View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11033_high_9 (Length: 450)

Name: NF11033_high_9
Description: NF11033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11033_high_9
NF11033_high_9
[»] chr1 (29 HSPs)
chr1 (205-369)||(52271823-52271987)
chr1 (13-195)||(52270994-52271184)
chr1 (96-195)||(26854160-26854259)
chr1 (95-195)||(11769833-11769933)
chr1 (100-195)||(19257650-19257743)
chr1 (121-195)||(25494354-25494428)
chr1 (95-187)||(25665609-25665701)
chr1 (114-193)||(30675662-30675740)
chr1 (372-434)||(52276305-52276367)
chr1 (100-160)||(25126690-25126750)
chr1 (114-197)||(50047348-50047431)
chr1 (95-161)||(23505965-23506031)
chr1 (130-195)||(9328343-9328407)
chr1 (114-179)||(18300861-18300926)
chr1 (95-179)||(23519608-23519692)
chr1 (95-195)||(26102232-26102332)
chr1 (114-180)||(12423773-12423839)
chr1 (97-195)||(21548823-21548921)
chr1 (114-180)||(26657666-26657732)
chr1 (135-195)||(25727788-25727848)
chr1 (135-195)||(25736196-25736256)
chr1 (116-195)||(15298731-15298809)
chr1 (114-160)||(23223624-23223670)
chr1 (130-195)||(9353188-9353252)
chr1 (119-180)||(30781950-30782011)
chr1 (130-170)||(9252484-9252524)
chr1 (124-179)||(25373937-25373992)
chr1 (95-193)||(15850868-15850965)
chr1 (116-193)||(15846929-15847005)
[»] chr3 (21 HSPs)
chr3 (87-191)||(18474349-18474453)
chr3 (98-191)||(19542966-19543059)
chr3 (116-195)||(19219071-19219150)
chr3 (95-191)||(10341966-10342062)
chr3 (95-195)||(23908110-23908210)
chr3 (114-180)||(25883293-25883359)
chr3 (95-178)||(11475039-11475127)
chr3 (108-171)||(5632395-5632458)
chr3 (137-195)||(28422628-28422685)
chr3 (97-166)||(8402392-8402461)
chr3 (124-195)||(19263772-19263846)
chr3 (95-170)||(11521365-11521440)
chr3 (114-160)||(18066007-18066053)
chr3 (114-171)||(1475138-1475195)
chr3 (95-171)||(27415367-27415442)
chr3 (104-195)||(21828981-21829072)
chr3 (124-170)||(12573490-12573536)
chr3 (124-170)||(13549954-13550000)
chr3 (146-191)||(19285277-19285322)
chr3 (111-160)||(21018087-21018136)
chr3 (128-200)||(30493137-30493209)
[»] scaffold0011 (1 HSPs)
scaffold0011 (87-179)||(228018-228110)
[»] chr4 (26 HSPs)
chr4 (95-195)||(31859740-31859840)
chr4 (100-195)||(17187348-17187443)
chr4 (95-195)||(33519205-33519305)
chr4 (97-200)||(21077403-21077506)
chr4 (87-189)||(13064607-13064709)
chr4 (107-170)||(23353818-23353881)
chr4 (95-171)||(4732955-4733031)
chr4 (120-178)||(5906627-5906685)
chr4 (96-178)||(17026537-17026619)
chr4 (95-179)||(15192394-15192478)
chr4 (95-195)||(22119796-22119895)
chr4 (95-181)||(20985232-20985318)
chr4 (95-157)||(29437674-29437736)
chr4 (114-171)||(1695705-1695762)
chr4 (127-180)||(34864167-34864220)
chr4 (124-180)||(12111196-12111252)
chr4 (95-179)||(19601989-19602073)
chr4 (95-195)||(26159931-26160029)
chr4 (95-171)||(27302976-27303052)
chr4 (114-194)||(47024624-47024703)
chr4 (96-171)||(5676399-5676474)
chr4 (114-197)||(18898156-18898238)
chr4 (114-170)||(10320079-10320135)
chr4 (96-146)||(18444454-18444504)
chr4 (95-195)||(7024058-7024158)
chr4 (119-159)||(51884813-51884853)
[»] chr6 (13 HSPs)
chr6 (95-195)||(26499686-26499786)
chr6 (96-195)||(30355492-30355591)
chr6 (114-179)||(17860307-17860372)
chr6 (114-180)||(15575114-15575180)
chr6 (87-195)||(14768107-14768215)
chr6 (131-195)||(33638261-33638325)
chr6 (132-195)||(33638381-33638444)
chr6 (97-195)||(12972226-12972324)
chr6 (95-195)||(14924259-14924357)
chr6 (114-171)||(15998709-15998766)
chr6 (115-179)||(24507302-24507366)
chr6 (98-153)||(17198664-17198719)
chr6 (129-193)||(23418983-23419047)
[»] chr2 (17 HSPs)
chr2 (97-178)||(18818894-18818975)
chr2 (95-195)||(14921878-14921978)
chr2 (95-194)||(17415003-17415101)
chr2 (95-179)||(27417102-27417186)
chr2 (95-195)||(34063680-34063780)
chr2 (97-195)||(18236144-18236242)
chr2 (115-180)||(22525679-22525744)
chr2 (114-180)||(16593609-16593675)
chr2 (119-179)||(21505002-21505062)
chr2 (87-171)||(24188168-24188252)
chr2 (107-195)||(1732726-1732814)
chr2 (124-180)||(30998961-30999017)
chr2 (125-180)||(25474227-25474282)
chr2 (128-198)||(31274128-31274198)
chr2 (126-195)||(31262172-31262241)
chr2 (104-195)||(19541212-19541302)
chr2 (132-168)||(32619827-32619863)
[»] scaffold0190 (1 HSPs)
scaffold0190 (101-193)||(11544-11635)
[»] chr8 (24 HSPs)
chr8 (95-195)||(29291945-29292045)
chr8 (87-195)||(32239463-32239571)
chr8 (96-195)||(11437595-11437694)
chr8 (95-195)||(13583355-13583459)
chr8 (97-195)||(30543936-30544035)
chr8 (96-195)||(27097642-27097739)
chr8 (96-195)||(28901190-28901288)
chr8 (105-195)||(28291950-28292040)
chr8 (96-192)||(14424653-14424749)
chr8 (97-165)||(31436675-31436742)
chr8 (96-171)||(16052117-16052192)
chr8 (97-195)||(5153933-5154031)
chr8 (105-195)||(30850949-30851039)
chr8 (95-180)||(11310096-11310180)
chr8 (114-183)||(22894390-22894459)
chr8 (114-180)||(16054484-16054550)
chr8 (114-179)||(28902280-28902345)
chr8 (124-180)||(13081803-13081859)
chr8 (95-171)||(24120423-24120499)
chr8 (115-153)||(12357696-12357734)
chr8 (115-153)||(12358824-12358862)
chr8 (124-179)||(5570008-5570063)
chr8 (124-195)||(6888061-6888132)
chr8 (136-180)||(28859119-28859163)
[»] chr7 (22 HSPs)
chr7 (95-195)||(29544695-29544795)
chr7 (97-191)||(24596845-24596939)
chr7 (95-180)||(8308875-8308960)
chr7 (124-195)||(21545695-21545766)
chr7 (87-184)||(4828975-4829071)
chr7 (114-195)||(20017129-20017209)
chr7 (119-195)||(23125076-23125152)
chr7 (115-195)||(30405769-30405849)
chr7 (87-195)||(18496740-18496848)
chr7 (124-193)||(20470678-20470747)
chr7 (95-195)||(7494872-7494971)
chr7 (114-188)||(22067661-22067735)
chr7 (95-168)||(7815525-7815598)
chr7 (95-159)||(315384-315448)
chr7 (95-179)||(1074644-1074728)
chr7 (96-161)||(3487208-3487271)
chr7 (87-160)||(4977653-4977725)
chr7 (114-195)||(9801733-9801813)
chr7 (124-180)||(10670443-10670499)
chr7 (148-195)||(12358655-12358702)
chr7 (96-155)||(20461486-20461545)
chr7 (127-180)||(20446392-20446445)
[»] chr5 (22 HSPs)
chr5 (85-197)||(22643734-22643846)
chr5 (95-193)||(19763725-19763823)
chr5 (95-195)||(26329909-26330008)
chr5 (95-191)||(23157643-23157739)
chr5 (124-200)||(7742738-7742814)
chr5 (114-195)||(17027703-17027783)
chr5 (95-195)||(16622516-16622615)
chr5 (124-195)||(18452680-18452751)
chr5 (124-195)||(30072291-30072362)
chr5 (114-195)||(11274188-11274269)
chr5 (95-195)||(18178277-18178376)
chr5 (127-195)||(19331685-19331753)
chr5 (125-180)||(24841943-24841998)
chr5 (121-192)||(25367772-25367842)
chr5 (96-195)||(25594533-25594631)
chr5 (116-170)||(18872912-18872966)
chr5 (97-195)||(26070649-26070747)
chr5 (124-179)||(16634238-16634293)
chr5 (125-171)||(25680786-25680832)
chr5 (95-180)||(17695302-17695387)
chr5 (140-188)||(12339899-12339947)
chr5 (147-191)||(20694819-20694863)
[»] scaffold1149 (1 HSPs)
scaffold1149 (87-179)||(1978-2070)
[»] scaffold0650 (1 HSPs)
scaffold0650 (124-195)||(5638-5708)
[»] scaffold0188 (1 HSPs)
scaffold0188 (124-195)||(26823-26894)
[»] scaffold0171 (2 HSPs)
scaffold0171 (124-195)||(21573-21644)
scaffold0171 (114-179)||(6386-6451)
[»] scaffold0282 (1 HSPs)
scaffold0282 (95-180)||(22453-22538)
[»] scaffold0362 (1 HSPs)
scaffold0362 (97-179)||(7810-7892)
[»] scaffold0337 (1 HSPs)
scaffold0337 (115-179)||(1999-2063)
[»] scaffold0185 (1 HSPs)
scaffold0185 (116-180)||(2690-2754)
[»] scaffold0065 (1 HSPs)
scaffold0065 (115-179)||(12435-12499)
[»] scaffold1026 (1 HSPs)
scaffold1026 (127-161)||(1701-1735)
[»] scaffold0836 (1 HSPs)
scaffold0836 (127-161)||(2817-2851)
[»] scaffold0386 (2 HSPs)
scaffold0386 (95-171)||(8548-8624)
scaffold0386 (95-171)||(11638-11714)


Alignment Details
Target: chr1 (Bit Score: 161; Significance: 1e-85; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 205 - 369
Target Start/End: Original strand, 52271823 - 52271987
Alignment:
Q  205 tacaggaaacaaatagatgatttattaattcctctcagtcatgccacacaaagcacatgatgtcgtcaaatcaggaattacccttcttttaaagaggttc 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  52271823 tacaggaaacaaatagatgatttattaattcctctcagtcatgccacacaaagcacatgatgtcgtcaaatcagcaattacccttcttttaaagaggttc 52271922  T
Q  305 tctcaggtaggaatcctatctagaaggagtttctaggaaatgttaataacctttcgggcagccca 369  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52271923 tctcaggtaggaatcctatctagaaggagtttctaggaaatgttaataacctttcgggcagccca 52271987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 13 - 195
Target Start/End: Original strand, 52270994 - 52271184
Alignment:
Q  13 gcatagggcagtagctattagcgctcatgcgcaggggcgcataaggcaacccctcttgcacgaattcaaca--------cccttttcgcccgttcttccg 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||    
T  52270994 gcatagggcagtagctattagcgctcatgcgcaggggcgcataaggcaacccctcttgcacgaattcaacagtttttgacccttttcgcccgttcttccg 52271093  T
Q  105 tcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcata 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  52271094 tcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaacttcaatcttcata 52271184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 96 - 195
Target Start/End: Original strand, 26854160 - 26854259
Alignment:
Q  96 gttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcata 195  Q
    |||||||| ||||||||| |||||||| || |||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||    
T  26854160 gttcttccatcttgcaatgccttggaacttcaaatgaattttcttcactttgtattgtcttcaaatatcttctaagaaccattgaacttcaatcttcata 26854259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 95 - 195
Target Start/End: Original strand, 11769833 - 11769933
Alignment:
Q  95 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcat 194  Q
    ||||||||||||| | || || | |||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||   ||||||||||||    
T  11769833 cgttcttccgtctggaaactcataggaacttgaaatgaattttcttcactttgtattgtcttcaaaaaccttctaagaaccattggtcttcaatcttcat 11769932  T
Q  195 a 195  Q
    |    
T  11769933 a 11769933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 100 - 195
Target Start/End: Original strand, 19257650 - 19257743
Alignment:
Q  100 ttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcata 195  Q
    |||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||| ||  ||||  |||||||||||||    
T  19257650 ttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac--ttgatgttcaatcttcata 19257743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 121 - 195
Target Start/End: Original strand, 25494354 - 25494428
Alignment:
