View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11033_low_25 (Length: 292)
Name: NF11033_low_25
Description: NF11033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11033_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 13147864 - 13148130
Alignment:
| Q |
18 |
ttattaaatttgtttactttttgtcttctcaaaaacataccgatctcactcgattcatcttgagatattctagtttattcatgtaactcatgcacatttt |
117 |
Q |
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| T |
13147864 |
ttattaaatttatttaccttttgtcttctcaaaaacataccgatctcactcgattcatcttgagatattctagtttattcatgtaactcatgcacatttt |
13147963 |
T |
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| Q |
118 |
gagagaatacgaaactttgcaatatatgcttgctttcctgtaaattaattgaagaacttgatggaaaaatttcaaactcagagttcatcagttgaaattc |
217 |
Q |
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| T |
13147964 |
gagagaatacgaaactttgcaatatatgcttgctttcctgtaaattaattgaagaacttgatggaaaaatttcaaactcagagttcatcagttgaaattc |
13148063 |
T |
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| Q |
218 |
aagaacattataaagcatatcacaggttattacaacctttaccttccttcttccttttgttcatctc |
284 |
Q |
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| T |
13148064 |
aagaacattataaagcatatcacaggttattacaacctttaccttccttcttccttttgttcatctc |
13148130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 13101309 - 13101373
Alignment:
| Q |
158 |
taaattaattgaagaacttgatggaaaaatttcaaactcagagttcatcagttgaaattcaagaa |
222 |
Q |
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| T |
13101309 |
taaactaattgaattatttgatcgaaaaacttcaaagtcaaagttcatcagttgagattcaagaa |
13101373 |
T |
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