View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11033_low_22 (Length: 309)
Name: NF11033_low_22
Description: NF11033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11033_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 7 - 294
Target Start/End: Complemental strand, 29038945 - 29038658
Alignment:
| Q |
7 |
ctctgccagaatttgagtttaaagaactttctacatctccactttactcaaatggtgcaatccattgggaaatatgtggatacttattggtgtatcatgt |
106 |
Q |
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| T |
29038945 |
ctctgccagaattcgagtttaaagaactttctacatctccactttactcaaatggtgcaatccattgggaaatatgtggatacttattggtgtatcatgt |
29038846 |
T |
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| Q |
107 |
ccaagaaaactattgtgagctaattgagatgcctaannnnnnncaagactggtcatggcaattgacgatgatgtatcgtcgatgtttgtgcgaatcagga |
206 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
29038845 |
ccaagaaaactattgtgagctaattgagatgcctaatttttttcaagactggtcatggcaatcaacaatgatgtatcgtcgatgtttgtgcgaatcagga |
29038746 |
T |
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| Q |
207 |
aaccgtgtttactattgttacactgatattgatggtttccacatttgggaacttctgaaggagaattataatcttgggccattctgtg |
294 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29038745 |
aacagtgtttactattgttacactgatattgatggtttccacatttgggaacttctgaaggagaattataatcttgggccattctgtg |
29038658 |
T |
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