View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11033_low_2 (Length: 675)

Name: NF11033_low_2
Description: NF11033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11033_low_2
NF11033_low_2
[»] chr5 (1 HSPs)
chr5 (15-657)||(3004392-3005041)
[»] chr4 (4 HSPs)
chr4 (15-391)||(54654663-54655040)
chr4 (443-657)||(54654439-54654664)
chr4 (198-334)||(1065539-1065672)
chr4 (371-437)||(42094340-42094406)
[»] chr3 (5 HSPs)
chr3 (134-439)||(51648950-51649252)
chr3 (373-439)||(8505207-8505273)
chr3 (349-405)||(4866114-4866170)
chr3 (349-405)||(55039881-55039937)
chr3 (516-556)||(49879762-49879802)
[»] chr1 (5 HSPs)
chr1 (134-437)||(20604307-20604611)
chr1 (134-209)||(29310805-29310880)
chr1 (349-432)||(35164380-35164463)
chr1 (349-405)||(30402649-30402705)
chr1 (349-405)||(30409206-30409262)
[»] chr8 (4 HSPs)
chr8 (134-439)||(30847932-30848233)
chr8 (349-405)||(11144349-11144405)
chr8 (349-432)||(1660597-1660680)
chr8 (368-432)||(1599698-1599762)
[»] scaffold0390 (1 HSPs)
scaffold0390 (193-335)||(984-1123)
[»] chr2 (1 HSPs)
chr2 (193-335)||(22140157-22140296)
[»] scaffold0786 (1 HSPs)
scaffold0786 (193-335)||(2452-2591)
[»] chr6 (3 HSPs)
chr6 (507-634)||(6666936-6667074)
chr6 (586-657)||(6781261-6781334)
chr6 (176-215)||(31449287-31449326)
[»] chr7 (1 HSPs)
chr7 (349-405)||(13949966-13950022)