Q  121 aatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcata 195  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||   |||||||||||||    
T  25494354 aatttgaaatgaattttcttcactttgtattgtcttcaaaaaccttctaagaaccattggtcttcaatcttcata 25494428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 95 - 187
Target Start/End: Original strand, 25665609 - 25665701
Alignment:
Q  95 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaa 187  Q
    ||||||||||||||||||| |||||||| || |||||| ||||||||||||||||||||||| |||||  || |||| ||||||||| |||||    
T  25665609 cgttcttccgtcttgcaatgccttggaacttcaaatgatttttcttcactttgtattgtctttaaatattttataagaaccattgaacttcaa 25665701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 114 - 193
Target Start/End: Complemental strand, 30675740 - 30675662
Alignment:
Q  114 tccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttca 193  Q
    |||| |||| |||||||||||||||||||||||||||| |||||||| |||||||||| ||||||| |||||||||||||    
T  30675740 tcctaggaacttgaaatgaattttcttcactttgtattatcttcaaaaaccttctaagaaccattg-atttcaatcttca 30675662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 372 - 434
Target Start/End: Original strand, 52276305 - 52276367
Alignment:
Q  372 acttccatatcttagcgaggattgagatcctttcagatgtgtcttcctccctacccacccctt 434  Q
    ||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  52276305 acttccataccttagagaggattgagatcctttcaaatgtgtcttcctccctacccacccctt 52276367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 25126750 - 25126690
Alignment:
Q  100 ttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaa 160  Q
    |||||||||||||| |||||||| ||||||||||||||||||| |||||||||| ||||||    
T  25126750 ttccgtcttgcaatgccttggaacttgaaatgaattttcttcattttgtattgtattcaaa 25126690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 50047431 - 50047348
Alignment:
Q  114 tccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcatacc 197  Q
    |||| |||| || |||||||||||||||| ||||||||||||||||  ||||| |||||||||||||  |||||| ||||||||    
T  50047431 tcctaggaacttaaaatgaattttcttcattttgtattgtcttcaataaccttttaagtaccattgatcttcaatattcatacc 50047348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 95 - 161
Target Start/End: Complemental strand, 23506031 - 23505965
Alignment:
Q  95 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaat 161  Q
    |||| ||| |||||||| |  ||||||| ||||||||||||||||||||||||||||||||||||||    
T  23506031 cgttattctgtcttgcattgtcttggaacttgaaatgaattttcttcactttgtattgtcttcaaat 23505965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 130 - 195
Target Start/End: Complemental strand, 9328407 - 9328343
Alignment:
Q  130 tgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcata 195  Q
    |||||||||||||||| |||||||||||||| |||||||||| || |||||| |||||||||||||    
T  9328407 tgaattttcttcacttagtattgtcttcaaaaaccttctaagaacgattgaa-ttcaatcttcata 9328343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 114 - 179
Target Start/End: Original strand, 18300861 - 18300926
Alignment:
Q  114 tccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattg 179  Q
    |||| |||||||||||| | ||||||||||| ||||||||||||||| |||||||||| |||||||    
T  18300861 tcctaggaatttgaaataatttttcttcactctgtattgtcttcaaaaaccttctaagaaccattg 18300926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 95 - 179
Target Start/End: Original strand, 23519608 - 23519692
Alignment:
Q  95 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattg 179  Q
    |||||||||||||   || |||| |||| ||||||| ||||||||||||||| ||||||||||||  |||||||||| |||||||    
T  23519608 cgttcttccgtctgaaaactcctaggaacttgaaataaattttcttcactttctattgtcttcaacaaccttctaagaaccattg 23519692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 95 - 195
Target Start/End: Complemental strand, 26102332 - 26102232
Alignment:
Q  95 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcat 194  Q
    |||||||| |||||| ||||||||| || |||| |||||||||| |||  |||||||||||||||| |||||||||  | ||||||  |||| |||||||    
T  26102332 cgttcttcagtcttgaaattccttgaaacttgagatgaattttcctcaacttgtattgtcttcaaaaaccttctaaaaatcattgatcttcattcttcat 26102233  T
Q  195 a 195  Q
    |    
T  26102232 a 26102232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 12423773 - 12423839
Alignment:
Q  114 tccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattga 180  Q
    |||| |||| ||||||||||||| ||||||||||||||||||||||  |||||||||| ||| ||||    
T  12423773 tcctaggaacttgaaatgaatttccttcactttgtattgtcttcaacaaccttctaagaacctttga 12423839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 97 - 195
Target Start/End: Complemental strand, 21548921 - 21548823
Alignment:
Q  97 ttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcata 195  Q
    ||||| ||||||| ||| |||||||| || ||||||||||| ||||  ||||||| |||||||||  |||||||| |||||| |  |||||||||||||    
T  21548921 ttctttcgtcttgtaatgccttggaacttcaaatgaatttttttcaacttgtattatcttcaaatgtcttctaagaaccatttagcttcaatcttcata 21548823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 114 - 180
Target Start/End: Complemental strand, 26657732 - 26657666
Alignment:
Q  114 tccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattga 180  Q
    |||| |||| ||||||||||||||||||||||||| ||||||||||| ||||| |||| || |||||    
T  26657732 tcctaggaacttgaaatgaattttcttcactttgttttgtcttcaaaaaccttataagaactattga 26657666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 195
Target Start/End: Original strand, 25727788 - 25727848
Alignment:
Q  135 tttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcata 195  Q
    ||||||||||||| |||||||||||| |||||| ||| ||||||||  |||||||||||||    
T  25727788 tttcttcactttggattgtcttcaaaaaccttccaagaaccattgatcttcaatcttcata 25727848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 195
Target Start/End: Original strand, 25736196 - 25736256
Alignment:
Q  135 tttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcata 195  Q
    ||||||||||||| |||||||||||| |||||| ||| ||||||||  |||||||||||||    
T  25736196 tttcttcactttggattgtcttcaaaaaccttccaagaaccattgatcttcaatcttcata 25736256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 116 - 195
Target Start/End: Original strand, 15298731 - 15298809
Alignment:
Q  116 cttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcata 195  Q
    ||||||| |||||||||||||| ||||| |||||||| ||||||||| ||| |||| ||||||||  || ||||||||||    
T  15298731 cttggaacttgaaatgaattttattcacattgtattg-cttcaaataacttttaagaaccattgatcttgaatcttcata 15298809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 160
Target Start/End: Complemental strand, 23223670 - 23223624
Alignment:
Q  114 tccttggaatttgaaatgaattttcttcactttgtattgtcttcaaa 160  Q
    |||| |||| |||||||||||||| ||||||||||||||||||||||    
T  23223670 tcctaggaacttgaaatgaatttttttcactttgtattgtcttcaaa 23223624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 130 - 195
Target Start/End: Complemental strand, 9353252 - 9353188
Alignment:
Q  130 tgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcata 195  Q
    |||||||||||||||| ||||| |||||||| |||||||||| |  |||||| |||||||||||||    
T  9353252 tgaattttcttcacttagtattttcttcaaaaaccttctaagaatgattgaa-ttcaatcttcata 9353188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 119 - 180
Target Start/End: Complemental strand, 30782011 - 30781950
Alignment:
Q  119 ggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattga 180  Q
    |||| ||||||| ||||||||||||||||||||||||||||  ||||| |||| ||| ||||    
T  30782011 ggaacttgaaatcaattttcttcactttgtattgtcttcaacaaccttttaagaacccttga 30781950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 130 - 170
Target Start/End: Original strand, 9252484 - 9252524
Alignment:
Q  130 tgaattttcttcactttgtattgtcttcaaataccttctaa 170  Q
    |||||||||||||||| |||||||||||||| |||||||||    
T  9252484 tgaattttcttcacttagtattgtcttcaaaaaccttctaa 9252524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 25373992 - 25373937
Alignment:
Q  124 ttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattg 179  Q
    |||||||||||||||||||  |||||||||||| ||  |||||||||| |||||||    
T  25373992 ttgaaatgaattttcttcatcttgtattgtcttaaacaaccttctaagaaccattg 25373937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 193
Target Start/End: Original strand, 15850868 - 15850965
Alignment:
Q  95 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttca 193  Q
    ||||||||| ||||  ||| ||||| ||||||  |||||||||||  |  |||||||||||||||| ||||||| ||||| |||||| |||| ||||||    
T  15850868 cgttcttccttcttaaaatgccttgaaatttgggatgaattttctcaaacttgtattgtcttcaaa-accttcttagtacaattgaaattcattcttca 15850965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 193
Target Start/End: Original strand, 15846929 - 15847005
Alignment:
Q  116 cttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttca 193  Q
    |||| ||||||  |||||||||||  | ||||||||||||||||| ||||||| ||||| |||||| |||| ||||||    
T  15846929 cttgaaatttgggatgaattttctcaaatttgtattgtcttcaaa-accttctcagtacaattgaaattcattcttca 15847005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 6e-38; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 87 - 191
Target Start/End: Complemental strand, 18474453 - 18474349
Alignment:
Q  87 ttttcgcccgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttca 186  Q
    ||||||| ||||||| ||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18474453 ttttcgctcgttctttcgtcttgcaatgcattggaacttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaaattca 18474354  T
Q  187 atctt 191  Q
    |||||    
T  18474353 atctt 18474349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 98 - 191
Target Start/End: Original strand, 19542966 - 19543059
Alignment:
Q  98 tcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatctt 191  Q
    |||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||    
T  19542966 tctttcgtcttgcaatgccttggaacttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagaactattgaaattcaatctt 19543059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 116 - 195
Target Start/End: Original strand, 19219071 - 19219150
Alignment:
Q  116 cttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcata 195  Q
    |||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||  |||||||||||||    
T  19219071 cttggaatttgaaatgaattttattcactttgtattgtcttcaaaaaccttctaagaaccattgatcttcaatcttcata 19219150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 95 - 191
Target Start/End: Complemental strand, 10342062 - 10341966
Alignment:
Q  95 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatctt 191  Q
