View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11033_low_3 (Length: 593)
Name: NF11033_low_3
Description: NF11033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11033_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 1 - 575
Target Start/End: Original strand, 44199187 - 44199758
Alignment:
| Q |
1 |
caacgcaatgtagctacagaatgtgacacatagttctgggccttcggcttaccagcagctaccgttatatcaacagctacttcctctgcaacagaggcct |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
44199187 |
caacgcaatgtagctgcagaatgtgacacatagttctgggccttcggcttaccagcagctaccgttatatcaacagctacttcctctgcaacagagtcct |
44199286 |
T |
|
| Q |
101 |
taccttgttccacaacttgttgatggtcaccagaaaaggtagggctaagagggattgccgagacaccatctatgacaagtatgcatgttgattagagaaa |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44199287 |
taccaagttccacaacttgttgatggtcaccagaaaaggtagggctaagagggtttgctgagacaccatctatgacaagtatgcatgttgattagagaaa |
44199386 |
T |
|
| Q |
201 |
atgggtaaataaatagcattggaataagaagaaaagnnnnnnngcagcactaatttttccatgtggtgggaaatgggagcctatgtagcatgcaatgtat |
300 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44199387 |
acgggtaaataaatagcattggaataagaagaaaagaaaaaaagcagcactaatttttccatgtggtgggaaatgggagcctatgtagcatgcaatgtat |
44199486 |
T |
|
| Q |
301 |
aagagtaactgaagaaagagtgtaaagaataacacagactgtaattacactctgcagtgttcctacaatttaaccagatatgttgaaaattaacttaaaa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44199487 |
aagagtaactgaagaaagagtgtaaagaata--acagactgtaattacactctgcagtgttcctacaatttaaccagatatgttgaaaattaacttaaaa |
44199584 |
T |
|
| Q |
401 |
aacatggtatagtgtacaaacaattaagctataggtttcatcctccagttagatatgttttagtccagacacctttcataaaaaggggctagagattttt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44199585 |
aacatggtatagtgtacaaacaattaagctataggtttcaccctccagttagatatg-tttagtccagacacctttcataaaaaggggctagagattttt |
44199683 |
T |
|
| Q |
501 |
tgtcccaattgtctacaaagtcataaattgggaaaactacattgaaactagaaatgacaggtattctaatatccc |
575 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44199684 |
tgtcccaattgtctacaaagtcataaattgggaaaactacattgaaactagaaatgacaggtattctaatatccc |
44199758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University