View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11033_high_4 (Length: 585)

Name: NF11033_high_4
Description: NF11033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11033_high_4
NF11033_high_4
[»] chr3 (10 HSPs)
chr3 (16-574)||(48394267-48394813)
chr3 (374-448)||(39623991-39624065)
chr3 (374-447)||(41665430-41665503)
chr3 (375-447)||(52044101-52044173)
chr3 (374-447)||(31604696-31604769)
chr3 (373-447)||(27481707-27481781)
chr3 (374-447)||(47667107-47667180)
chr3 (378-446)||(39918624-39918692)
chr3 (369-446)||(48402436-48402513)
chr3 (390-442)||(48413988-48414040)
[»] chr7 (7 HSPs)
chr7 (362-451)||(39796747-39796836)
chr7 (374-448)||(23260675-23260749)
chr7 (375-446)||(38538910-38538981)
chr7 (374-446)||(28040454-28040526)
chr7 (374-446)||(33171123-33171195)
chr7 (374-446)||(44206097-44206169)
chr7 (374-447)||(31516560-31516633)
[»] chr1 (9 HSPs)
chr1 (369-446)||(5757793-5757870)
chr1 (375-447)||(3820305-3820377)
chr1 (374-447)||(5031737-5031810)
chr1 (374-447)||(17983259-17983332)
chr1 (374-446)||(20607549-20607621)
chr1 (369-446)||(6073242-6073319)
chr1 (375-447)||(41985251-41985323)
chr1 (378-446)||(20610824-20610892)
chr1 (375-447)||(41987968-41988040)
[»] chr8 (6 HSPs)
chr8 (374-448)||(9944021-9944095)
chr8 (374-447)||(18364532-18364605)
chr8 (374-447)||(35929245-35929318)
chr8 (375-447)||(27547174-27547246)
chr8 (374-447)||(43731583-43731656)
chr8 (374-446)||(43748330-43748402)
[»] chr5 (4 HSPs)
chr5 (374-447)||(8880743-8880816)
chr5 (374-446)||(32684983-32685055)
chr5 (374-446)||(20190346-20190418)
chr5 (374-447)||(20200373-20200446)
[»] chr2 (4 HSPs)
chr2 (374-451)||(36047048-36047125)
chr2 (374-451)||(36048279-36048356)
chr2 (374-447)||(27282662-27282735)
chr2 (373-446)||(44206818-44206891)
[»] chr4 (1 HSPs)
chr4 (364-446)||(24267487-24267569)
[»] scaffold0012 (1 HSPs)
scaffold0012 (378-436)||(184936-184994)
[»] chr6 (1 HSPs)
chr6 (392-424)||(30899737-30899769)


Alignment Details
Target: chr3 (Bit Score: 416; Significance: 0; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 16 - 574
Target Start/End: Complemental strand, 48394813 - 48394267
Alignment:
Q  16 aatggaactctctgactcaacctctgttgaacctgcagagttttcactagagcttctgatacatagtttacgcggtagtttcacagaaaaaacaacgtta 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48394813 aatggaactctctgactcaacctctgttgaacctgcagagttttcactagagcttctgatacatagtttacgcggtagtttcacagaaaaaacaacgtta 48394714  T
Q  116 ttagttgagaatcctagtttgcttggaatgttgttgttactttgaatgcaaattgtagtggtggtgg---aggacaaggccattgctaagttttcattta 212  Q
    |||| ||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||    
T  48394713 ttagctgagaatcctagtttgcttggaatgttgtt---actttgaatgcaaattgtagtggtggtggtggaggacaaggccattgctaagttttcattta 48394617  T
Q  213 ttggagtattctgtttttgtttaatgtaacattatgaaatcaaacaataaacatgggtgagatattgcaacggatctttgccacaaatgtgttatctgca 312  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  48394616 ttggagtactctgtttttgtttaatgtaacattatgaaatcaaacaataaacatgggtgagataatgcaacggatctttgccacaaatgtgttatctgca 48394517  T
Q  313 agtagttcacatgaaagtttattatgtttaaataatatctgagagtttgtattaataaatcagtcgttgtagtatagtggtaagtattcccgcctgtcac 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||  |||| |||||||||||||||||||||||||||||||||||||||    
T  48394516 agtagttcacatgaaagtttattatgtttaaataatatctgagagtttaaattatcaaatgagtcgttgtagtatagtggtaagtattcccgcctgtcac 48394417  T
Q  413 gcgggtgacccgggttcgatccccggcaacggcg---tatttaagttcgctctcttttttggtgttttgatgttttcccttaagcgcgtttaccatagtt 509  Q
    ||||||||||||||||||||||||||||||||||   | |||| ||||||||||||||||||        |||||||||||||       ||||||||||    
T  48394416 gcgggtgacccgggttcgatccccggcaacggcgttttttttatgttcgctctcttttttgg--------tgttttcccttaa-------taccatagtt 48394332  T
Q  510 gttttctatcctttctgactctcgttattttatttgatttgacaaaagaatcaccaatccttcat 574  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  48394331 gttttctttcctttctgactctcgttattttattttatttgacaaaagaatcgccaatccttcat 48394267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 374 - 448
Target Start/End: Complemental strand, 39624065 - 39623991
Alignment:
Q  374 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgta 448  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39624065 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgta 39623991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 374 - 447
Target Start/End: Complemental strand, 41665503 - 41665430
Alignment:
Q  374 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 447  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41665503 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 41665430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 375 - 447
Target Start/End: Original strand, 52044101 - 52044173
Alignment:
Q  375 gtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 447  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52044101 gtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 52044173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 374 - 447
Target Start/End: Original strand, 31604696 - 31604769
Alignment:
Q  374 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 447  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31604696 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcgt 31604769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 373 - 447
Target Start/End: Complemental strand, 27481781 - 27481707
Alignment:
Q  373 cagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 447  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  27481781 cagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgatccgggttcgatccccggcagcggcgt 27481707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 374 - 447
Target Start/End: Complemental strand, 47667180 - 47667107
Alignment:
Q  374 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 447  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  47667180 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcaagtgacccgggttcgatccccggcaacggcgt 47667107  T