    ||||||||||||| | || |||| |||| ||||||||| ||||  ||||||||||||||||||||| |||||||||| |||| |||  |||||||||    
T  10342062 cgttcttccgtctagaaactcctaggaacttgaaatgagtttttctcactttgtattgtcttcaaaaaccttctaagaaccactgatcttcaatctt 10341966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 95 - 195
Target Start/End: Original strand, 23908110 - 23908210
Alignment:
Q  95 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcat 194  Q
    ||||||||| | ||| |||||||||||||||| |||||||||||  || ||||||||||||||||| || ||||||  ||||||||  || |||||||||    
T  23908110 cgttcttcctttttgaaattccttggaatttggaatgaattttccccaatttgtattgtcttcaaaaactttctaaaaaccattgatcttaaatcttcat 23908209  T
Q  195 a 195  Q
    |    
T  23908210 a 23908210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 114 - 180
Target Start/End: Complemental strand, 25883359 - 25883293
Alignment:
Q  114 tccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattga 180  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||  |||||||||| ||| ||||    
T  25883359 tcctaggaacttgaaatgaattttcttcactttgtattgtcttcaacaaccttctaagaacccttga 25883293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 95 - 178
Target Start/End: Complemental strand, 11475127 - 11475039
Alignment:
Q  95 cgttcttccgtcttgcaattccttggaatttgaaatgaattttctt-----cactttgtattgtcttcaaataccttctaagtaccatt 178  Q
    ||||||||||||||||||  |||||||| ||||||||| |||| ||     |||||||||||||||||||||| |||||||| ||||||    
T  11475127 cgttcttccgtcttgcaacgccttggaacttgaaatgatttttttttttttcactttgtattgtcttcaaatatcttctaagaaccatt 11475039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 108 - 171
Target Start/End: Original strand, 5632395 - 5632458
Alignment:
Q  108 tgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaag 171  Q
    |||||| |||||||| ||||||||||||||||||| ||| |||| |||||||||||||| ||||    
T  5632395 tgcaatgccttggaacttgaaatgaattttcttcaatttttattatcttcaaataccttataag 5632458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 137 - 195
Target Start/End: Complemental strand, 28422685 - 28422628
Alignment:
Q  137 tcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcata 195  Q
    ||||||||||||||||||||||||||||||||||  | ||||||| |||||||||||||    
T  28422685 tcttcactttgtattgtcttcaaataccttctaa-catcattgaacttcaatcttcata 28422628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 97 - 166
Target Start/End: Original strand, 8402392 - 8402461
Alignment:
Q  97 ttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaatacctt 166  Q
    ||||||| |||||||||  | ||||| ||||||||||| ||||||||||| |||| ||||||||||||||    
T  8402392 ttcttccatcttgcaatgtcatggaacttgaaatgaatgttcttcactttatattttcttcaaatacctt 8402461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 124 - 195
Target Start/End: Original strand, 19263772 - 19263846
Alignment:
Q  124 ttgaaatgaattttcttcactttgtattgtctt---caaataccttctaagtaccattgaatttcaatcttcata 195  Q
    |||||||||||||||||||||||||||||||||    ||| |||||||| | ||||||||  |||||||||||||    
T  19263772 ttgaaatgaattttcttcactttgtattgtcttaaaaaaaaaccttctatgaaccattgatcttcaatcttcata 19263846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 95 - 170
Target Start/End: Complemental strand, 11521440 - 11521365
Alignment:
Q  95 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaa 170  Q
    |||||||||||||   || |||| |||| |||||||||||||||||| ||||||||| |||||||  |||||||||    
T  11521440 cgttcttccgtctgaaaactcctaggaacttgaaatgaattttcttcgctttgtattatcttcaacaaccttctaa 11521365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 160
Target Start/End: Complemental strand, 18066053 - 18066007
Alignment:
Q  114 tccttggaatttgaaatgaattttcttcactttgtattgtcttcaaa 160  Q
    |||| |||| |||||||||||||||||||||||||||| ||||||||    
T  18066053 tcctaggaagttgaaatgaattttcttcactttgtattttcttcaaa 18066007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 114 - 171
Target Start/End: Original strand, 1475138 - 1475195
Alignment:
Q  114 tccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaag 171  Q
    |||| |||| ||||||| |||||||||||||||||||| |||||||  ||||||||||    
T  1475138 tcctaggaacttgaaataaattttcttcactttgtattatcttcaataaccttctaag 1475195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 95 - 171
Target Start/End: Complemental strand, 27415442 - 27415367
Alignment:
Q  95 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaag 171  Q
    ||||||| ||||||| || |||| |||| ||||||||||||||||||||||| || ||||| |||| || |||||||    
T  27415442 cgttctttcgtcttgaaactcctaggaagttgaaatgaattttcttcacttttta-tgtctccaaaaacattctaag 27415367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 195
Target Start/End: Original strand, 21828981 - 21829072
Alignment:
Q  104 gtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcata 195  Q
    |||||| ||| |||||||| || |||||||| ||||| |  || ||||||||||||| |||||| | | ||||||||  |||||||||||||    
T  21828981 gtcttgaaatgccttggaacttaaaatgaatattctttaacttatattgtcttcaaagaccttcgatgaaccattgatcttcaatcttcata 21829072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 170
Target Start/End: Complemental strand, 12573536 - 12573490
Alignment:
Q  124 ttgaaatgaattttcttcactttgtattgtcttcaaataccttctaa 170  Q
    ||||||| ||||||||||||| ||||||||||||||  |||||||||    
T  12573536 ttgaaataaattttcttcactgtgtattgtcttcaacaaccttctaa 12573490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 170
Target Start/End: Complemental strand, 13550000 - 13549954
Alignment:
Q  124 ttgaaatgaattttcttcactttgtattgtcttcaaataccttctaa 170  Q
    ||||||| ||||||||||||| ||||||||||||||  |||||||||    
T  13550000 ttgaaataaattttcttcactgtgtattgtcttcaacaaccttctaa 13549954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 191
Target Start/End: Complemental strand, 19285322 - 19285277
Alignment:
Q  146 tgtattgtcttcaaataccttctaagtaccattgaatttcaatctt 191  Q
    |||||||||||||||||||||| ||| |||||||| | ||||||||    
T  19285322 tgtattgtcttcaaataccttccaagaaccattgattatcaatctt 19285277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 160
Target Start/End: Complemental strand, 21018136 - 21018087
Alignment:
Q  111 aattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaa 160  Q
    ||||||| |||| ||||||||||||| ||||| |||||||| ||||||||    
T  21018136 aattcctaggaacttgaaatgaatttccttcattttgtattatcttcaaa 21018087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 200
Target Start/End: Original strand, 30493137 - 30493209
Alignment:
Q  128 aatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcataccttc 200  Q
    ||||||||||||||||||| ||| ||||||||||  |||||||| ||| || |  || |||||||||| ||||    
T  30493137 aatgaattttcttcactttatatcgtcttcaaatgtcttctaagaaccgttaatctttaatcttcatatcttc 30493209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 87 - 179
Target Start/End: Original strand, 228018 - 228110
Alignment:
Q  87 ttttcgcccgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattg 179  Q
    ||||| |||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  228018 ttttcacccgttcttccgtcttgcaatgtcttggaacttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagaaccattg 228110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 8e-31; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 95 - 195
Target Start/End: Original strand, 31859740 - 31859840
Alignment:
Q  95 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcat 194  Q
    ||||||||||||||| ||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||  |||||| |||||    
T  31859740 cgttcttccgtcttgaaatgccttggaacttgaaataaattttcttcactttgtattgtcttcaaataccttctaagaaccattgatcttcaatattcat 31859839  T
Q  195 a 195  Q
    |    
T  31859840 a 31859840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 100 - 195
Target Start/End: Complemental strand, 17187443 - 17187348
Alignment:
Q  100 ttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcata 195  Q
    ||||||||||||||  |||| || ||||||||||||||||| ||||||||||||||||||||| |||||||| |||| |||| |||||||||||||    
T  17187443 ttccgtcttgcaatgtcttgaaacttgaaatgaattttctttactttgtattgtcttcaaataacttctaagaaccactgaacttcaatcttcata 17187348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 95 - 195
Target Start/End: Complemental strand, 33519305 - 33519205
Alignment:
Q  95 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcat 194  Q
    |||||||| |||| | ||| ||||||||||||||||||||||||||||  |||||||||||||||| |||||||||| || |||||  ||||||| ||||    
T  33519305 cgttcttctgtctggaaatgccttggaatttgaaatgaattttcttcaacttgtattgtcttcaaagaccttctaagaacgattgatcttcaatcgtcat 33519206  T
Q  195 a 195  Q
    |    
T  33519205 a 33519205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 97 - 200
Target Start/End: Complemental strand, 21077506 - 21077403
Alignment:
Q  97 ttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcatac 196  Q
    ||||||| |||| |||| |||||||| |||||||||||||| |||| |||||||||||||| | ||||||||||| ||||||||  ||||||| |||||     
T  21077506 ttcttccatctttcaatgccttggaacttgaaatgaattttattcaatttgtattgtcttcgattaccttctaagaaccattgatattcaatcctcataa 21077407  T
Q  197 cttc 200  Q
    ||||    
T  21077406 cttc 21077403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 87 - 189
Target Start/End: Complemental strand, 13064709 - 13064607
Alignment:
Q  87 ttttcgcccgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttca 186  Q
    |||| ||||||||||||||||||  || | |||||| ||||||| || ||| ||||||||| |||||||||||||||| |||||| ||||||||| ||||    
T  13064709 tttttgcccgttcttccgtcttgtgatgcattggaacttgaaatcaaatttgttcactttgaattgtcttcaaataccctctaagaaccattgaacttca 13064610  T
Q  187 atc 189  Q
    |||    
T  13064609 atc 13064607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 107 - 170
Target Start/End: Complemental strand, 23353881 - 23353818
Alignment:
Q  107 ttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaa 170  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||    
T  23353881 ttgcaatgccttggaacttgaaatgaattttcttcactttgtattgtcttaaaagaccttctaa 23353818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 95 - 171
Target Start/End: Complemental strand, 4733031 - 4732955
Alignment:
Q  95 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaag 171  Q
    |||||||| |||||| ||| ||||| ||||||||||||||||||||||  |||||||||||| ||| ||||||||||    
T  4733031 cgttcttctgtcttgaaatgccttgaaatttgaaatgaattttcttcaacttgtattgtctttaaagaccttctaag 4732955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 120 - 178
Target Start/End: Original strand, 5906627 - 5906685