Alignment Details
Target: chr5 (Bit Score: 569; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 15 - 657
Target Start/End: Complemental strand, 3005041 - 3004392
Alignment:
Q  15 cataggtagcaaaccgcaacacatcaccactgccaacacagttgaaccacatcagtctgttgtctgaaaaccgcaccagtcacaaccttaaagctttcgt 114  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  3005041 cataggtagcaaaccgcagcacatcaccactgccaacacagttgaaccacatcagtctgttgtccgaaaaccgcaccagtcacaaccttaaagctttcgt 3004942  T
Q  115 ctcact---aaccacagacaactttctattccattgtcttctgaataagttttacctgaaacaaaaacataattttctataaaattagcatctccaaagg 211  Q
    ||||||   ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3004941 ctcacttataaccacagacaactttctattccattgtcttttgaataagttttacctgaaacaaaaacataattttctataaaattagcatctccaaagg 3004842  T
Q  212 accatctcccaatatttattag-atatgtacatcatcgtcatcacataaagtagtatattgatttgatatcccatggagacacttctttctttcagatgg 310  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  3004841 accacctcccaatatttattaggatatgtacatcatcgtcatcacataaagtagtatattgatttgatatcccatggagacacttctttctttcagatag 3004742  T
Q  311 gattaaatcggcaaacaatgttctcttaatgcaatatcgcagtcaaagaaaactatcttaaaactcaattcatattacttgcaacttgagataatatgaa 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3004741 gattaaatcggcaaacaatgttctcttaatgcaatatcgcagtcaaagaaaactatcttaaaactcaattcatattacttgcaacttgatataatatgaa 3004642  T
Q  411 aatgggagacataatacatgtaaaacagaatgtgatgaagaaggggcaatgcctaaacagatcaagataattgaaaacacaacataaattttcagcaagg 510  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3004641 aatgggagacataatacatgtagaacagaatgtgatgaagaaggggcaatgcctaaacagatcaagataattgaaaacacaacataaattttcagtaagg 3004542  T
Q  511 tggaatactaacctgaacagattgctttttcagacttctaatatgtgtagttatttgataacaattcaatcaagg-aacatcatcatttacttgatcggc 609  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  3004541 tggaatactaacctgaacagattgctttttcagacttctaatatgtttagttatttgataacaattcaatcaaggaaacatcatcatttacttgatcagc 3004442  T
Q  610 atctgtcc--tcctggttgaattcaatcccatcttgtttgtgctctatat 657  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  3004441 atctgtcccgtcctggttgaattcaatcccatcttgtttgtgctctatat 3004392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 15 - 391
Target Start/End: Complemental strand, 54655040 - 54654663
Alignment:
Q  15 cataggtagcaaaccgcaacacatcaccactgccaacacagttgaaccacatcagtctgttgtctgaaaaccgcaccagtcacaaccttaaagctttcgt 114  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||    
T  54655040 cataggtagcaaaccgcagcacatcaccactgccaacacagttgaaccacaacagtctgctgtctgaaaaccgcactagtcacaaccttaaagctttcgt 54654941  T
Q  115 ctcactaaccacagacaactttctattccattgtcttctgaataagttttacctgaaacaaaaacataattttctataaaattagcatctccaaaggacc 214  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  54654940 ctcactaaccacagacagctttgtattccattgtcttctgaataagttttacctgaaacaaaaacataattttttataaaattagcatctccaaaggacc 54654841  T
Q  215 atctcccaatatttatta-gatatgtacatcatcgtcatcacataaagtagtatattgatttgatatcccatggagacacttctttctttcagatgggat 313  Q
    | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54654840 acctcccaatatttattaggatatgtacatcatcgtcatcacataaagtagtatattgatttgatatcccatggagacacttctttctttcagatgggat 54654741  T
Q  314 taaatcggcaaacaatgttctcttaatgcaatatcgcagtcaaagaaaactatcttaaaactcaattcatattacttg 391  Q
    ||||||| |||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  54654740 taaatcgacaaacaatgttctcttgatacaatatcgtagtcaaagaaaactatcttaaaactcaattcatattacttg 54654663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 443 - 657
Target Start/End: Complemental strand, 54654664 - 54654439
Alignment:
Q  443 tgatgaagaaggggcaatgcctaaacagatcaagataattgaaaacacaacataaattttcagcaaggtggaatactaacctgaacagattgctttttca 542  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  54654664 tgatgaagaaggggcaaggcctaaacagatcaagataattgaaaacacaacataaattttcaggaaggaggaatactaacctgaacagattgctttttca 54654565  T
Q  543 gacttctaatatgtgtagttatttgat--------aacaattcaatcaagg-aacatcatcatttacttgatcggcatctgt--cctcctggttgaattc 631  Q
    ||||||||||||||  |||||||| ||        |||||||||||||||| ||||||||||||  ||||||| ||||||||  ||||||||||||||||    
T  54654564 gacttctaatatgttcagttatttaatcatgtgtgaacaattcaatcaaggaaacatcatcattgtcttgatcagcatctgtcccctcctggttgaattc 54654465  T
Q  632 aatcccatcttgtttgtgctctatat 657  Q
    ||||||||||||||||||||||||||    
T  54654464 aatcccatcttgtttgtgctctatat 54654439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 198 - 334