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Target: chr3; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 378 - 446
Target Start/End: Complemental strand, 39918692 - 39918624
Alignment:
Q  378 gttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 446  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  39918692 gttgtagtatagtggtaagtattcccgcctgtcacacgggtgacccgggttcgatccccggcaacggcg 39918624  T

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Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 369 - 446
Target Start/End: Complemental strand, 48402513 - 48402436
Alignment:
Q  369 aaatcagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 446  Q
    |||| ||| ||||||||||||||||||||||||||| ||||||||||||||||| | ||| |||||| ||||||||||    
T  48402513 aaataagttgttgtagtatagtggtaagtattcccgtctgtcacgcgggtgacctgagtttgatccctggcaacggcg 48402436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 390 - 442
Target Start/End: Complemental strand, 48414040 - 48413988
Alignment:
Q  390 tggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaac 442  Q
    |||||||||||||||| ||||||||||||||| |||||| |||||||| ||||    
T  48414040 tggtaagtattcccgcttgtcacgcgggtgactcgggtttgatccccgacaac 48413988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 362 - 451
Target Start/End: Complemental strand, 39796836 - 39796747
Alignment:
Q  362 tattaataaatcagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgtattt 451  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39796836 tattaacacatcagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgtattt 39796747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 374 - 448
Target Start/End: Original strand, 23260675 - 23260749
Alignment:
Q  374 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgta 448  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23260675 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgta 23260749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 375 - 446
Target Start/End: Original strand, 38538910 - 38538981
Alignment:
Q  375 gtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 446  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38538910 gtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 38538981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 374 - 446
Target Start/End: Complemental strand, 28040526 - 28040454
Alignment:
Q  374 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 446  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28040526 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 28040454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 374 - 446
Target Start/End: Original strand, 33171123 - 33171195
Alignment:
Q  374 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 446  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33171123 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 33171195  T

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Target: chr7; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 374 - 446
Target Start/End: Original strand, 44206097 - 44206169
Alignment:
Q  374 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 446  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  44206097 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 44206169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 374 - 447
Target Start/End: Original strand, 31516560 - 31516633
Alignment:
Q  374 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 447  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  31516560 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatcctcggcagcggcgt 31516633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 5e-36; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 369 - 446
Target Start/End: Original strand, 5757793 - 5757870
Alignment:
Q  369 aaatcagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 446  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5757793 aaatcagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 5757870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 375 - 447
Target Start/End: Complemental strand, 3820377 - 3820305
Alignment:
Q  375 gtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 447  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3820377 gtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 3820305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 374 - 447
Target Start/End: Original strand, 5031737 - 5031810
Alignment:
Q  374 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 447  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5031737 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcgt 5031810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 374 - 447
Target Start/End: Original strand, 17983259 - 17983332
Alignment:
Q  374 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 447  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  17983259 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcgt 17983332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 374 - 446
Target Start/End: Original strand, 20607549 - 20607621
Alignment:
Q  374 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 446  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  20607549 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 20607621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 369 - 446
Target Start/End: Complemental strand, 6073319 - 6073242
Alignment:
Q  369 aaatcagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 446  Q
    |||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  6073319 aaattagttgttgtagtatagtggtaagtattcccacctgtcacgcgggtgacccgggttcgatccccggcaacggcg 6073242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 375 - 447
Target Start/End: Original strand, 41985251 - 41985323
Alignment:
Q  375 gtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 447  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  41985251 gtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcaatccccggcagcggcgt 41985323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 378 - 446
Target Start/End: Original strand, 20610824 - 20610892
Alignment:
Q  378 gttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 446  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||    
T  20610824 gttgtagtatagtggtaagtattcccgcttgtcacccgggtgacccgggttcgatccccggcagcggcg 20610892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 375 - 447
Target Start/End: Original strand, 41987968 - 41988040
Alignment:
Q  375 gtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 447  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||| ||||||    
T  41987968 gtcgttgtagtatagtggtaagtattcccgcctgtcacccgggtgacccaggtttgatccccggcagcggcgt 41988040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 374 - 448
Target Start/End: Complemental strand, 9944095 - 9944021
Alignment:
Q  374 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgta 448  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9944095 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgta 9944021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 374 - 447
Target Start/End: Original strand, 18364532 - 18364605
Alignment:
Q  374 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 447  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18364532 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 18364605  T

