View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11033_high_5 (Length: 569)
Name: NF11033_high_5
Description: NF11033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11033_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 523; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 1 - 555
Target Start/End: Complemental strand, 22269811 - 22269256
Alignment:
| Q |
1 |
ttggtttcattttgtgttttttaattcatgtaattttggaagaatgattttgagtgttgtgtnnnnnnnc-aatacaggaggaagattcagaagagtatg |
99 |
Q |
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| T |
22269811 |
ttggtttcattttgtgttttttaattcatgtaattttggaagaatgattttgagtgttgtgtaaaaaaaataatacaggaggaagattcagaagagtatg |
22269712 |
T |
|
| Q |
100 |
gaagtccggtggtttcggcatctactattgctgacattataaagtctcgaaccgaagcacttttgaagataaccaaaacagcagtttctcctaagccaat |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22269711 |
gaagtccggtggtttcggcatctactattgctgacattataaagtctcgaaccgaagcacttttgaagataaccaaaacagcagtttctcctaagccaat |
22269612 |
T |
|
| Q |
200 |
tgtgctcaaagctgaatacgcacactgtccaaatcttaccattattgacacaccggggtttgttctcaaggtatttgttgtaatgcttgaatgataagtg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22269611 |
tgtgctcaaagctgaatacgcacactgtccaaatcttaccattattgacacaccggggtttgttctcaaggtatttgttgtaatgcttgaatgataagtg |
22269512 |
T |
|
| Q |
300 |
attcgactgatggtatgtttaattggaaatttgtgtgagatctgattgttttgtatggtaggcgaagaagggtgaaccggagaacacgcctgatgagatt |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22269511 |
attcgactgatggtatgtttaattggaaatttgtgtgagatctgattgttttgtatggtaggcgaagaagggtgaaccggagaacacgcctgatgagatt |
22269412 |
T |
|
| Q |
400 |
ctttccatggtgaagacattggctactcctccacaccgtatactcttgttccttcagcaaagtagtgtggaatggtgctcctctttgtggttggactcta |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22269411 |
ctttccatggtgaagacattggctactcctccacaccgtatactcttgttccttcagcaaagtagtgtggaatggtgctcctctttgtggttggactcta |
22269312 |
T |
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| Q |
500 |
ttcgtgaaattgatcccacgtttagacggacaatcattgttgtctccaaatttgat |
555 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22269311 |
ttcgtgaaattgatcccacgtttagacggacaatcattgttgtctccaaatttgat |
22269256 |
T |
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