattataaaactatttccacatgtataaataaatactcatgaatcactttcaac |
17664254 |
T |
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| Q |
180 |
ttttatttctttctcaattcctgaattcttatctttgcaacgttttgcacaatttttacaggttcctggaagtt |
253 |
Q |
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| T |
17664255 |
ttttatttctttctcaattcctgaattcttatctttgcaacgttttgcacaatttttacaggttcccggaagtt |
17664328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 154 - 253
Target Start/End: Original strand, 19246636 - 19246735
Alignment:
| Q |
154 |
ataaatactcatgaatcactttcaacttttatttctttctcaattcctgaattcttatctttgcaacgttttgcacaatttttacaggttcctggaagtt |
253 |
Q |
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| T |
19246636 |
ataaatactcatgaatcactttcaacttttatttctttctaaattcctgaattcttatctttgcaacgttttgcacaatttttacaggttcccggaagtt |
19246735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 19246560 - 19246637
Alignment:
| Q |
17 |
agaaattcaccatttaaagtgattttattttctatgtctttcgattgttcttgttaccctcattaagcgatgccatat |
94 |
Q |
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| T |
19246560 |
agaaattcaccatttaaagtgattttattttctatgtcttttgattggtcttgttaccctcattaagcgatgccatat |
19246637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 17664049 - 17664114
Alignment:
| Q |
17 |
agaaattcaccatttaaagtgattttattttctatgtctttcgattgttcttgttaccctcattaa |
82 |
Q |
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| T |
17664049 |
agaaattcaccatttaaagtgattttattttctatgtctttcgattggtcttgttaccctcattaa |
17664114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 245
Target Start/End: Complemental strand, 23332330 - 23332253
Alignment:
| Q |
164 |
atgaatcactttcaacttttatttctttctcaattcctgaattcttatctttgcaacgttttgcacaatttttacaggttcc |
245 |
Q |
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| T |
23332330 |
atgaatcactttcaacttttttttct----caatttctgtattcatatctttgcaactttttgcacaatttttacaggttcc |
23332253 |
T |
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