Alignment:
Q  120 gaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccatt 178  Q
    ||||||||||||||||||||| |||||||||| |||||||| |||||||||| ||||||    
T  5906627 gaatttgaaatgaattttcttaactttgtattatcttcaaaaaccttctaagaaccatt 5906685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 96 - 178
Target Start/End: Original strand, 17026537 - 17026619
Alignment:
Q  96 gttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccatt 178  Q
    |||||||||||| | || |||| |||| ||||||| ||||||||||||||||||||||||||||| || || |||| ||||||    
T  17026537 gttcttccgtctggaaactcctaggaacttgaaattaattttcttcactttgtattgtcttcaaaaactttttaagaaccatt 17026619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 95 - 179
Target Start/End: Complemental strand, 15192478 - 15192394
Alignment:
Q  95 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattg 179  Q
    |||||||||||||   || |||| |||| |||||||||||| ||||||||||| |||||||||||  |||||||||| |||||||    
T  15192478 cgttcttccgtctaaaaactcctaggaacttgaaatgaattgtcttcactttgaattgtcttcaacaaccttctaagaaccattg 15192394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 95 - 195
Target Start/End: Complemental strand, 22119895 - 22119796
Alignment:
Q  95 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcat 194  Q
    |||||||||||||||||||  ||||||| ||||||| |||||| | |||||| ||||||| ||||| ||| |||||| ||||||||  |||||| |||||    
T  22119895 cgttcttccgtcttgcaatgacttggaacttgaaattaattttgtacacttt-tattgtcctcaaaaaccctctaagaaccattgatcttcaatattcat 22119797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 95 - 181
Target Start/End: Original strand, 20985232 - 20985318
Alignment:
Q  95 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaa 181  Q
    |||| ||||||| |||| |  |||| ||||| |||||| ||||||||||||||||||||||||||||   ||||||| |||||||||    
T  20985232 cgtttttccgtcatgcattgtcttgaaatttcaaatgagttttcttcactttgtattgtcttcaaatgttttctaagaaccattgaa 20985318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 95 - 157
Target Start/End: Complemental strand, 29437736 - 29437674
Alignment:
Q  95 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttc 157  Q
    |||||||| ||||||| || |||||||| || ||||||| |||||||||||||||||||||||    
T  29437736 cgttcttctgtcttgcgatgccttggaacttcaaatgaagtttcttcactttgtattgtcttc 29437674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 114 - 171
Target Start/End: Original strand, 1695705 - 1695762
Alignment:
Q  114 tccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaag 171  Q
    |||| |||| |||||||||||||| |||||||||||||||||||||  ||||||||||    
T  1695705 tcctaggaacttgaaatgaattttattcactttgtattgtcttcaacaaccttctaag 1695762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 34864167 - 34864220
Alignment:
Q  127 aaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattga 180  Q
    |||||||||||||||| |||||||||||| |||| |||||||||| ||||||||    
T  34864167 aaatgaattttcttcattttgtattgtctacaaaaaccttctaagaaccattga 34864220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 124 - 180
Target Start/End: Original strand, 12111196 - 12111252
Alignment:
Q  124 ttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattga 180  Q
    |||||||||||||||||||||||||||| |||| ||| ||||| |||| ||||||||    
T  12111196 ttgaaatgaattttcttcactttgtattatcttaaaaaaccttataagaaccattga 12111252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 179
Target Start/End: Complemental strand, 19602073 - 19601989
Alignment:
Q  95 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattg 179  Q
    |||||||||||  |||| |  |||||||  ||||||||||||||| |||||| ||||||||||||| ||||| |||| |||||||    
T  19602073 cgttcttccgtgctgcattgtcttggaacatgaaatgaattttctccactttttattgtcttcaaaaaccttttaagaaccattg 19601989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 195
Target Start/End: Complemental strand, 26160029 - 26159931
Alignment:
Q  95 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcat 194  Q
    ||||||||||||||| ||| |||||||| |||||||||||||||||||  || | |||  |||||| ||||| |||| ||||||||  ||||||||||||    
T  26160029 cgttcttccgtcttgaaat-ccttggaacttgaaatgaattttcttcaacttat-ttgatttcaaagaccttataagaaccattgatcttcaatcttcat 26159932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 171
Target Start/End: Complemental strand, 27303052 - 27302976
Alignment:
Q  95 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaag 171  Q
    |||||||||||||   || |||| |||| || |||||||||||||||||||| || |||||||||| ||||||||||    
T  27303052 cgttcttccgtctgaaaactcctaggaacttaaaatgaattttcttcactttataatgtcttcaaaaaccttctaag 27302976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 194
Target Start/End: Original strand, 47024624 - 47024703
Alignment:
Q  114 tccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcat 194  Q
    |||| |||| ||||||| |||| ||||||||||||| ||| |||||| |||||||||| ||||||| | ||||||||||||    
T  47024624 tcctaggaacttgaaataaattctcttcactttgtactgttttcaaaaaccttctaagaaccattg-acttcaatcttcat 47024703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 171
Target Start/End: Complemental strand, 5676474 - 5676399
Alignment:
Q  96 gttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaag 171  Q
    |||||||||||| | || |||| | || | |||||||||||||||||  |||||||||||||||| ||||||||||    
T  5676474 gttcttccgtctagaaactcctagtaactcgaaatgaattttcttcatcttgtattgtcttcaaaaaccttctaag 5676399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 18898238 - 18898156
Alignment:
Q  114 tccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcatacc 197  Q
    |||| |||| ||||||||||||||||| |||||||||||| |||||| ||||| |||| |||| || | |||||||| ||||||    
T  18898238 tcctaggaacttgaaatgaattttctttactttgtattgtattcaaaaaccttttaagaaccactg-acttcaatctgcatacc 18898156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 10320079 - 10320135
Alignment:
Q  114 tccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaa 170  Q
    |||| |||| ||||||| |||||||||||||||||||||| ||| || |||||||||    
T  10320079 tcctaggaacttgaaataaattttcttcactttgtattgttttcgaagaccttctaa 10320135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 18444504 - 18444454
Alignment:
Q  96 gttcttccgtcttgcaattccttggaatttgaaatgaattttcttcacttt 146  Q
    |||||||||||||||||| ||||| ||   |||||||||||||||||||||    
T  18444504 gttcttccgtcttgcaatgccttgaaaaacgaaatgaattttcttcacttt 18444454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 195
Target Start/End: Original strand, 7024058 - 7024158
Alignment:
Q  95 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcat 194  Q
    ||||||||||| ||| |||  ||| ||| || | ||||||||||||||  ||||||| |||||||  | |||||||| |||||||   ||||||||||||    
T  7024058 cgttcttccgtgttgaaatgtcttagaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcat 7024157  T
Q  195 a 195  Q
    |    
T  7024158 a 7024158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 51884853 - 51884813
Alignment:
Q  119 ggaatttgaaatgaattttcttcactttgtattgtcttcaa 159  Q
    |||| ||||||| |||||||||||||||||||||| |||||    
T  51884853 ggaacttgaaattaattttcttcactttgtattgtattcaa 51884813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 95 - 195
Target Start/End: Original strand, 26499686 - 26499786
Alignment:
Q  95 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcat 194  Q
    |||| |||||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||  ||||||||||||    
T  26499686 cgttgttccgtcttgcaatgccttgaaacttgaaatgaattttctttactttgtattgtcttcaaaaaccttctaagaaccattgatcttcaatcttcat 26499785  T
Q  195 a 195  Q
    |    
T  26499786 a 26499786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 96 - 195
Target Start/End: Complemental strand, 30355591 - 30355492
Alignment:
Q  96 gttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcata 195  Q
    |||||||||||| | || ||||  ||| |||||||||||||| |||||||| ||||||||||||| |||||||||| || |||||  |||||||||||||    
T  30355591 gttcttccgtctggaaactcctgtgaacttgaaatgaattttattcactttttattgtcttcaaaaaccttctaagaacgattgatcttcaatcttcata 30355492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 114 - 179
Target Start/End: Original strand, 17860307 - 17860372
Alignment:
Q  114 tccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattg 179  Q
    |||| |||| |||||||||||||||||||||||||||||||| |||| |||||||||| |||||||    
T  17860307 tcctaggaacttgaaatgaattttcttcactttgtattgtctacaaaaaccttctaagaaccattg 17860372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 114 - 180
Target Start/End: Complemental strand, 15575180 - 15575114
Alignment:
Q  114 tccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattga 180  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||  |||||||||| ||| ||||    
T  15575180 tcctaggaacttgaaatgaattttcttcactttgtattgtcttcaacgaccttctaagaacccttga 15575114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 87 - 195
Target Start/End: Original strand, 14768107 - 14768215
Alignment:
Q  87 ttttcgcccgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttca 186  Q
    |||||| |||||||||| || ||  || ||||| || || ||||  ||||||||| |||| |||||||||||||||||||||| | || |||||||||||    
T  14768107 ttttcgtccgttcttccatcctgtgatgccttgtaacttaaaatctattttcttcgctttctattgtcttcaaataccttctatgaacgattgaatttca 14768206  T
Q  187 atcttcata 195  Q
     || |||||    
T  14768207 ttcatcata 14768215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 131 - 195
Target Start/End: Complemental strand, 33638325 - 33638261
Alignment:
Q  131 gaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcata 195  Q
    ||||||| ||||||||||||| |||||||| ||||| |||| ||||||||  |||||||||||||    
T  33638325 gaattttattcactttgtattatcttcaaagaccttataagaaccattgatcttcaatcttcata 33638261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 132 - 195
Target Start/End: Original strand, 33638381 - 33638444
Alignment:
Q  132 aattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcata 195  Q
    |||||| ||||||||||||| |||||||| ||||| |||| ||||||||  |||||||||||||    
T  33638381 aattttattcactttgtattatcttcaaagaccttataagaaccattgatcttcaatcttcata 33638444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 195
Target Start/End: Original strand, 12972226 - 12972324
Alignment:
Q  97 ttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcata 195  Q
    ||||||||||||||||| ||||| || || ||||||||| |||| | | | | |||| || |||||||||| ||| ||||||||  |||||||||||||    
T  12972226 ttcttccgtcttgcaatgccttgaaagtttaaatgaattgtctttaatgtctgttgtattaaaataccttcaaagaaccattgatcttcaatcttcata 12972324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 95 - 195