Target Start/End: Original strand, 1065539 - 1065672
Alignment:
Q  198 agcatctccaaaggaccatctcccaatatttattag-atatgtacatcatcgtcatcacataaagtagtatattgatttgatatcccatggagacacttc 296  Q
    |||||||||| | ||||| |||| |||||| ||||| ||||||| ||  || |||||||| ||| |||||||||||||| ||||||||  ||||||||||    
T  1065539 agcatctccacaagaccacctccaaatattaattaggatatgtatatagtcatcatcacaaaaaatagtatattgatttcatatcccaaagagacacttc 1065638  T
Q  297 tttctttcagatgggattaaatcggcaaacaatgttct 334  Q
    |||     ||||||||| ||||||||||||| ||||||    
T  1065639 tttt----agatgggatcaaatcggcaaacattgttct 1065672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 371 - 437
Target Start/End: Original strand, 42094340 - 42094406
Alignment:
Q  371 aaactcaattcatattacttgcaacttgagataatatgaaaatgggagacataatacatgtaaaaca 437  Q
    |||||||||| | |||||||||||||||| ||||||||||||||| |||||| ||||||||| ||||    
T  42094340 aaactcaatttaaattacttgcaacttgaaataatatgaaaatggaagacattatacatgtagaaca 42094406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 134 - 439
Target Start/End: Complemental strand, 51649252 - 51648950
Alignment:
Q  134 tttctattccattgtcttctgaataagttttacctgaaacaaaaacataattttctataaaattagcatctccaaaggaccatctcccaatatttattag 233  Q
    |||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||  |||||| |||||    
T  51649252 tttctatgtcattgtcttctaaataagttttacctgaaacaaaaacataattttctataaaatttgcatctccaaaggaccacctctaaatattaattag 51649153  T
Q  234 -atatgtacat---catcgtcatcacataaagtagtatattgatttgatatcccatggagacacttctttctttcagatgggattaaatcggcaaacaat 329  Q
     ||||||||||   |||| ||||||||||   |||||||||||||||||||||||||||||||||||||||    ||||||||| |||||||||||||||    
T  51649152 gatatgtacatgatcatcatcatcacata---tagtatattgatttgatatcccatggagacacttctttc----agatgggatcaaatcggcaaacaat 51649060  T
Q  330 gttctcttaatgcaatatcgcagtcaaagaaaactatcttaaaactcaattcatattacttgcaacttgagataatatgaaaatgggagacataatacat 429  Q
    ||||||| |||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||    
T  51649059 gttctctaaatgcaattttgcagtcaaagaaaaccatcttaaaactcaattcatattacttgcaacttgaaatcgtatgaaaatgggagacataatacat 51648960  T
Q  430 gtaaaacaga 439  Q
    ||| ||||||    
T  51648959 gtagaacaga 51648950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 373 - 439
Target Start/End: Original strand, 8505207 - 8505273
Alignment:
Q  373 actcaattcatattacttgcaacttgagataatatgaaaatgggagacataatacatgtaaaacaga 439  Q
    ||||||||||||||||||||||||||| ||  ||||||||| ||||||||||||||| || ||||||    
T  8505207 actcaattcatattacttgcaacttgaaatcgtatgaaaataggagacataatacatatagaacaga 8505273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 349 - 405
Target Start/End: Complemental strand, 4866170 - 4866114
Alignment:
Q  349 gcagtcaaagaaaactatcttaaaactcaattcatattacttgcaacttgagataat 405  Q
    ||||||||||||||||| |||||||||||||| | ||||||||||| |||| |||||    
T  4866170 gcagtcaaagaaaactaccttaaaactcaatttaaattacttgcaatttgaaataat 4866114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 349 - 405
Target Start/End: Original strand, 55039881 - 55039937
Alignment:
Q  349 gcagtcaaagaaaactatcttaaaactcaattcatattacttgcaacttgagataat 405  Q
    ||||||||||||||||| |||||||||||||| | ||||||||||| |||| |||||    
T  55039881 gcagtcaaagaaaactaccttaaaactcaatttaaattacttgcaatttgaaataat 55039937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 516 - 556
Target Start/End: Complemental strand, 49879802 - 49879762
Alignment:
Q  516 tactaacctgaacagattgctttttcagacttctaatatgt 556  Q
    |||||||||||||||||| |||| ||||||| |||||||||    
T  49879802 tactaacctgaacagattcctttctcagactactaatatgt 49879762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 171; Significance: 2e-91; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 134 - 437
Target Start/End: Complemental strand, 20604611 - 20604307
Alignment:
Q  134 tttctattccattgtcttctgaataagttttacctgaaacaaaaacataattttctataaaattagcatctccaaaggaccatctcccaatatttattag 233  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||  |||||| |||||    
T  20604611 tttctatgccattgtcttctaaataagttttacctgaaacaaaaacataattttctataaaatttgcatctccaaaggaccacctctaaatattaattag 20604512  T
Q  234 -atatgtacat-------catcgtcatcacataaagtagtatattgatttgatatcccatggagacacttctttctttcagatgggattaaatcggcaaa 325  Q
     ||||||||||       |||| ||||||||||   |||||||||||||||||||||||||||||| ||||||||    ||||||||| |||||| ||||    
T  20604511 gatatgtacatgcatgatcatcatcatcacata---tagtatattgatttgatatcccatggagacgcttctttc----agatgggatcaaatcgacaaa 20604419  T
