View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11033_low_32 (Length: 242)
Name: NF11033_low_32
Description: NF11033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11033_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 2926280 - 2926493
Alignment:
| Q |
18 |
cttaatgcatcaacttcagacttaaactccttttcttgtttgtgacttgcatgaatacattgtttaacagcaatcttgtatccaagaatctctcctttgt |
117 |
Q |
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| T |
2926280 |
cttaatgcatcaacttcagacttaaactccttttcttgtttgtgacttgcatgaatacattgtttaacagcaatcttgtatccaagaatctctcctttgt |
2926379 |
T |
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| Q |
118 |
agacagaaccaaatccaccttctgatagaaagttctttgcagaaaatccttgtgttgctgcatataattcagcatatgtgaactcnnnnnnngtccaatc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2926380 |
agacagaaccaaatccaccttctgatagaaagttctttgcagaaaatccttgtgttgctgcatataattcagcatatgtgaactctttttttgtccaatc |
2926479 |
T |
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| Q |
218 |
aagttttggtctct |
231 |
Q |
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|||||||||||||| |
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| T |
2926480 |
aagttttggtctct |
2926493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 110 - 172
Target Start/End: Original strand, 2971265 - 2971327
Alignment:
| Q |
110 |
tcctttgtagacagaaccaaatccaccttctgatagaaagttctttgcagaaaatccttgtgt |
172 |
Q |
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||||||||||||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
2971265 |
tcctttgtagacagatccaaacccaccttctgacagaaagttcttggcagaaaatccttgtgt |
2971327 |
T |
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