Target Start/End: Original strand, 14924259 - 14924357
Alignment:
Q  95 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcat 194  Q
    ||||||||||||||||||| |||| |||  ||||||||||||  ||||  |||||||||||||||| || ||| | | ||||||||  |||||| |||||    
T  14924259 cgttcttccgtcttgcaatgccttcgaacctgaaatgaattt--ttcatcttgtattgtcttcaaaaacattccatgaaccattgatcttcaattttcat 14924356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 114 - 171
Target Start/End: Complemental strand, 15998766 - 15998709
Alignment:
Q  114 tccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaag 171  Q
    |||| |||| ||||||||||||| |||||||||||||||||| |||  ||||||||||    
T  15998766 tcctaggaacttgaaatgaatttgcttcactttgtattgtctacaacaaccttctaag 15998709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 115 - 179
Target Start/End: Original strand, 24507302 - 24507366
Alignment:
Q  115 ccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattg 179  Q
    |||||||| ||||||| |||||||||||||||||||| |||||| | | |||||||  |||||||    
T  24507302 ccttggaacttgaaataaattttcttcactttgtattttcttcataaaacttctaacaaccattg 24507366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 153
Target Start/End: Original strand, 17198664 - 17198719
Alignment:
Q  98 tcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgt 153  Q
    ||||| |||||||||| |||||||| || |||| |||||| |||||||||||||||    
T  17198664 tcttctgtcttgcaatgccttggaactttaaataaattttattcactttgtattgt 17198719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 23418983 - 23419047
Alignment:
Q  129 atgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttca 193  Q
    ||||||||||||||  |||||||| ||||||| |||||||| ||| ||||||  |||| ||||||    
T  23418983 atgaattttcttcaacttgtattgacttcaaaaaccttctacgtaacattgatattcattcttca 23419047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 97 - 178
Target Start/End: Complemental strand, 18818975 - 18818894
Alignment:
Q  97 ttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccatt 178  Q
    |||||||||||||||||  ||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  18818975 ttcttccgtcttgcaatgtcttggaacttgaattgaattttcttcactttgtattgtcttcaaagaccttctaagaaccatt 18818894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 95 - 195
Target Start/End: Original strand, 14921878 - 14921978
Alignment:
Q  95 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcat 194  Q
    |||||||| ||||||  || |||||||| || |||||| |||||||||||||||||||||| || |||||||||||| ||||||||| ||||||||||||    
T  14921878 cgttcttctgtcttgtgatgccttggaaattcaaatgatttttcttcactttgtattgtctacatataccttctaagaaccattgaacttcaatcttcat 14921977  T
Q  195 a 195  Q
    |    
T  14921978 a 14921978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 95 - 194
Target Start/End: Original strand, 17415003 - 17415101
Alignment:
Q  95 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcat 194  Q
    |||||||||||||||||||  ||| ||| ||||||||||||||||||||||| | ||||||||||||| || ||||| ||||||| ||||||||||||||    
T  17415003 cgttcttccgtcttgcaatgtcttagaacttgaaatgaattttcttcactttttgttgtcttcaaataactcctaagaaccattg-atttcaatcttcat 17415101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 95 - 179
Target Start/End: Original strand, 27417102 - 27417186
Alignment:
Q  95 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattg 179  Q
    ||||||||||||| | || ||||||||| |||||||||||||||||||||||||||||| |||||| ||||||| || |||||||    
T  27417102 cgttcttccgtctggaaactccttggaacttgaaatgaattttcttcactttgtattgttttcaaaaaccttcttagaaccattg 27417186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 95 - 195
Target Start/End: Original strand, 34063680 - 34063780
Alignment:
Q  95 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcat 194  Q
    |||||||||||||  |||| |||||||| || |||||||||||||||||||||||||||||||||||  |||||||  |||||  || || |||||||||    
T  34063680 cgttcttccgtctcacaatgccttggaacttcaaatgaattttcttcactttgtattgtcttcaaatgtcttctaataaccatcaaaattaaatcttcat 34063779  T
Q  195 a 195  Q
    |    
T  34063780 a 34063780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 97 - 195
Target Start/End: Original strand, 18236144 - 18236242
Alignment:
Q  97 ttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcata 195  Q
    ||||||||||||  ||| |||| ||| |||||||||||||||||||  |||||||||||||||  |||||||||| |||||||   |||||||||||||    
T  18236144 ttcttccgtctttaaatgcctttgaacttgaaatgaattttcttcatcttgtattgtcttcaacaaccttctaagaaccattggccttcaatcttcata 18236242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 115 - 180
Target Start/End: Original strand, 22525679 - 22525744
Alignment:
Q  115 ccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattga 180  Q
    ||||| || ||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  22525679 ccttgaaacttgaaataaattttcttcactttgtgttgtcttcaaataccttctaagaaccattga 22525744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 16593609 - 16593675
Alignment:
Q  114 tccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattga 180  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||  |||||||||| ||| ||||    
T  16593609 tcctaggaacttgaaatgaattttcttcactttgtattgtcttcaacaaccttctaagaacccttga 16593675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 21505002 - 21505062
Alignment:
Q  119 ggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattg 179  Q
    ||||||||||||||||||||||||  |||||||||||||||| ||||||| || |||||||    
T  21505002 ggaatttgaaatgaattttcttcaacttgtattgtcttcaaaaaccttctcagaaccattg 21505062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 87 - 171
Target Start/End: Complemental strand, 24188252 - 24188168
Alignment:
Q  87 ttttcgcccgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaag 171  Q
    ||||||||||||| |||||||| | |  |||||| | ||| ||||||| ||||||||||||||||||||||||| || |||||||    
T  24188252 ttttcgcccgttcctccgtctttccaggccttggcacttggaatgaatcttcttcactttgtattgtcttcaaaaactttctaag 24188168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 195
Target Start/End: Complemental strand, 1732814 - 1732726
Alignment:
Q  107 ttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcata 195  Q
    ||||||| | |||||| ||||||| |||||| |||| ||||||||| |||||||||  ||||||| | ||||||  |||||||||||||    
T  1732814 ttgcaatgcgttggaacttgaaataaattttattcattttgtattgccttcaaatatattctaagaatcattgatcttcaatcttcata 1732726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 30999017 - 30998961
Alignment:
Q  124 ttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattga 180  Q
    |||||||||||||||| |||||||||||||||||||  |||||||||| ||| ||||    
T  30999017 ttgaaatgaattttctccactttgtattgtcttcaacaaccttctaagaacccttga 30998961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 125 - 180
Target Start/End: Complemental strand, 25474282 - 25474227
Alignment:
Q  125 tgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattga 180  Q
    |||||||||||||||||||||| ||||||||||||  |||||||||| ||| ||||    
T  25474282 tgaaatgaattttcttcactttatattgtcttcaacaaccttctaagaacccttga 25474227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 198
Target Start/End: Complemental strand, 31274198 - 31274128
Alignment:
Q  128 aatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcatacct 198  Q
    |||||||||||||||  || ||||||||||||| |||||||||| |||||| |  |||||| |||||||||    
T  31274198 aatgaattttcttcaacttatattgtcttcaaagaccttctaagaaccattaatcttcaattttcatacct 31274128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 126 - 195
Target Start/End: Complemental strand, 31262241 - 31262172
Alignment:
Q  126 gaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcata 195  Q
    |||||||||||||||||  || ||||||||||||| |||| ||||| |||||| |  |||||||||||||    
T  31262241 gaaatgaattttcttcaacttatattgtcttcaaagacctactaagaaccattaatcttcaatcttcata 31262172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 195
Target Start/End: Complemental strand, 19541302 - 19541212
Alignment:
Q  104 gtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcata 195  Q
    |||||||||| |||  ||| ||||||||||  ||||| |||||||||||||||  |||||||| |||| |||||||   |||||||||||||    
T  19541302 gtcttgcaatgcctatgaacttgaaatgaagattcttaactttgtattgtctt-taataccttataagaaccattggtcttcaatcttcata 19541212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 32619863 - 32619827
Alignment:
Q  132 aattttcttcactttgtattgtcttcaaataccttct 168  Q
    |||||| |||||||||||||||||||||| |||||||    
T  32619863 aattttattcactttgtattgtcttcaaaaaccttct 32619827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 101 - 193
Target Start/End: Original strand, 11544 - 11635
Alignment:
Q  101 tccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttca 193  Q
    ||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||| |||| | ||||||  |||||||||||    
T  11544 tccgtcttgcaatgccttggactt-gaaatgaattttcttcactttgtattgtcttcaaataccttataagaatcattgatattcaatcttca 11635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 95 - 195
Target Start/End: Complemental strand, 29292045 - 29291945
Alignment:
Q  95 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcat 194  Q
    |||||||||||||||||||   ||||||||||||||||||||| |||||||| | ||||||||||| |||||||||| ||||||||  |||||| |||||    
T  29292045 cgttcttccgtcttgcaatgaattggaatttgaaatgaatttttttcactttctgttgtcttcaaagaccttctaagaaccattgatcttcaatattcat 29291946  T
Q  195 a 195  Q
    |    
T  29291945 a 29291945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 87 - 195
Target Start/End: Complemental strand, 32239571 - 32239463
Alignment:
Q  87 ttttcgcccgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttca 186  Q
    |||||||||||| ||| |||||||||| ||||| || ||||||||||||||||||||||| ||||||||| ||  ||||| |||  ||||||||| ||||    
T  32239571 ttttcgcccgtttttctgtcttgcaatgccttgaaacttgaaatgaattttcttcactttttattgtctttaagaaccttataaaaaccattgaacttca 32239472  T
Q  187 atcttcata 195  Q
    |||||||||    
T  32239471 atcttcata 32239463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 96 - 195
Target Start/End: Complemental strand, 11437694 - 11437595
Alignment:
Q  96 gttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcata 195  Q
    |||||||||||||||||| | |||||| || ||||||||| |||||||| ||||||||||||||||  |||||||| ||||||||| |||||| ||||||    
T  11437694 gttcttccgtcttgcaatgctttggaacttcaaatgaattatcttcactctgtattgtcttcaaatgtcttctaagaaccattgaacttcaattttcata 11437595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 95 - 195
Target Start/End: Original strand, 13583355 - 13583459
