View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11033_low_15 (Length: 371)
Name: NF11033_low_15
Description: NF11033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11033_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 355
Target Start/End: Original strand, 14010558 - 14010895
Alignment:
| Q |
18 |
cacagaatccggtcaattatgcatatgtcttcaacttctctattaacaaacttaggatttatacacacagtgcaagtttttgtttaaatactacaatcca |
117 |
Q |
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| T |
14010558 |
cacagaatccggtcaattatgcatacgtcttcaacttctctattaacaaacttaggatttatacacacagtgcaagtttttgtttaaatactacaatcca |
14010657 |
T |
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| Q |
118 |
atttacagtatatgcgacctgccaatatattttaatcatataaaacatatcactgtattgtcaaatttgttccacttagaactttgcttcaataggtctt |
217 |
Q |
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| T |
14010658 |
atttacagtatatgcgacctgccaatatattttaatcatataaaacatatcactgtattgtcaaatttgttccacttagaacattgcttcaataggtctt |
14010757 |
T |
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| Q |
218 |
aaaagtgaaacaacatttctattgtttgatgtattgccagcttaaagttgaaaaagtcatgacatcttaaattacttgcatttccaacttgtttcgttca |
317 |
Q |
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| T |
14010758 |
aaaagtgaaacaacatttctattgtttgatgtattgccagcttaaagttgaaaaagtcatgacatcttaaattacttgcatttccaacttgtttcgttca |
14010857 |
T |
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| Q |
318 |
tgtgagcttccattgacaacatgaaatgtaggtagagg |
355 |
Q |
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| T |
14010858 |
tgtgagcttccattgacaacatgaaatgcaggtagagg |
14010895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 119 - 355
Target Start/End: Complemental strand, 3883308 - 3883072
Alignment:
| Q |
119 |
tttacagtatatgcgacctgccaatatattttaatcatataaaacatatcactgtattgtcaaatttgttccacttagaactttgcttcaataggtctta |
218 |
Q |
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| T |
3883308 |
tttacagtatatgcgacctgccaatatattttaatcatataaaacatatccctgtattgtcaaatttgttccactttgaactttgcttcaataggtctta |
3883209 |
T |
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| Q |
219 |
aaagtgaaacaacatttctattgtttgatgtattgccagcttaaagttgaaaaagtcatgacatcttaaattacttgcatttccaacttgtttcgttcat |
318 |
Q |
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| T |
3883208 |
aaagtgaaacaacatttctattgtttgatgtattgccagcttaaagttgaaaaagtcatgacatcttaaattacttgcatttccaacttgtttcgttcat |
3883109 |
T |
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| Q |
319 |
gtgagcttccattgacaacatgaaatgtaggtagagg |
355 |
Q |
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| T |
3883108 |
gtgagcttccattgacaacatgaaatgcaggtagagg |
3883072 |
T |
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