Q  326 caatgttctcttaatgcaatatcgcagtcaaagaaaactatcttaaaactcaattcatattacttgcaacttgagataatatgaaaatgggagacataat 425  Q
    ||||||||||| |||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||    
T  20604418 caatgttctctaaatgcaattttgcagtcaaagaaaaccatcttaaaactcaattcatattacttgcaacttgaaatcgtatgaaaatgggagacataat 20604319  T
Q  426 acatgtaaaaca 437  Q
    ||||||| ||||    
T  20604318 acatgtagaaca 20604307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 134 - 209
Target Start/End: Complemental strand, 29310880 - 29310805
Alignment:
Q  134 tttctattccattgtcttctgaataagttttacctgaaacaaaaacataattttctataaaattagcatctccaaa 209  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  29310880 tttctattccattgtcttttaaataagttttacctgaaacaaaaacataattttctataaaatttgcatctccaaa 29310805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 349 - 432
Target Start/End: Complemental strand, 35164463 - 35164380
Alignment:
Q  349 gcagtcaaagaaaactatcttaaaactcaattcatattacttgcaacttgagataatatgaaaatgggagacataatacatgta 432  Q
    ||||||||||||||||| |||||||||||||| | ||||||||||| |||| |||||  ||| |||| | |||| |||||||||    
T  35164463 gcagtcaaagaaaactaccttaaaactcaatttaaattacttgcaatttgaaataattcgaatatggaaaacattatacatgta 35164380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 349 - 405
Target Start/End: Original strand, 30402649 - 30402705
Alignment:
Q  349 gcagtcaaagaaaactatcttaaaactcaattcatattacttgcaacttgagataat 405  Q
    ||||||||||||||||| |||||||||||||| | ||||||||||| |||| |||||    
T  30402649 gcagtcaaagaaaactaccttaaaactcaatttaaattacttgcaatttgaaataat 30402705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 349 - 405
Target Start/End: Original strand, 30409206 - 30409262
Alignment:
Q  349 gcagtcaaagaaaactatcttaaaactcaattcatattacttgcaacttgagataat 405  Q
    ||||||||||||||||| |||||||||||||| | ||||||||||| |||| |||||    
T  30409206 gcagtcaaagaaaactaccttaaaactcaatttaaattacttgcaatttgaaataat 30409262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 169; Significance: 3e-90; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 134 - 439
Target Start/End: Original strand, 30847932 - 30848233
Alignment:
Q  134 tttctattccattgtcttctgaataagttttacctgaaacaaaaacataattttctataaaattagcatctccaaaggaccatctcccaatatttattag 233  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||| || ||| |||||    
T  30847932 tttctattccattgtcttctaaattagttttacctgaaacaaaaacataattttctataaaatttgc-tctccaaaggaccacctccaaaaattaattag 30848030  T
Q  234 -atatgtacatcatcgt---catcacataaagtagtatattgatttgatatcccatggagacacttctttctttcagatgggattaaatcggcaaacaat 329  Q
     |||||||||||||| |   |||||||||   |||||||||||||||||||||  |||||||||||||||     ||||||||| |||||||||||||||    
T  30848031 gatatgtacatcatcataatcatcacata---tagtatattgatttgatatcctgtggagacacttctttt----agatgggatcaaatcggcaaacaat 30848123  T
Q  330 gttctcttaatgcaatatcgcagtcaaagaaaactatcttaaaactcaattcatattacttgcaacttgagataatatgaaaatgggagacataatacat 429  Q
    ||||||| | |||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  30848124 gttctctaattgcaattttgcagtcaaagaaaaccatcttaaaactcaattcatattacttgcaacttgaaatcatatgaaaatgggagacataatacat 30848223  T
Q  430 gtaaaacaga 439  Q
    ||| ||||||    
T  30848224 gtagaacaga 30848233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 349 - 405
Target Start/End: Complemental strand, 11144405 - 11144349
Alignment:
Q  349 gcagtcaaagaaaactatcttaaaactcaattcatattacttgcaacttgagataat 405  Q
    ||||||||||||||||| |||||||||||||| | ||||||||||| |||| |||||    
T  11144405 gcagtcaaagaaaactaccttaaaactcaatttaaattacttgcaatttgaaataat 11144349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 349 - 432
Target Start/End: Original strand, 1660597 - 1660680
Alignment:
Q  349 gcagtcaaagaaaactatcttaaaactcaattcatattacttgcaacttgagataatatgaaaatgggagacataatacatgta 432  Q
    ||||||||||||||||| |||||||||||||| | ||||||||||| || | |||||  ||| |||| | |||| |||||||||    
T  1660597 gcagtcaaagaaaactaccttaaaactcaatttaaattacttgcaatttaaaataattcgaatatggaaaacattatacatgta 1660680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 368 - 432
Target Start/End: Original strand, 1599698 - 1599762
Alignment:
Q  368 ttaaaactcaattcatattacttgcaacttgagataatatgaaaatgggagacataatacatgta 432  Q
    ||||||||||||| | ||||||||||| |||| |||||  ||| |||| |||||| |||||||||    
T  1599698 ttaaaactcaatttaaattacttgcaatttgaaataattcgaatatggaagacattatacatgta 1599762  T