Alignment:
Q  95 cgttcttccgtcttgcaattccttggaatttgaaatgaattttctt----cactttgtattgtcttcaaataccttctaagtaccattgaatttcaatct 190  Q
    ||||||||||||||||||| |||||||| || ||||||||||| ||    |||||||||||||||||||||| |||||||| ||||||||| |||||||     
T  13583355 cgttcttccgtcttgcaataccttggaacttcaaatgaatttttttttttcactttgtattgtcttcaaatatcttctaagaaccattgaacttcaatca 13583454  T
Q  191 tcata 195  Q
    |||||    
T  13583455 tcata 13583459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 97 - 195
Target Start/End: Complemental strand, 30544035 - 30543936
Alignment:
Q  97 ttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttct-aagtaccattgaatttcaatcttcata 195  Q
    |||||||| |||||||| |||||||| ||||||||||||||||||||||| ||||||||| ||||| ||| | ||| ||||||||| |||||||||||||    
T  30544035 ttcttccgccttgcaatgccttggaacttgaaatgaattttcttcactttatattgtctttaaatatcttttaaagaaccattgaacttcaatcttcata 30543936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 96 - 195
Target Start/End: Original strand, 27097642 - 27097739
Alignment:
Q  96 gttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcata 195  Q
    |||||||||||||||||| |||||||| ||||| |||||||||||||  |||||||||||||||| |||||||||| || ||| |  |||||||||||||    
T  27097642 gttcttccgtcttgcaatgccttggaacttgaattgaattttcttcaacttgtattgtcttcaaagaccttctaagaactattca--ttcaatcttcata 27097739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 96 - 195
Target Start/End: Original strand, 28901190 - 28901288
Alignment:
Q  96 gttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcata 195  Q
    |||||||||||| | || |||| |||  ||||||||||||||||||||||||||||||||||| | ||||| |||| ||||||||| |||||||||||||    
T  28901190 gttcttccgtctagaaactcctaggagcttgaaatgaattttcttcactttgtattgtcttcagaaaccttataagaaccattgaa-ttcaatcttcata 28901288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 105 - 195
Target Start/End: Original strand, 28291950 - 28292040
Alignment:
Q  105 tcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcata 195  Q
    |||||||||  ||||||| |||||||  |||||||||| ||||||||||||||||| |||||||||| |||||| |  |||||||||||||    
T  28291950 tcttgcaatggcttggaacttgaaatttattttcttcattttgtattgtcttcaaagaccttctaagaaccattaatcttcaatcttcata 28292040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 96 - 192
Target Start/End: Original strand, 14424653 - 14424749
Alignment:
Q  96 gttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttc 192  Q
    ||||||||||||||||||  ||| ||| |  ||||||||||||||||| ||| ||||| |||||| |||||||||| ||||||||  ||||||||||    
T  14424653 gttcttccgtcttgcaatatcttagaactataaatgaattttcttcacattgaattgtgttcaaaaaccttctaagaaccattgatcttcaatcttc 14424749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 97 - 165
Target Start/End: Complemental strand, 31436742 - 31436675
Alignment:
Q  97 ttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaatacct 165  Q
    |||||| |||||||||| |||||||| ||||||| |||||| |||||||||||||||||||||||||||    
T  31436742 ttcttctgtcttgcaatgccttggaacttgaaat-aatttttttcactttgtattgtcttcaaatacct 31436675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 96 - 171
Target Start/End: Original strand, 16052117 - 16052192
Alignment:
Q  96 gttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaag 171  Q
    |||||||||||| | || |||  |||| ||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  16052117 gttcttccgtctagaaactccaaggaacttgaaatgaattttcttcattttgtattgtcttcaaaaaccttctaag 16052192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 97 - 195
Target Start/End: Complemental strand, 5154031 - 5153933
Alignment:
Q  97 ttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcata 195  Q
    |||||||||||||||||  ||||||| |||||||||||||| ||||  || ||||||||||||| |||||| ||  | ||||||  |||||||||||||    
T  5154031 ttcttccgtcttgcaatgtcttggaacttgaaatgaattttattcatgttatattgtcttcaaaaaccttccaataatcattgatcttcaatcttcata 5153933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 105 - 195
Target Start/End: Original strand, 30850949 - 30851039
Alignment:
Q  105 tcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcata 195  Q
    |||||||||  ||||||| ||||||| |||||||||||||||||||| | |||||| || ||||||| ||| ||||  |||||||||||||    
T  30850949 tcttgcaatgacttggaacttgaaattaattttcttcactttgtattatattcaaagacattctaagaaccgttgatcttcaatcttcata 30851039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 95 - 180
Target Start/End: Original strand, 11310096 - 11310180
Alignment:
Q  95 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattga 180  Q
    ||||||||||||| | || |||| |||| ||||||| |||||||||||||||||||||| |||||| |||||||||| | ||||||    
T  11310096 cgttcttccgtctagaaactcctaggaacttgaaat-aattttcttcactttgtattgttttcaaaaaccttctaagaatcattga 11310180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 114 - 183
Target Start/End: Original strand, 22894390 - 22894459
Alignment:
Q  114 tccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatt 183  Q
    ||||||||| || ||| |||||||||||||||||||||||||||||| ||| |||||| || ||||||||    
T  22894390 tccttggaacttcaaaagaattttcttcactttgtattgtcttcaaaaaccatctaagaacaattgaatt 22894459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 114 - 180
Target Start/End: Complemental strand, 16054550 - 16054484
Alignment:
Q  114 tccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattga 180  Q
    |||| |||| |||||||||||||||||||||||||||| |||||||  |||||||||| ||| ||||    
T  16054550 tcctaggaacttgaaatgaattttcttcactttgtattttcttcaacaaccttctaagaacccttga 16054484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 114 - 179
Target Start/End: Complemental strand, 28902345 - 28902280
Alignment:
Q  114 tccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattg 179  Q
    |||| |||| || ||||||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  28902345 tcctaggaacttaaaatgaattttattcactttgtattgtcttcaataaccttctaagaaccattg 28902280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 124 - 180
Target Start/End: Original strand, 13081803 - 13081859
Alignment:
Q  124 ttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattga 180  Q
    ||||||||||||||||||| ||||||||||||||||  |||||||||| ||| ||||    
T  13081803 ttgaaatgaattttcttcattttgtattgtcttcaacaaccttctaagaacccttga 13081859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 171
Target Start/End: Complemental strand, 24120499 - 24120423
Alignment:
Q  95 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaag 171  Q
    ||||||||||||| | ||||||| |||| |||||||||||||||||||  || |||| ||||| || ||||||||||    
T  24120499 cgttcttccgtctggaaattcctaggaacttgaaatgaattttcttcatcttttattatcttcgaaaaccttctaag 24120423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 153
Target Start/End: Complemental strand, 12357734 - 12357696
Alignment:
Q  115 ccttggaatttgaaatgaattttcttcactttgtattgt 153  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  12357734 ccttggaatttgaaatgaattttcttcactttttattgt 12357696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 153
Target Start/End: Complemental strand, 12358862 - 12358824
Alignment:
Q  115 ccttggaatttgaaatgaattttcttcactttgtattgt 153  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  12358862 ccttggaatttgaaatgaattttcttcactttttattgt 12358824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 5570008 - 5570063
Alignment:
Q  124 ttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattg 179  Q
    |||||||||||||||||||  |||||||||||| ||| | |||||||| |||||||    
T  5570008 ttgaaatgaattttcttcatcttgtattgtctttaaaaagcttctaagaaccattg 5570063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 195
Target Start/End: Original strand, 6888061 - 6888132
Alignment:
Q  124 ttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcata 195  Q
    |||||| | ||||||||||  |||||||||||||||| || || |||| ||||||||  |||||||||||||    
T  6888061 ttgaaacggattttcttcaacttgtattgtcttcaaagacattttaagaaccattgatcttcaatcttcata 6888132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 28859119 - 28859163
Alignment:
Q  136 ttcttcactttgtattgtcttcaaataccttctaagtaccattga 180  Q
    ||||||||||| ||||||||||||| ||| |||||| ||||||||    
T  28859119 ttcttcactttttattgtcttcaaaaaccatctaagaaccattga 28859163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 95 - 195
Target Start/End: Complemental strand, 29544795 - 29544695
Alignment:
Q  95 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcat 194  Q
    |||||||||||||   || |||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||  ||||||||||||    
T  29544795 cgttcttccgtctgaaaactcctaggaacttgaaatgaattttcttcactttgtattgtcttcaaaaaccttctaagaatcattgatcttcaatcttcat 29544696  T
Q  195 a 195  Q
    |    
T  29544695 a 29544695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 97 - 191
Target Start/End: Original strand, 24596845 - 24596939
Alignment:
Q  97 ttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatctt 191  Q
    ||||| ||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||  |||||| | |||| |||| |||||||||    
T  24596845 ttctttcgtcttgcaatgccttggaacttcaaatgaattttcttcactttgtattgtcttcaaatttcttctatgaaccactgaacttcaatctt 24596939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 95 - 180
Target Start/End: Original strand, 8308875 - 8308960
Alignment:
Q  95 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattga 180  Q
    ||||||||||||||||||| |||||||| |||| |||||| ||||| | ||||||||||||||||| |||||||||| ||||||||    
T  8308875 cgttcttccgtcttgcaataccttggaacttgatatgaatcttctttattttgtattgtcttcaaagaccttctaagaaccattga 8308960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 124 - 195
Target Start/End: Original strand, 21545695 - 21545766
Alignment:
Q  124 ttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcata 195  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||  |||||||||||||    
T  21545695 ttgaaatgaattttcttcactttttattgtcttcaaatactttctaagaaccattgatcttcaatcttcata 21545766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 87 - 184
Target Start/End: Complemental strand, 4829071 - 4828975
Alignment:
Q  87 ttttcgcccgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaattt 184  Q
    |||||| |||||||| | ||||  ||| |||||||| |||||||||||| |||||||||||||||||||||||||| |||||||| | ||||||||||    
T  4829071 ttttcggccgttctttcatcttttaatcccttggaacttgaaatgaattatcttcactttgtattgtcttcaaataacttctaag-atcattgaattt 4828975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 114 - 195
Target Start/End: Complemental strand, 20017209 - 20017129
Alignment:
