View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11033_low_19 (Length: 338)
Name: NF11033_low_19
Description: NF11033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11033_low_19 |
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| [»] chr1 (3 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 11 - 338
Target Start/End: Complemental strand, 50087646 - 50087319
Alignment:
| Q |
11 |
cagagaaaagaagagcaaaatacagattagttcatgttgttagaacacataaaggaggtgatgataaagcatataaatgtgtttttgaagaagaagacaa |
110 |
Q |
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| T |
50087646 |
cagagaaaagaagagcaaaatacagattagttcatgttgttagaacacataaaggaggtgatgataaagcatataaatgtgtttttgaagaagaagacaa |
50087547 |
T |
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| Q |
111 |
agaaggtaaagttggaatatcacttcaaaaagatcttatggcaattgcaggtgaagcacttaaatcaaatataacaacaatgggtcctcttgttttacca |
210 |
Q |
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| T |
50087546 |
agaaggtaaagttggaatatcacttcaaaaagatcttatggcaattgcaggtgaagcacttaaatcaaatataacaacaatgggtcctcttgttttacca |
50087447 |
T |
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| Q |
211 |
gcttcagaacaattactttttctaatcacactcattggtagaaaaatctttaaccctaaatggaaaccatatatacctgattttaaacaagcttttgaac |
310 |
Q |
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| T |
50087446 |
gcttcagaacaattactttttctcatcacactcattggtagaaaaatatttaaccctaaatggaaaccatatatacctgattttaaacaagcttttgaac |
50087347 |
T |
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| Q |
311 |
atttttgtatacatgctggtggtcgtgc |
338 |
Q |
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| T |
50087346 |
atttttgtatacatgctggtggtcgtgc |
50087319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 332
Target Start/End: Original strand, 15239433 - 15239491
Alignment:
| Q |
274 |
aaaccatatatacctgattttaaacaagcttttgaacatttttgtatacatgctggtgg |
332 |
Q |
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| T |
15239433 |
aaaccatacattcctgattttaaattagcttttgagcatttttgtattcatgctggtgg |
15239491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 332
Target Start/End: Original strand, 34053144 - 34053190
Alignment:
| Q |
286 |
cctgattttaaacaagcttttgaacatttttgtatacatgctggtgg |
332 |
Q |
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| T |
34053144 |
cctgattttaaattagcttttgagcatttttgtattcatgctggtgg |
34053190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 21 - 338
Target Start/End: Complemental strand, 23271897 - 23271580
Alignment:
| Q |
21 |
aagagcaaaatacagattagttcatgttgttagaacacataaaggaggtgatgataaagcatataaatgtgtttttgaagaagaagacaaagaaggtaaa |
120 |
Q |
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| T |
23271897 |
aagagcaaaatatagattgatgcaagttgttagaactcacaaaggaggtgacgataaagcttaccgttgcgttttcgaagaagaagacagagaaggtaaa |
23271798 |
T |
|
| Q |
121 |
gttggaatatcacttcaaaaagatcttatggcaattgcaggtgaagcacttaaatcaaatataacaacaatgggtcctcttgttttaccagcttcagaac |
220 |
Q |
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| T |
23271797 |
gttggaatttcacttcaaaaggatcttatggctatagcaggagaagcattgaaatcaaatataacaactattggtcctcttgttctacctgcttcagaac |
23271698 |
T |
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| Q |
221 |
aattactttttctaatcacactcattggtagaaaaatctttaaccctaaatggaaaccatatatacctgattttaaacaagcttttgaacatttttgtat |
320 |
Q |
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||||||| ||||| ||||||||||||| | |||||||| ||||||||| ||| || ||||| |||||||| |||||||| ||||| ||||||||||| |
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| T |
23271697 |
aattactctttcttttcacactcattggaaagaaaatcttcaaccctaaaatgaagccttatattcctgatttcaaacaagcgtttgagcatttttgtat |
23271598 |
T |
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| Q |
321 |
acatgctggtggtcgtgc |
338 |
Q |
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| T |
23271597 |
tcatgctggtggacgtgc |
23271580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 88 - 247
Target Start/End: Complemental strand, 33446775 - 33446615
Alignment:
| Q |
88 |
tgtgtttttgaagaagaagacaaagaaggtaaagttggaatatcacttc-aaaaagatcttatggcaattgcaggtgaagcacttaaatcaaatataaca |
186 |
Q |
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||||||||||| |||||||||||||||| |||||||||||| ||| ||| | | ||||||||||||| | ||| |||||| | ||||||||||||| | |
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| T |
33446775 |
tgtgtttttgaggaagaagacaaagaagctaaagttggaatttcatttcgagagtaatcttatggcaatagtaggagaagcattgaaatcaaatataata |
33446676 |
T |
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| Q |
187 |
acaatgggtcctcttgttttaccagcttcagaacaattactttttctaatcacactcattg |
247 |
Q |
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| T |
33446675 |
actattggccatcttgttcttccggtttcaaaacaattgctctttcttttcacacttattg |
33446615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 273 - 332
Target Start/End: Complemental strand, 49041372 - 49041313
Alignment:
| Q |
273 |
gaaaccatatatacctgattttaaacaagcttttgaacatttttgtatacatgctggtgg |
332 |
Q |
| |
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|||||| |||||||| ||||| ||| ||||||||||||||| ||||| ||||||||||| |
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| T |
49041372 |
gaaaccttatataccagatttcaaattagcttttgaacatttctgtattcatgctggtgg |
49041313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 280 - 333
Target Start/End: Original strand, 26453321 - 26453374
Alignment:
| Q |
280 |
tatatacctgattttaaacaagcttttgaacatttttgtatacatgctggtggt |
333 |
Q |
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||||||||||||||||| | |||||||| ||||||||||| |||||||||||| |
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| T |
26453321 |
tatatacctgattttaagcttgcttttgagcatttttgtattcatgctggtggt |
26453374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 26453081 - 26453149
Alignment:
| Q |
40 |
gttcatgttgttagaacacataaaggaggtgatgataaagcatataaatgtgtttttgaagaagaagac |
108 |
Q |
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| T |
26453081 |
gttcatgttgtgaggactcataaaggtgctgatgataaagcatttaagtgtgtttatcaagaacaagac |
26453149 |
T |
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