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Target: chr8; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 374 - 447
Target Start/End: Original strand, 35929245 - 35929318
Alignment:
Q  374 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 447  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35929245 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 35929318  T

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Target: chr8; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 375 - 447
Target Start/End: Original strand, 27547174 - 27547246
Alignment:
Q  375 gtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 447  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27547174 gtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 27547246  T

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Target: chr8; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 374 - 447
Target Start/End: Complemental strand, 43731656 - 43731583
Alignment:
Q  374 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 447  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  43731656 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcgt 43731583  T

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Target: chr8; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 374 - 446
Target Start/End: Complemental strand, 43748402 - 43748330
Alignment:
Q  374 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 446  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43748402 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 43748330  T

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Target: chr5 (Bit Score: 74; Significance: 1e-33; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 374 - 447
Target Start/End: Original strand, 8880743 - 8880816
Alignment:
Q  374 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 447  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8880743 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 8880816  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 374 - 446
Target Start/End: Original strand, 32684983 - 32685055
Alignment:
Q  374 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 446  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  32684983 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 32685055  T

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Target: chr5; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 374 - 446
Target Start/End: Complemental strand, 20190418 - 20190346
Alignment:
Q  374 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 446  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  20190418 agtcgttgtagtatagtggtaagtattcccgcctgtcacgtgggtgacccgggttcgatccccggcagcggcg 20190346  T

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Target: chr5; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 374 - 447
Target Start/End: Complemental strand, 20200446 - 20200373
Alignment:
Q  374 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 447  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||| || ||||||    
T  20200446 agtcgttgtagtatagtggtaagtattcctgcctgtcatgcgggtgacccgggtttgatccccgacagcggcgt 20200373  T

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Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 374 - 451
Target Start/End: Original strand, 36047048 - 36047125
Alignment:
Q  374 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgtattt 451  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  36047048 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcgtattt 36047125  T

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Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 374 - 451
Target Start/End: Original strand, 36048279 - 36048356
Alignment:
Q  374 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgtattt 451  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  36048279 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcgtattt 36048356  T

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Target: chr2; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 374 - 447
Target Start/End: Complemental strand, 27282735 - 27282662
Alignment:
Q  374 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 447  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27282735 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcgt 27282662  T

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Target: chr2; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 373 - 446
Target Start/End: Original strand, 44206818 - 44206891
Alignment:
Q  373 cagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 446  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  44206818 cagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccggattcgatccccggcagcggcg 44206891  T

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Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 364 - 446
Target Start/End: Complemental strand, 24267569 - 24267487
Alignment:
Q  364 ttaataaatcagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 446  Q
    |||| |||| ||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||    
T  24267569 ttaacaaatgagtcgttgtagtatagtggtaagtatttccgcctgtcacgcggacgacccgggttcgatccccggcaacggcg 24267487  T

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Target: scaffold0012 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 436
Target Start/End: Original strand, 184936 - 184994
Alignment:
Q  378 gttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatcccc 436  Q
    ||||||||||||||||||||||| ||  |||||| |||||||| |||||||| ||||||    
T  184936 gttgtagtatagtggtaagtatttccatctgtcatgcgggtgatccgggttcaatcccc 184994  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 424
Target Start/End: Original strand, 30899737 - 30899769
Alignment:
Q  392 gtaagtattcccgcctgtcacgcgggtgacccg 424  Q
    |||||||||||||||||||||||||||||||||    
T  30899737 gtaagtattcccgcctgtcacgcgggtgacccg 30899769  T

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