Q  114 tccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcata 195  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||  |||||||||| ||||||| | |||||||||||||    
T  20017209 tcctaggaacttgaaatgaattttcttcactttgtattgtcttcaagaaccttctaagaaccattg-agttcaatcttcata 20017129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 23125152 - 23125076
Alignment:
Q  119 ggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcata 195  Q
    |||||||||||||||||||||||||||||||||||||| ||  | ||| |||| ||||||||| |||||||||||||    
T  23125152 ggaatttgaaatgaattttcttcactttgtattgtctttaagaatcttataagaaccattgaacttcaatcttcata 23125076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 115 - 195
Target Start/End: Complemental strand, 30405849 - 30405769
Alignment:
Q  115 ccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcata 195  Q
    ||||||||||| ||| ||||| | ||||||||||||||| ||||||||||||||||| | ||||||| |||||||||||||    
T  30405849 ccttggaatttcaaacgaattgtattcactttgtattgtattcaaataccttctaagaatcattgaacttcaatcttcata 30405769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 87 - 195
Target Start/End: Complemental strand, 18496848 - 18496740
Alignment:
Q  87 ttttcgcccgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttca 186  Q
    |||||| |||||||| ||||||| ||| |||||||| |||||||||||||||||||  ||||||| |||||||  || ||||||| ||||||    ||||    
T  18496848 ttttcgaccgttcttacgtcttgaaatgccttggaacttgaaatgaattttcttcatcttgtattttcttcaacaacattctaagaaccattattcttca 18496749  T
Q  187 atcttcata 195  Q
    |||||||||    
T  18496748 atcttcata 18496740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 124 - 193
Target Start/End: Original strand, 20470678 - 20470747
Alignment:
Q  124 ttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttca 193  Q
    ||||||| ||||||||||| ||||||||||||||||  |||||||||| ||||||||| |||||| ||||    
T  20470678 ttgaaatcaattttcttcattttgtattgtcttcaagaaccttctaagaaccattgaacttcaatattca 20470747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 95 - 195
Target Start/End: Complemental strand, 7494971 - 7494872
Alignment:
Q  95 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcat 194  Q
    ||||||||||||| | || |||| | |  ||||||| |||||||||||||||||||||||||||   |||||||||| |||||| || ||||||||||||    
T  7494971 cgttcttccgtctggaaactcctagaatcttgaaataaattttcttcactttgtattgtcttcatggaccttctaagaaccatt-aacttcaatcttcat 7494873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 114 - 188
Target Start/End: Original strand, 22067661 - 22067735
Alignment:
Q  114 tccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaat 188  Q
    |||| |||| |||||||||||| | |||||||||||||||||||||  |||||||||| ||| |||| |||||||    
T  22067661 tcctaggaacttgaaatgaattcttttcactttgtattgtcttcaacaaccttctaagaacccttgattttcaat 22067735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 95 - 168
Target Start/End: Complemental strand, 7815598 - 7815525
Alignment:
Q  95 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttct 168  Q
    |||||||||||||   || ||||  ||| ||||||||||||||||||||||||||||||||||||  |||||||    
T  7815598 cgttcttccgtctgaaaactcctatgaacttgaaatgaattttcttcactttgtattgtcttcaacaaccttct 7815525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 159
Target Start/End: Complemental strand, 315448 - 315384
Alignment:
Q  95 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaa 159  Q
    ||||||| ||||| | || |||| |||| |||||||||||||| |||||||||||||||||||||    
T  315448 cgttctttcgtctggaaactcctaggaacttgaaatgaattttattcactttgtattgtcttcaa 315384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 179
Target Start/End: Complemental strand, 1074728 - 1074644
Alignment:
Q  95 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattg 179  Q
    ||||||||||||||| |||  ||||||| ||||||| | |||||||||  |||||||||||||||  ||||| |||| |||||||    
T  1074728 cgttcttccgtcttgaaatgtcttggaacttgaaattacttttcttcatcttgtattgtcttcaacaaccttttaagaaccattg 1074644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 161
Target Start/End: Original strand, 3487208 - 3487271
Alignment:
Q  96 gttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaat 161  Q
    ||||||||||||||||||  ||||||| || |||||||  ||||||||||||||||||||| ||||    
T  3487208 gttcttccgtcttgcaatgtcttggaacttcaaatgaa--ttcttcactttgtattgtcttaaaat 3487271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 160
Target Start/End: Original strand, 4977653 - 4977725
Alignment:
Q  87 ttttcgcccgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaa 160  Q
    |||||||||||||||||||||||  || |||||| | || ||||||||||| |||| |||||||| ||||||||    
T  4977653 ttttcgcccgttcttccgtcttgtgatgccttgg-acttcaaatgaattttgttcattttgtattttcttcaaa 4977725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 114 - 195
Target Start/End: Original strand, 9801733 - 9801813
Alignment:
Q  114 tccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcata 195  Q
    |||| |||| ||||||| ||||||| |||||||||||| |||| ||| ||||| |||| ||||||| | |||||||||||||    
T  9801733 tcctaggaacttgaaataaattttcctcactttgtattttctttaaaaaccttttaagaaccattg-acttcaatcttcata 9801813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 124 - 180
Target Start/End: Original strand, 10670443 - 10670499
Alignment:
Q  124 ttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattga 180  Q
    ||||||||| |||| ||||||||||||||||||  || |||||||||| ||||||||    
T  10670443 ttgaaatgatttttattcactttgtattgtcttagaaaaccttctaagaaccattga 10670499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 12358655 - 12358702
Alignment:
Q  148 tattgtcttcaaataccttctaagtaccattgaatttcaatcttcata 195  Q
    ||||||||||||| |||||||||| ||||||||  |||||||||||||    
T  12358655 tattgtcttcaaaaaccttctaagaaccattgatcttcaatcttcata 12358702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 155
Target Start/End: Original strand, 20461486 - 20461545
Alignment:
Q  96 gttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtct 155  Q
    ||||||| |||||||||| || || || |||||| |||||| ||||||||||||||||||    
T  20461486 gttcttcagtcttgcaatgccctgaaacttgaaaggaatttacttcactttgtattgtct 20461545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 20446445 - 20446392
Alignment:
Q  127 aaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattga 180  Q
    |||||| |||| |||||||||||||||||||||  |||||||||| ||| ||||    
T  20446445 aaatgattttttttcactttgtattgtcttcaacaaccttctaagaacccttga 20446392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 85 - 197
Target Start/End: Original strand, 22643734 - 22643846
Alignment:
Q  85 ccttttcgcccgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaattt 184  Q
    |||||||||  |||||| ||||||||||| ||||||| |||||||||||||||||||| |||||||||| |||||||||||| |||| |||| |||  ||    
T  22643734 ccttttcgcgtgttctttcgtcttgcaataccttggagtttgaaatgaattttcttcagtttgtattgtattcaaataccttttaagaaccactgatatt 22643833  T
Q  185 caatcttcatacc 197  Q
     |||||| |||||    
T  22643834 taatctttatacc 22643846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 95 - 193
Target Start/End: Original strand, 19763725 - 19763823
Alignment:
Q  95 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttca 193  Q
    ||||||||| |||| |||| | |||||| |||||||||||||||||||||||||||| |||||||| |||||||||| ||| ||||  |||||||||||    
T  19763725 cgttcttccatctttcaatcctttggaacttgaaatgaattttcttcactttgtattatcttcaaaaaccttctaagaacccttgatcttcaatcttca 19763823  T

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Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 95 - 195
Target Start/End: Original strand, 26329909 - 26330008
Alignment:
Q  95 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcat 194  Q
    |||||||||||||   || |||| |||| ||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||| | ||||||||||||    
T  26329909 cgttcttccgtctgaaaactcctaggaacttgaaatgaattttcttcactttgtattgtcttaaaaaaccttctaaggaccattg-acttcaatcttcat 26330007  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 95 - 191
Target Start/End: Original strand, 23157643 - 23157739
Alignment:
Q  95 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatctt 191  Q
    |||||||| |||||||||  |||||||| || ||||||| |||||||||||| | ||||||| ||||||||| |||| ||||||||| |||||||||    
T  23157643 cgttcttctgtcttgcaaaaccttggaactttaaatgaactttcttcactttctgttgtctttaaataccttataagaaccattgaacttcaatctt 23157739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 124 - 200
Target Start/End: Original strand, 7742738 - 7742814
Alignment:
Q  124 ttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcataccttc 200  Q
    |||||| || ||||||||||||||||||||||||||| |||||||||| ||||||||  |||| |||||||| ||||    
T  7742738 ttgaaacgatttttcttcactttgtattgtcttcaaagaccttctaagaaccattgatcttcagtcttcatatcttc 7742814  T

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Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 114 - 195
Target Start/End: Complemental strand, 17027783 - 17027703
Alignment:
Q  114 tccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcata 195  Q
    |||| |||| ||||||| ||||||||||||||||||||||||||||  |||||||||| | |||| || |||||||||||||    
T  17027783 tcctaggaaattgaaattaattttcttcactttgtattgtcttcaagaaccttctaagaagcatt-aacttcaatcttcata 17027703  T

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Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 95 - 195
Target Start/End: Original strand, 16622516 - 16622615
Alignment:
Q  95 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcat 194  Q
    ||||||||| ||| | || ||||  ||| ||||||||||||||||||| ||||||||||||||||| |||||||||| |||| ||   ||||||||||||    
T  16622516 cgttcttccatctggaaactcctacgaacttgaaatgaattttcttcaatttgtattgtcttcaaa-accttctaagaaccactggtcttcaatcttcat 16622614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 124 - 195
Target Start/End: Original strand, 18452680 - 18452751
Alignment:
Q  124 ttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcata 195  Q
    |||||||||||||||||||||||||||||| || ||| ||||| |||| ||||||||  |||||| ||||||    
T  18452680 ttgaaatgaattttcttcactttgtattgttttaaaaaaccttataagaaccattgatcttcaattttcata 18452751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 124 - 195
Target Start/End: Complemental strand, 30072362 - 30072291
Alignment:
Q  124 ttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcata 195  Q
    |||||||||| |||||||||||||||||||||| ||| ||||| |||| |||||| |  |||||||||||||    
T  30072362 ttgaaatgaaatttcttcactttgtattgtctttaaaaaccttttaagaaccattaatcttcaatcttcata 30072291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 114 - 195