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Target: scaffold0390 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0390
Description:

Target: scaffold0390; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 193 - 335
Target Start/End: Complemental strand, 1123 - 984
Alignment:
Q  193 aaattagcatctccaaaggaccatctcccaatatttattag-atatgtacatcatcgtcatcacataaagtagtatattgatttgatatcccatggagac 291  Q
    |||| |||||||||||||||||| |||| |||||| ||||| ||||||| ||  || |||||||| ||||| |||||||||||| ||||||||  |||||    
T  1123 aaataagcatctccaaaggaccacctccaaatattaattaggatatgtatatagtcatcatcacaaaaagttgtatattgatttcatatcccaaagagac 1024  T
Q  292 acttctttctttcagatgggattaaatcggcaaacaatgttctc 335  Q
    |||||    ||||||||||||| ||||||||||||| |||||||    
T  1023 acttc----tttcagatgggatcaaatcggcaaacattgttctc 984  T

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Target: chr2 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 193 - 335
Target Start/End: Original strand, 22140157 - 22140296
Alignment:
Q  193 aaattagcatctccaaaggaccatctcccaatatttattag-atatgtacatcatcgtcatcacataaagtagtatattgatttgatatcccatggagac 291  Q
    |||| |||||||||||||||||| |||| |||||| ||||| ||||||| ||  || |||||||| ||||| |||||||||||| ||||||||  |||||    
T  22140157 aaataagcatctccaaaggaccacctccaaatattaattaggatatgtatatagtcatcatcacaaaaagttgtatattgatttcatatcccaaagagac 22140256  T
Q  292 acttctttctttcagatgggattaaatcggcaaacaatgttctc 335  Q
    |||||||||     |||||||| ||||||||||||| |||||||    
T  22140257 acttctttcg----gatgggatcaaatcggcaaacattgttctc 22140296  T

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Target: scaffold0786 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: scaffold0786
Description:

Target: scaffold0786; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 193 - 335
Target Start/End: Complemental strand, 2591 - 2452
Alignment:
Q  193 aaattagcatctccaaaggaccatctcccaatatttattag-atatgtacatcatcgtcatcacataaagtagtatattgatttgatatcccatggagac 291  Q
    |||| |||||||||||||||||| |||| || ||| ||||| ||||||| ||  || |||||||| ||||| |||||||||||| ||||||||  |||||    
T  2591 aaataagcatctccaaaggaccacctccaaagattaattaggatatgtatatagtcatcatcacaaaaagttgtatattgatttcatatcccaatgagac 2492  T
Q  292 acttctttctttcagatgggattaaatcggcaaacaatgttctc 335  Q
    |||||    ||||||||||||| ||||||| ||||| |||||||    
T  2491 acttc----tttcagatgggatcaaatcggaaaacattgttctc 2452  T

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Target: chr6 (Bit Score: 51; Significance: 7e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 507 - 634
Target Start/End: Complemental strand, 6667074 - 6666936
Alignment:
Q  507 aaggtggaatactaacctgaacagattgctttttcagacttctaatatgtgtagttatttgat--------aacaattcaatcaagg-aacatcatcatt 597  Q
    |||||||  |||||||||||||||||||||||||||||||| ||||||||   ||||||||||        ||||  |||||||||| ||||||||||||    
T  6667074 aaggtggtgtactaacctgaacagattgctttttcagacttgtaatatgttcggttatttgatcatgtgtgaacatatcaatcaaggaaacatcatcatt 6666975  T
Q  598 tacttgatcggcatctgt--cctcctggttgaattcaat 634  Q
     |||||||||||||||||  |||||||||||||| ||||    
T  6666974 aacttgatcggcatctgtcccctcctggttgaatccaat 6666936  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 586 - 657
Target Start/End: Original strand, 6781261 - 6781334
Alignment:
Q  586 aacatcatcatttacttgatcggcatctgtcc--tcctggttgaattcaatcccatcttgtttgtgctctatat 657  Q
    |||| |||||||||||||||| ||||||||||  ||||||||||||||||| ||||||||||||||||| ||||    
T  6781261 aacagcatcatttacttgatcagcatctgtcccctcctggttgaattcaattccatcttgtttgtgctcgatat 6781334  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 176 - 215
Target Start/End: Complemental strand, 31449326 - 31449287
Alignment:
Q  176 aaacataattttctataaaattagcatctccaaaggacca 215  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  31449326 aaacataattttctataaaattagcatctccaaaggacca 31449287  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 349 - 405
Target Start/End: Complemental strand, 13950022 - 13949966
Alignment:
Q  349 gcagtcaaagaaaactatcttaaaactcaattcatattacttgcaacttgagataat 405  Q
    ||||||||||||||||| |||||||||||||| | ||||||||||| |||| |||||    
T  13950022 gcagtcaaagaaaactaccttaaaactcaatttaaattacttgcaatttgaaataat 13949966  T

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