View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11033_low_23 (Length: 297)
Name: NF11033_low_23
Description: NF11033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11033_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 43546190 - 43545914
Alignment:
| Q |
1 |
gtatctgttgatacgaattgaggtattttcttctttgccattggagtccatttttgcgtcactaaggagattgaaactgtcgaatgaaactcaatagtga |
100 |
Q |
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| T |
43546190 |
gtatctgttgatacgaattgaggtattttcttctttgccattggagtccatttttccgtcactaaggagattgaaactgtcgaatgaaactcaatagtga |
43546091 |
T |
|
| Q |
101 |
atcacataaataaataaaactcatttaatgaaattcatgaacattaataagttagataccaaagaagat-aagtggtcgaaacctccttattaaattcaa |
199 |
Q |
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|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
43546090 |
atcatataaataaataaaactcctttaatgaaattcatgaacattaataagttagataccaaagaagataaagtggtcgaaacctccttattaaattcaa |
43545991 |
T |
|
| Q |
200 |
taagttgagattctagacttgtgagatacagttactggttatggtttcaacttgtcagtcgccactttactaatata |
276 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
43545990 |
taagttgagattctagacttgtgagatacagttactggttatggtttcaacttgtgagtcgccactttactaatata |
43545914 |
T |
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