View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11033_high_39 (Length: 214)
Name: NF11033_high_39
Description: NF11033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11033_high_39 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 29967183 - 29967364
Alignment:
| Q |
18 |
gtaagcatacacgacctctcatctaatattgaccttttgaaaatagttttaagaatgacatttatcatttttaatagnnnnnnnnnnttatattaataag |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
29967183 |
gtaagcatacacgacctctcatctaatattgaccttttgaaaataattttaagaatgacatttattatttttaatagaaaaaaaaaattatattaataag |
29967282 |
T |
|
| Q |
118 |
tagtggtcggagtttgaacctctaatttttaatttattcattttaaggaattaaattttggtcactacactatttgattcat |
199 |
Q |
| |
|
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
29967283 |
tagcggtcggggtttgaacctctaatttttaatttattcattttaaggaattaaattttggtcactacactatttaattcat |
29967364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University