View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11033_low_33 (Length: 241)

Name: NF11033_low_33
Description: NF11033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11033_low_33
NF11033_low_33
[»] chr3 (3 HSPs)
chr3 (1-223)||(17664394-17664616)
chr3 (1-223)||(19246797-19247019)
chr3 (1-223)||(23331911-23332133)
[»] chr2 (2 HSPs)
chr2 (1-221)||(33138440-33138666)
chr2 (167-216)||(18558744-18558792)
[»] chr1 (16 HSPs)
chr1 (167-223)||(34309468-34309524)
chr1 (123-220)||(35147477-35147574)
chr1 (167-223)||(35190482-35190538)
chr1 (168-220)||(35270558-35270610)
chr1 (146-220)||(35263133-35263207)
chr1 (167-220)||(35276656-35276709)
chr1 (167-223)||(35295849-35295905)
chr1 (176-223)||(35476421-35476468)
chr1 (167-223)||(45525583-45525639)
chr1 (1-40)||(34309705-34309744)
chr1 (1-40)||(35200240-35200279)
chr1 (177-224)||(35205027-35205074)
chr1 (176-223)||(35212085-35212132)
chr1 (169-223)||(35225032-35225086)
chr1 (3-37)||(45525799-45525833)
chr1 (1-38)||(35248598-35248635)


Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 17664394 - 17664616
Alignment:
Q  1 ccccaaatactcagtatgcagcttatctcgtcttcaagataatcgatgcccgtggaagtaagaacgaacgcgtgaacttttctgtcggtgtcagtggtgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17664394 ccccaaatactcagtatgcagcttatctcgtcttcaagataattgatgcccgtggaagtaagaacgaacgcgtgaacttttctgtcggtgtcagtggtgg 17664493  T
Q  101 ccacagaagcattaaatctgtttgtttggatccaaacttggaacataggcagcacaacaacgaagcaggattgcaacgtcctagtgttagatgtgatgga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17664494 ccacagaagcattaaatctgtttgtttggatccaaacttggaacataggcagcacaacaacgaagcaggattgcaacgtcctagtgttagatgtgatgga 17664593  T
Q  201 tggttggagattgagatgggaga 223  Q
    |||||||||||||||||||||||    
T  17664594 tggttggagattgagatgggaga 17664616  T

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Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 19246797 - 19247019
Alignment:
Q  1 ccccaaatactcagtatgcagcttatctcgtcttcaagataatcgatgcccgtggaagtaagaacgaacgcgtgaacttttctgtcggtgtcagtggtgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  19246797 ccccaaatactcagtatgcagcttatctcgtcttcaagataattgatgcctgtggaagtaagaacgaacccgtgaacttttctgtcggtgtcagtggtgg 19246896  T
Q  101 ccacagaagcattaaatctgtttgtttggatccaaacttggaacataggcagcacaacaacgaagcaggattgcaacgtcctagtgttagatgtgatgga 200  Q
    | ||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  19246897 caacagaagtattaaatctgtttgtttggatccaaacttggaacataggacgcacaacaacgaagcaggattgcaacgtcctagtgttagatgtgatgga 19246996  T
Q  201 tggttggagattgagatgggaga 223  Q
    |||||||||||||||||||||||    
T  19246997 tggttggagattgagatgggaga 19247019  T