Target Start/End: Original strand, 11274188 - 11274269
Alignment:
Q  114 tccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcata 195  Q
    |||| |||| |||||||||| |||| |||  |||||||||||||||| |||||||||| |||||||   |||||||||||||    
T  11274188 tcctaggaacttgaaatgaaatttcatcatcttgtattgtcttcaaagaccttctaagaaccattggtcttcaatcttcata 11274269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 195
Target Start/End: Complemental strand, 18178376 - 18178277
Alignment:
Q  95 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcat 194  Q
    ||||||||||||||| ||  |||||||| |||| ||||||||| |||| |||||||| |||||||| |||||| ||| || ||||   ||||||||||||    
T  18178376 cgttcttccgtcttgaaag-ccttggaacttgagatgaattttattcaatttgtattatcttcaaagaccttccaagaacaattggtcttcaatcttcat 18178278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 19331753 - 19331685
Alignment:
Q  127 aaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcata 195  Q
    |||||| || ||||||| |||||||||||||||||  |||||||  | |||||||||||||||||||||    
T  19331753 aaatgacttatcttcacattgtattgtcttcaaatgtcttctaaaaatcattgaatttcaatcttcata 19331685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 125 - 180
Target Start/End: Complemental strand, 24841998 - 24841943
Alignment:
Q  125 tgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattga 180  Q
    |||||||||||||||||| ||||| |||||||||||  ||||||||| ||||||||    
T  24841998 tgaaatgaattttcttcattttgtgttgtcttcaaaatccttctaagaaccattga 24841943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 121 - 192
Target Start/End: Complemental strand, 25367842 - 25367772
Alignment:
Q  121 aatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttc 192  Q
    ||||| |||||||||||||||||||| |||| |||||||||  |||||||| ||||||||| || |||||||    
T  25367842 aattttaaatgaattttcttcactttctatt-tcttcaaatgtcttctaagaaccattgaactttaatcttc 25367772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 195
Target Start/End: Original strand, 25594533 - 25594631
Alignment:
Q  96 gttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcata 195  Q
    |||||||||||| | || |||| |||| ||||| |||||||||||||||||| ||| ||| |||| |||||||||   |||||||  |||||||||||||    
T  25594533 gttcttccgtctggaaactcctaggaacttgaa-tgaattttcttcactttgcattatctacaaaaaccttctaatatccattgatattcaatcttcata 25594631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 18872912 - 18872966
Alignment:
Q  116 cttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaa 170  Q
    ||||||| || |||||||||||||||| |||||||||||||||| |||| |||||    
T  18872912 cttggaacttcaaatgaattttcttcaatttgtattgtcttcaactaccgtctaa 18872966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 195
Target Start/End: Complemental strand, 26070747 - 26070649
Alignment:
Q  97 ttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcata 195  Q
    ||||||||||||| ||| |||||||| ||||| ||||||||||  |  ||| |||||||||||| ||||| || | ||||| ||  |||||||||||||    
T  26070747 ttcttccgtcttgaaatgccttggaacttgaactgaattttctctaacttgcattgtcttcaaaaaccttatacgaaccatagatcttcaatcttcata 26070649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 16634293 - 16634238
Alignment:
Q  124 ttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattg 179  Q
    |||||||||||||| ||||  ||||||| |||||||| |||||||||| |||||||    
T  16634293 ttgaaatgaatttttttcatcttgtattttcttcaaaaaccttctaagaaccattg 16634238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 171
Target Start/End: Complemental strand, 25680832 - 25680786
Alignment:
Q  125 tgaaatgaattttcttcactttgtattgtcttcaaataccttctaag 171  Q
    |||||||||||||||| |||||||||||| ||| || ||||||||||    
T  25680832 tgaaatgaattttctttactttgtattgttttctaaaaccttctaag 25680786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 180
Target Start/End: Original strand, 17695302 - 17695387
Alignment:
Q  95 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattga 180  Q
    |||||||| |||||| ||| |||||||| ||   ||||||||||  ||  |||||||||||||||| |||||||||  ||||||||    
T  17695302 cgttcttcggtcttgaaatgccttggaacttaggatgaattttccccaacttgtattgtcttcaaaaaccttctaataaccattga 17695387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 12339899 - 12339947
Alignment:
Q  140 tcactttgtattgtcttcaaataccttctaagtaccattgaatttcaat 188  Q
    ||||||||||||||||||||  |||||||||| ||| |||| |||||||    
T  12339899 tcactttgtattgtcttcaacgaccttctaagaacccttgattttcaat 12339947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 191
Target Start/End: Complemental strand, 20694863 - 20694819
Alignment:
Q  147 gtattgtcttcaaataccttctaagtaccattgaatttcaatctt 191  Q
    ||||||||||||||||||||||||| |||||| |  |||||||||    
T  20694863 gtattgtcttcaaataccttctaagaaccatttatcttcaatctt 20694819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1149 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold1149
Description:

Target: scaffold1149; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 87 - 179
Target Start/End: Complemental strand, 2070 - 1978
Alignment:
Q  87 ttttcgcccgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattg 179  Q
    ||||| |||||||||| |||||||||    |||||| ||||||||||||||||| ||||||||||||||||||| ||| | |||| |||||||    
T  2070 ttttcacccgttcttctgtcttgcaaagtattggaacttgaaatgaattttctttactttgtattgtcttcaaaaaccatataagaaccattg 1978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 124 - 195
Target Start/End: Original strand, 5638 - 5708
Alignment:
Q  124 ttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcata 195  Q
    ||||| |||||||||||||||||||||| |||| ||| |||||||||| ||||||||| |||||||||||||    
T  5638 ttgaattgaattttcttcactttgtattttctttaaagaccttctaagaaccattgaa-ttcaatcttcata 5708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 124 - 195
Target Start/End: Original strand, 26823 - 26894
Alignment:
Q  124 ttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcata 195  Q
    |||||| |||||||||||||||||||||||||||||  || ||||||| ||||||||| |||||| ||||||    
T  26823 ttgaaacgaattttcttcactttgtattgtcttcaagaactttctaagaaccattgaacttcaattttcata 26894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 124 - 195
Target Start/End: Complemental strand, 21644 - 21573
Alignment:
Q  124 ttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaatttcaatcttcata 195  Q
    ||||||||||| ||||| ||||||||||||||| ||| |||||||||| ||||||||  |||||||||||||    
T  21644 ttgaaatgaatattcttaactttgtattgtctttaaaaaccttctaagaaccattgatcttcaatcttcata 21573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 179
Target Start/End: Complemental strand, 6451 - 6386
Alignment:
Q  114 tccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattg 179  Q
    |||| |||| ||||| ||| |||||||||||||||||| |||||||| | |||||| | |||||||    
T  6451 tcctaggaacttgaattgatttttcttcactttgtattttcttcaaaaatcttctaggaaccattg 6386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 95 - 180
Target Start/End: Original strand, 22453 - 22538
Alignment:
Q  95 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattga 180  Q
    ||||||||| ||| | || |||| |||| |||||||||||||||||||| |||||||||||| ||| |||||||| | ||||||||    
T  22453 cgttcttccctctggaaaatcctaggaacttgaaatgaattttcttcaccttgtattgtcttaaaaaaccttctatgaaccattga 22538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0362 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 97 - 179
Target Start/End: Complemental strand, 7892 - 7810
Alignment:
Q  97 ttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattg 179  Q
    |||||||||||   || |||| |||| ||||||||||||||||| |||||||| |||||||||  |||||||||| |||||||    
T  7892 ttcttccgtctgaaaactcctaggaacttgaaatgaattttcttgactttgtactgtcttcaacaaccttctaagaaccattg 7810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 2063 - 1999
Alignment:
Q  115 ccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattg 179  Q
    |||||||| ||||||| |||||||||||||||||||| |||||| | | |||||||  |||||||    
T  2063 ccttggaacttgaaataaattttcttcactttgtattttcttcataaaacttctaacaaccattg 1999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 2754 - 2690
Alignment:
Q  116 cttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattga 180  Q
    |||||||  |||||||| ||||||||||| ||||||||||||||||  ||| |||| ||||||||    
T  2754 cttggaacatgaaatgagttttcttcactctgtattgtcttcaaatgtcttataagaaccattga 2690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 12499 - 12435
Alignment:
Q  115 ccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattg 179  Q
    |||||||| ||||||| |||||||||||||||||||| |||||| | | |||||||  |||||||    
T  12499 ccttggaacttgaaataaattttcttcactttgtattttcttcataaaacttctaacaaccattg 12435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1026 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1026
Description:

Target: scaffold1026; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 161
Target Start/End: Original strand, 1701 - 1735
Alignment:
Q  127 aaatgaattttcttcactttgtattgtcttcaaat 161  Q
    |||||||||||||||||||||||||||| ||||||    
T  1701 aaatgaattttcttcactttgtattgtcatcaaat 1735  T

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Target: scaffold0836 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0836
Description:

Target: scaffold0836; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 161
Target Start/End: Complemental strand, 2851 - 2817
Alignment:
Q  127 aaatgaattttcttcactttgtattgtcttcaaat 161  Q
    |||||||||||||||||||||||||||| ||||||    
T  2851 aaatgaattttcttcactttgtattgtcatcaaat 2817  T

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Target: scaffold0386 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 171
Target Start/End: Original strand, 8548 - 8624
Alignment:
Q  95 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaag 171  Q
    ||||||||||| |   ||||||| |||| | ||||||||||| |||||  |||||||||||||||| ||||| ||||    
T  8548 cgttcttccgtttgaaaattcctaggaactcgaaatgaatttccttcatcttgtattgtcttcaaaaaccttttaag 8624  T

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Target: scaffold0386; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 171
Target Start/End: Original strand, 11638 - 11714
Alignment:
Q  95 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaag 171  Q
    ||||||||||||| | ||||||| |||| | |||||||| |||| |||  ||| |||| ||||||| ||||||||||    
T  11638 cgttcttccgtctggaaattcctaggaactcgaaatgaactttcgtcatcttgcattgacttcaaaaaccttctaag 11714  T

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