View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11033_low_13 (Length: 391)

Name: NF11033_low_13
Description: NF11033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11033_low_13
NF11033_low_13
[»] chr1 (2 HSPs)
chr1 (132-380)||(6825436-6825684)
chr1 (18-113)||(6825345-6825440)
[»] chr4 (2 HSPs)
chr4 (312-377)||(9504581-9504646)
chr4 (264-344)||(3477072-3477152)
[»] chr5 (2 HSPs)
chr5 (321-353)||(29158177-29158209)
chr5 (317-353)||(18918798-18918834)
[»] chr6 (2 HSPs)
chr6 (312-375)||(31694972-31695035)
chr6 (312-353)||(24751463-24751504)
[»] chr8 (2 HSPs)
chr8 (312-352)||(5413950-5413990)
chr8 (312-372)||(18165130-18165190)
[»] chr7 (1 HSPs)
chr7 (312-352)||(46258261-46258301)


Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 132 - 380
Target Start/End: Original strand, 6825436 - 6825684
Alignment:
Q  132 catgcagttagttattattgtgtttcggtatgcaattgtgatgtaaaaagttttacagtgatggtgtatacaaattaaattttttcccaaattgtagtta 231  Q
    |||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6825436 catgcagttatttattattgtggttcggtatgcaattgcgatgtaaaaagttttacagtgatggtgtatacaaattaaattttttcccaaattgtagtta 6825535  T
Q  232 agcatgcaattgcgatgtaatataacaaatttagtgtatgtttggatgaacaataagttggggaaaactgtgttagcacagtgaatttgttgaaacttca 331  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||    
T  6825536 agcatgcaatttcgatgtaatataacaaatttagtgtatgtttggatgaacaataagttggggaaaaccatgttagcacagtcaatttgttgaaacttca 6825635  T
Q  332 aagtgtagcttttgtcaaaattgcggtaactcaccgtgattctgcctat 380  Q
    ||| |||||||||||||||||||||||  ||||||||||||||||||||    
T  6825636 aagggtagcttttgtcaaaattgcggtggctcaccgtgattctgcctat 6825684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 6825345 - 6825440
Alignment:
Q  18 gatttcgtatttctatgtatttatttattgattgcttgaattaatttagtaatgagatactcttgtggttttgattcaatgattttatttgcatgc 113  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6825345 gatttcgtatttgtatgtatttatttattgattgcttgaattaatttagtaatgagatactcttgtggttttgattcaatgattttatttgcatgc 6825440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 377
Target Start/End: Original strand, 9504581 - 9504646
Alignment:
Q  312 gtgaatttgttgaaacttcaaagtgtagcttttgtcaaaattgcggtaactcaccgtgattctgcc 377  Q
    |||| ||||||||| || |||||| ||||||||| ||||||||||||  ||||| |||||||||||    
T  9504581 gtgattttgttgaagctccaaagtctagcttttgccaaaattgcggtggctcactgtgattctgcc 9504646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 344
Target Start/End: Original strand, 3477072 - 3477152
Alignment:
Q  264 agtgtatgtttggatgaacaataagttggggaaaactgtgttagcacagtgaatttgttgaaacttcaaagtgtagctttt 344  Q
    ||||||||||||||||| ||||||||| || |||| | |  ||||||  ||| ||||||||| || |||||||||| ||||    
T  3477072 agtgtatgtttggatgagcaataagtttggcaaaattattgtagcaccatgattttgttgaagctacaaagtgtagttttt 3477152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 353
Target Start/End: Original strand, 29158177 - 29158209
Alignment:
Q  321 ttgaaacttcaaagtgtagcttttgtcaaaatt 353  Q
    |||||||||||||||||||||||||||||||||    
T  29158177 ttgaaacttcaaagtgtagcttttgtcaaaatt 29158209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 353
Target Start/End: Complemental strand, 18918834 - 18918798
Alignment:
Q  317 tttgttgaaacttcaaagtgtagcttttgtcaaaatt 353  Q
    ||||||||||||||||||||||| |||||| ||||||    
T  18918834 tttgttgaaacttcaaagtgtagtttttgttaaaatt 18918798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 312 - 375
Target Start/End: Complemental strand, 31695035 - 31694972
Alignment:
Q  312 gtgaatttgttgaaacttcaaagtgtagcttttgtcaaaattgcggtaactcaccgtgattctg 375  Q
    |||| |||||| || || |||||||||||||||| ||||||||  || ||||||||||||||||    
T  31695035 gtgattttgtttaatctccaaagtgtagcttttgccaaaattgaagtgactcaccgtgattctg 31694972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 353
Target Start/End: Original strand, 24751463 - 24751504
Alignment:
Q  312 gtgaatttgttgaaacttcaaagtgtagcttttgtcaaaatt 353  Q
    |||| |||||| ||||||||||||||| ||||||||||||||    
T  24751463 gtgattttgttcaaacttcaaagtgtaacttttgtcaaaatt 24751504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 352
Target Start/End: Original strand, 5413950 - 5413990
Alignment:
Q  312 gtgaatttgttgaaacttcaaagtgtagcttttgtcaaaat 352  Q
    |||| ||||||||| || |||||||||||||||||||||||    
T  5413950 gtgagtttgttgaagctccaaagtgtagcttttgtcaaaat 5413990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 372
Target Start/End: Original strand, 18165130 - 18165190
Alignment:
Q  312 gtgaatttgttgaaacttcaaagtgtagcttttgtcaaaattgcggtaactcaccgtgatt 372  Q
    |||| ||||||||| | ||||| | |||||||||||||||| | |||| ||||||||||||    
T  18165130 gtgattttgttgaaccatcaaattttagcttttgtcaaaatcgaggtagctcaccgtgatt 18165190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 352
Target Start/End: Complemental strand, 46258301 - 46258261
Alignment:
Q  312 gtgaatttgttgaaacttcaaagtgtagcttttgtcaaaat 352  Q
    |||| |||||| || ||||||||||||||||||||||||||    
T  46258301 gtgagtttgtttaaccttcaaagtgtagcttttgtcaaaat 46258261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University