View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11033_low_16 (Length: 361)
Name: NF11033_low_16
Description: NF11033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11033_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 9e-89; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 141 - 345
Target Start/End: Original strand, 35181173 - 35181371
Alignment:
| Q |
141 |
tagagctaaaatgaatcactaggtaaatattaattttgaagctacatccatgatacagtcctaaacatttttcatattatgctaaaaggttgagtctccc |
240 |
Q |
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| T |
35181173 |
tagagctaaaattaatcactaggtaaatattaattttgaagctacatccatgatacagtcctaaacatttttcatattatgctaaaaggttgagtctctc |
35181272 |
T |
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| Q |
241 |
tattacacaaagctcaaccgcagagaccactcaagtatgacacaatgatcatcatcactctatagctttcaaagggacaactcgaatggactatagtctg |
340 |
Q |
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| T |
35181273 |
tattacacaaagctcaaccgcagagaccactcaagtatgacacaatg------atcactctatagctttcaaagggacaactcgaagggaatatagtctg |
35181366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 35181057 - 35181175
Alignment:
| Q |
1 |
gagatgaagggaactagaatcccgagtcatctttaaattcaatatccaagtacaacccaacatagtatactcaatgacatactaccaagttgaagaggca |
100 |
Q |
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| T |
35181057 |
gagaggaagggaactagaatcccaagtcatctttaaattcaatatccaagtacaatccaacatagtatactcaatgacatactaccaagttgaagaggca |
35181156 |
T |
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| Q |
101 |
tatgcaatagaatatctag |
119 |
Q |
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| T |
35181157 |
tatgcaatagaatatctag |
35181175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 117 - 227
Target Start/End: Original strand, 35183933 - 35184047
Alignment:
| Q |
117 |
taggcaaaattatacaatttcagttagagctaaaatgaatcac----taggtaaatattaattttgaagctacatccatgatacagtcctaaacattttt |
212 |
Q |
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| T |
35183933 |
taggcaaaattataacatttcagttagaactaaaattaatcacttgttaattaaatattaattttgaagctacatccatgatacagtcctaaacattttt |
35184032 |
T |
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| Q |
213 |
catattatgctaaaa |
227 |
Q |
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| T |
35184033 |
catattatgctaaaa |
35184047 |
T |
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