View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11033_low_29 (Length: 255)
Name: NF11033_low_29
Description: NF11033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11033_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 11806810 - 11807061
Alignment:
| Q |
1 |
tccatccttcaccagttgtgcgagatgttccaagccctcgcctttgacagttacaaaatatggtaccaactgtttcttcgaaaatttaagttttttcagc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
11806810 |
tccatccttcaccagttgtgcgagatgttccaagccctcacgtttgacagttacaaaatatggtaccaactgtttcttcgaaaatgtaagtttcttcagc |
11806909 |
T |
|
| Q |
101 |
tcaaaagtcaacattgaattcagaccagttgctaaatccacgacaatcccattttcactcaaattaggatcaaaagttgaccatggtattccagcggtac |
200 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11806910 |
tcaaaagtcaacattgaactcagaccagttgctaaatccacgacaatcccattttcactcaaattaggatcaaaagttgaccatggtattccagcggtaa |
11807009 |
T |
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| Q |
201 |
aatttatcactgcatcatatttcctaccagacggactcttctgtgctgctcc |
252 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
11807010 |
aatttatcactgcatcatatttcctaccagacggactcttcagtgatgctcc |
11807061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 11838082 - 11838322
Alignment:
| Q |
1 |
tccatccttcaccagttgtgcgagatgttccaagccctcgcctttgacagttacaaaatatggtaccaactgtttcttcgaaaatttaagttttttcagc |
100 |
Q |
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|||||||||||| ||||| || ||||||||||||||||| | || |||||||||| | |||| |||||| | ||||||||||| ||||||| ||||| |
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| T |
11838082 |
tccatccttcactagttgagcaagatgttccaagccctcacgcttaacagttacaacaaatggcaccaaccgcttcttcgaaaaagtaagtttcttcagt |
11838181 |
T |
|
| Q |
101 |
tcaaaagtcaacattgaattcagaccagttgctaaatccacgacaatcccattttcactcaaattaggatcaaaagttgaccatggtattccagcggtac |
200 |
Q |
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||||||||||||||||| | |||||| || |||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||| ||| | |
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| T |
11838182 |
gcaaaagtcaacattgaactaggaccaggtgttaaatccacgacaactcctttttcactcaaattaggatcaaaagttgaccacggtattccagtggtgc |
11838281 |
T |
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| Q |
201 |
aatttatcactgcatcatatttcctaccagacggactcttc |
241 |
Q |
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||| ||| |||||||||||||| ||||||| ||||||||| |
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| T |
11838282 |
aatgtattactgcatcatattttttaccagatggactcttc |
11838322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 133 - 252
Target Start/End: Original strand, 11430537 - 11430656
Alignment:
| Q |
133 |
taaatccacgacaatcccattttcactcaaattaggatcaaaagttgaccatggtattccagcggtacaatttatcactgcatcatatttcctaccagac |
232 |
Q |
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|||||| || ||||| |||||||| ||||||| || |||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||| |
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| T |
11430537 |
taaatctacaacaattccattttctgtcaaatttggttcaaaagttgaccatggtattccagcagtacaatgtattactgcatcatatttcctaccagat |
11430636 |
T |
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| Q |
233 |
ggactcttctgtgctgctcc |
252 |
Q |
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||||||||| ||| |||||| |
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| T |
11430637 |
ggactcttcagtgatgctcc |
11430656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 133 - 252
Target Start/End: Complemental strand, 11564929 - 11564810
Alignment:
| Q |
133 |
taaatccacgacaatcccattttcactcaaattaggatcaaaagttgaccatggtattccagcggtacaatttatcactgcatcatatttcctaccagac |
232 |
Q |
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|||||| || ||||| |||||||| ||||||| || |||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||| |
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| T |
11564929 |
taaatctacaacaattccattttctgtcaaatttggttcaaaagttgaccatggtattccagcagtacaatgtattactgcatcatatttcctaccagat |
11564830 |
T |
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| Q |
233 |
ggactcttctgtgctgctcc |
252 |
Q |
| |
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||||||||| ||| |||||| |
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| T |
11564829 |
ggactcttcagtgatgctcc |
11564810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 69 - 237
Target Start/End: Original strand, 11855422 - 11855590
Alignment:
| Q |
69 |
actgtttcttcgaaaatttaagttttttcagctcaaaagtcaacattgaattcagaccagttgctaaatccacgacaatcccattttcactcaaattagg |
168 |
Q |
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|||| ||||||||||| ||||||| |||| | |||||||| ||||||| || | |||| || || |||| | |||| ||||||||| ||||||||| |
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| T |
11855422 |
actgcttcttcgaaaaggtaagtttcttcaccgcaaaagtccacattgatctcgggccaggtgttatatccgctacaaccccattttccgacaaattagg |
11855521 |
T |
|
| Q |
169 |
atcaaaagttgaccatggtattccagcggtacaatttatcactgcatcatatttcctaccagacggact |
237 |
Q |
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|||||| |||||||||||||||||| ||||||| ||||||| ||||||||||||||||||| ||||| |
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| T |
11855522 |
ctcaaaaactgaccatggtattccagcagtacaatgtatcactacatcatatttcctaccagaaggact |
11855590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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