View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11033_low_12 (Length: 393)
Name: NF11033_low_12
Description: NF11033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11033_low_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 218 - 371
Target Start/End: Original strand, 47591256 - 47591409
Alignment:
| Q |
218 |
cgtagtttcttctaggatttgattcggtgagagaaagaagaagatggttgtgaaagtgaagagagaaaatcttgaagcatgcatgacatgtcctctttgt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47591256 |
cgtagtttcttctaggatttgattcggtgagagaaagaagaagatggttgtgaaagtgaagagagaaaatcttgaagcatgcatgacatgtcctctttgt |
47591355 |
T |
|
| Q |
318 |
cataagctactcaaagatgctacaaccatatctctatgccttcatacttgtaat |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47591356 |
cataagctactcaaagatgctacaaccatatctctatgccttcatacttgtaat |
47591409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 47591047 - 47591225
Alignment:
| Q |
17 |
aattataagtagatagagtaagtagcgcagaaaaagcgttgttgggtttctttgatagtg--------agtgagtcgcgtgcgttgttacgctcgctcgc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
47591047 |
aattataagtagatagagtaagtagcgcagaaaaagcgttgttgggtttctttgatagtgagtgagtgagtgagtcgcgtgcgttgttacgctcgctcgc |
47591146 |
T |
|
| Q |
109 |
taactcgctgtttcttgttgtcgtctttgtctttcttcgttcaacaaaacaacgacattcgattccataaccgggtcgg |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47591147 |
taactcgctgtttcttgttgtcgtctttgtctttcttcgtgcaacaaaacaacgacattcgattccataaccgggtcgg |
47591225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University