View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11033_low_11 (Length: 405)
Name: NF11033_low_11
Description: NF11033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11033_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 139 - 396
Target Start/End: Original strand, 43546322 - 43546579
Alignment:
| Q |
139 |
ggacttgaatcgaattaaattgttactatactgataataatgcattgcagatattggagttatgagtggagcaagcatgttgataaaagaaaatctaaaa |
238 |
Q |
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| T |
43546322 |
ggacttgaatcgaattaaattgttactatactgataataatgcattgcagatattggagttatgagtggagcaagcatgttgataaaagaaaatctaaaa |
43546421 |
T |
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| Q |
239 |
atctcacaaattcaacaagaaatactagtaggcagcctcaacgtgtgttccttaatcggatcactagcctccggaaaaacctccgacactatcggacgac |
338 |
Q |
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| T |
43546422 |
atctcacgaattcaacaagaaatactagtaggcagcctcaacttgtgttccttaatcggatcactagcctccggaaaaacctccgacactatcggacgac |
43546521 |
T |
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| Q |
339 |
gctacacaatcgtcttagcagcagccacattcttaatcggagctatcttcatctcact |
396 |
Q |
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| T |
43546522 |
gctacacaatcgtcttagcagcagccacattcttaatcggagctatcttcatgtcact |
43546579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 43546184 - 43546261
Alignment:
| Q |
1 |
cagatacacactcctctgtgctcttctctcgtcaaccaactccattctcctcggctatggtcactcacactcactcac |
78 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43546184 |
cagatacacactcctctgtgctcttctctcgtcaaccaactccattctcctcggctatggtcactcacactcactcac |
43546261 |
T |
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