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Target: chr3; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 23332133 - 23331911
Alignment:
Q  1 ccccaaatactcagtatgcagcttatctcgtcttcaagataatcgatgcccgtggaagtaagaacgaacgcgtgaacttttctgtcggtgtcagtggtgg 100  Q
    ||||||||||||||||||||||||| ||||| || ||||||||  |||||| ||||  |  ||||||||  |||| ||||| ||  ||||||  ||||||    
T  23332133 ccccaaatactcagtatgcagcttacctcgtgtttaagataatttatgcccatggatatgtgaacgaacctgtgagcttttttgatggtgtcgatggtgg 23332034  T
Q  101 ccacagaagcattaaatctgtttgtttggatccaaacttggaacataggcagcacaacaacgaagcaggattgcaacgtcctagtgttagatgtgatgga 200  Q
    |||  ||||||||||||| |||||||||||||||||| || ||||||  | | ||||||| |||| || |||||| ||||||| ||| ||| | |||||     
T  23332033 ccatcgaagcattaaatccgtttgtttggatccaaacatgaaacataatccgtacaacaaagaagaagaattgcatcgtcctaatgtgagaagcgatggg 23331934  T
Q  201 tggttggagattgagatgggaga 223  Q
    |||||||||||||||||||||||    
T  23331933 tggttggagattgagatgggaga 23331911  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 33138440 - 33138666
Alignment:
Q  1 ccccaaatactcagtatgcagcttatctcgtcttcaagataatcgatgcccgtggaagtaagaacgaacgcgtgaacttttctgtcggtgtcagtggtgg 100  Q
    |||||||||||||||| || ||||||||||| |||||||| ||| |||||  ||||   |||||| ||| ||||  ||||  ||| |||||   |||||     
T  33138440 ccccaaatactcagtacgcggcttatctcgtgttcaagatgatccatgcctatggacaaaagaacaaacccgtgtgctttaatgttggtgttgatggtga 33138539  T
Q  101 ccacagaagcattaaatctgtttgtttggatccaaacttggaacataggcag------cacaacaacgaagcaggattgcaacgtcctagtgttagatgt 194  Q
    ||  |||||| ||||||| ||||||||||||||| ||||||||||| ||| |      ||| |||| |||| ||||||||| ||||||| ||| ||| ||    
T  33138540 ccgtagaagcgttaaatccgtttgtttggatccagacttggaacattggcggaagtcgcactacaatgaagaaggattgcagcgtcctactgtgagaagt 33138639  T
Q  195 gatggatggttggagattgagatggga 221  Q
    ||||| |||||||||||||||||||||    
T  33138640 gatgggtggttggagattgagatggga 33138666  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 18558744 - 18558792
Alignment:
Q  167 aggattgcaacgtcctagtgttagatgtgatggatggttggagattgaga 216  Q
    |||||||||| |||||||||| ||| ||||||| ||||||||||||||||    
T  18558744 aggattgcaa-gtcctagtgtgagacgtgatgggtggttggagattgaga 18558792  T

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Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 34309524 - 34309468
Alignment:
Q  167 aggattgcaacgtcctagtgttagatgtgatggatggttggagattgagatgggaga 223  Q
    ||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||    
T  34309524 aggattgcaacgtcctaatgtaagaagtgatggatggttggagattgagatgggaga 34309468  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 123 - 220
Target Start/End: Complemental strand, 35147574 - 35147477
Alignment:
Q  123 tgtttggatccaaacttggaacataggcagcacaacaacgaagcaggattgcaacgtcctagtgttagatgtgatggatggttggagattgagatggg 220  Q
    ||||||||||||||  |||||  | ||||||| ||||  | || ||||||||||||||||||||| ||| | ||||| ||||||||||||||||||||    
T  35147574 tgtttggatccaaatgtggaaggtgggcagcataacagagcagtaggattgcaacgtcctagtgtgagaagcgatgggtggttggagattgagatggg 35147477  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 35190538 - 35190482
Alignment:
Q  167 aggattgcaacgtcctagtgttagatgtgatggatggttggagattgagatgggaga 223  Q
    ||||||||||||||||||||| ||| ||||||| ||||||||||||||||| |||||    
T  35190538 aggattgcaacgtcctagtgtgagaagtgatgggtggttggagattgagatcggaga 35190482  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 35270610 - 35270558
Alignment:
Q  168 ggattgcaacgtcctagtgttagatgtgatggatggttggagattgagatggg 220  Q
    |||||||||||||||||||| ||| ||||||| ||||||||||||||||||||    
T  35270610 ggattgcaacgtcctagtgtgagaagtgatgggtggttggagattgagatggg 35270558  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 146 - 220
Target Start/End: Complemental strand, 35263207 - 35263133
Alignment:
Q  146 taggcagcacaacaacgaagcaggattgcaacgtcctagtgttagatgtgatggatggttggagattgagatggg 220  Q
    ||||||||| ||||  | || ||||||||||||||||||||| ||| | ||||| ||||||||||||||||||||    
T  35263207 taggcagcataacagagcagtaggattgcaacgtcctagtgtgagaagcgatgggtggttggagattgagatggg 35263133  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 35276709 - 35276656
Alignment:
Q  167 aggattgcaacgtcctagtgttagatgtgatggatggttggagattgagatggg 220  Q
    ||||||||||||||||||||| ||| | ||||| ||||||||||||||||||||    
T  35276709 aggattgcaacgtcctagtgtgagaagagatgggtggttggagattgagatggg 35276656  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 35295849 - 35295905
Alignment:
Q  167 aggattgcaacgtcctagtgttagatgtgatggatggttggagattgagatgggaga 223  Q
    |||||||||||  |||||||| ||| ||||||| |||||||||||||||||||||||    
T  35295849 aggattgcaacagcctagtgtgagaagtgatgggtggttggagattgagatgggaga 35295905  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 223
Target Start/End: Complemental strand, 35476468 - 35476421
Alignment:
Q  176 acgtcctagtgttagatgtgatggatggttggagattgagatgggaga 223  Q
    |||||||||||| ||| ||||||| |||||||||||||||||||||||    
T  35476468 acgtcctagtgtgagacgtgatgggtggttggagattgagatgggaga 35476421  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 45525639 - 45525583
Alignment:
Q  167 aggattgcaacgtcctagtgttagatgtgatggatggttggagattgagatgggaga 223  Q
    ||||||||  |||||| |||| ||| ||||||| |||||||||||||||||||||||    
T  45525639 aggattgccgcgtcctggtgtgagaagtgatgggtggttggagattgagatgggaga 45525583  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 34309744 - 34309705
Alignment:
Q  1 ccccaaatactcagtatgcagcttatctcgtcttcaagat 40  Q
    ||||||||||||||||||| ||||||||||| ||||||||    
T  34309744 ccccaaatactcagtatgcggcttatctcgtgttcaagat 34309705  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 35200279 - 35200240
Alignment:
Q  1 ccccaaatactcagtatgcagcttatctcgtcttcaagat 40  Q
    |||||||||||||||||||||||||||| || ||||||||    
T  35200279 ccccaaatactcagtatgcagcttatcttgtgttcaagat 35200240  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 224
Target Start/End: Complemental strand, 35205074 - 35205027
Alignment:
Q  177 cgtcctagtgttagatgtgatggatggttggagattgagatgggagat 224  Q
    ||||||| ||| ||| ||||||| ||||||||||||||||||||||||    
T  35205074 cgtcctaatgtgagaagtgatgggtggttggagattgagatgggagat 35205027  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 223
Target Start/End: Complemental strand, 35212132 - 35212085
Alignment:
Q  176 acgtcctagtgttagatgtgatggatggttggagattgagatgggaga 223  Q
    |||||| ||||| ||| ||||||| |||||||||||||||||||||||    
T  35212132 acgtccgagtgtgagaagtgatgggtggttggagattgagatgggaga 35212085  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 223
Target Start/End: Complemental strand, 35225086 - 35225032
Alignment:
Q  169 gattgcaacgtcctagtgttagatgtgatggatggttggagattgagatgggaga 223  Q
    ||||||||||||||| ||| ||| | ||||| ||||| |||||||||||||||||    
T  35225086 gattgcaacgtcctaatgtgagaagcgatggctggttagagattgagatgggaga 35225032  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 45525833 - 45525799
Alignment:
Q  3 ccaaatactcagtatgcagcttatctcgtcttcaa 37  Q
    ||||||||||||||||||||||||||||| |||||    
T  45525833 ccaaatactcagtatgcagcttatctcgtgttcaa 45525799  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 35248635 - 35248598
Alignment:
Q  1 ccccaaatactcagtatgcagcttatctcgtcttcaag 38  Q
    |||||||||||||||||||||||||||| || ||||||    
T  35248635 ccccaaatactcagtatgcagcttatcttgtgttcaag 35248598  T

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