View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11033_low_35 (Length: 238)

Name: NF11033_low_35
Description: NF11033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11033_low_35
NF11033_low_35
[»] chr4 (6 HSPs)
chr4 (1-223)||(11806607-11806829)
chr4 (9-132)||(11855242-11855365)
chr4 (3-116)||(11837986-11838099)
chr4 (9-123)||(11430302-11430416)
chr4 (9-123)||(11565050-11565164)
chr4 (160-223)||(39522657-39522720)
[»] chr5 (1 HSPs)
chr5 (160-223)||(33002519-33002582)
[»] chr1 (1 HSPs)
chr1 (160-218)||(6076576-6076634)
[»] chr8 (2 HSPs)
chr8 (160-195)||(15124937-15124972)
chr8 (162-195)||(5291375-5291408)
[»] chr6 (1 HSPs)
chr6 (160-195)||(31527377-31527412)


Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 11806829 - 11806607
Alignment:
Q  1 cacaactggtgaaggatggaaaactcaagacaattattgactcgaagtttcctttgaacaaagctgaatatgcttgggctaagagcattgatggccatgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11806829 cacaactggtgaaggatggaaaactcaagacaattattgactcgaagtttcctttgaacaaagctgaatatgcttgggctaagagcattgatggccatgc 11806730  T
Q  101 tactggaaaaatcattgtggagcagtaggcatgacctatctgatgctactggaaaaatcattgtcagtcacagtgtatgattgcacaggacgaacacctt 200  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11806729 tactggaaaaatcattgtggagcagtaggcatgacctatttgatgctactggaaaaatcattgtcagtcacagtttatgattgcacaggacgaacacctt 11806630  T
Q  201 cagagattgtaaataatatgaag 223  Q
    |||||||||||||||||||||||    
T  11806629 cagagattgtaaataatatgaag 11806607  T

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Target: chr4; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 9 - 132
Target Start/End: Complemental strand, 11855365 - 11855242
Alignment:
Q  9 gtgaaggatggaaaactcaagacaattattgactcgaagtttcctttgaacaaagctgaatatgcttgggctaagagcattgatggccatgctactggaa 108  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  11855365 gtgaaggatggaaaactcaagacaattattgactccaagtttcctttgagcaaagctgaagatgcttgggctaagagcatcgatggccatgctactggaa 11855266  T
Q  109 aaatcattgtggagcagtaggcat 132  Q
    ||||||| |||||||| |||||||    
T  11855265 aaatcatagtggagcaataggcat 11855242  T

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Target: chr4; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 3 - 116
Target Start/End: Complemental strand, 11838099 - 11837986
Alignment:
Q  3 caactggtgaaggatggaaaactcaagacaattattgactcgaagtttcctttgaacaaagctgaatatgcttgggctaagagcattgatggccatgcta 102  Q
    ||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  11838099 caactagtgaaggatggaaaactcaagacaattatcgactctaagtttcctttgagcaaagctgaagatgcttgggctaagagcattgatggccatgcta 11838000  T
Q  103 ctggaaaaatcatt 116  Q
    ||||||||||||||    
T  11837999 ctggaaaaatcatt 11837986  T

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Target: chr4; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 11430416 - 11430302
Alignment:
Q  9 gtgaaggatggaaaactcaagacaattattgactcgaagtttcctttgaacaaagctgaatatgcttgggctaagagcattgatggccatgctactggaa 108  Q
    ||||| ||||||||||| |||||||| |||||||| ||||||||||||  ||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  11430416 gtgaaagatggaaaacttaagacaataattgactccaagtttcctttgggcaaagctgaatatgcttggtctaagatcattgatggccatgctactggaa 11430317  T
Q  109 aaatcattgtggagc 123  Q
    |||||||||||||||    
T  11430316 aaatcattgtggagc 11430302  T

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Target: chr4; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 11565050 - 11565164
Alignment:
Q  9 gtgaaggatggaaaactcaagacaattattgactcgaagtttcctttgaacaaagctgaatatgcttgggctaagagcattgatggccatgctactggaa 108  Q
    ||||| ||||||||||| |||||||| |||||||| ||||||||||||  ||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  11565050 gtgaaagatggaaaacttaagacaataattgactccaagtttcctttgggcaaagctgaatatgcttggtctaagatcattgatggccatgctactggaa 11565149  T
Q  109 aaatcattgtggagc 123  Q
    |||||||||||||||    
T  11565150 aaatcattgtggagc 11565164  T

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Target: chr4; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 160 - 223
Target Start/End: Original strand, 39522657 - 39522720
Alignment:
Q  160 attgtcagtcacagtgtatgattgcacaggacgaacaccttcagagattgtaaataatatgaag 223  Q
    ||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  39522657 attgtcagtcacaatttatgattgcacaggacgaacaccttcagatattgtaaataatacgaag 39522720  T

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Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 160 - 223
Target Start/End: Complemental strand, 33002582 - 33002519
Alignment:
Q  160 attgtcagtcacagtgtatgattgcacaggacgaacaccttcagagattgtaaataatatgaag 223  Q
    ||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||| ||||    
T  33002582 attgtcagtcacaatttatgattgcacaggacgaacgccttcagagattgtaaataatacgaag 33002519  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 6076634 - 6076576
Alignment:
Q  160 attgtcagtcacagtgtatgattgcacaggacgaacaccttcagagattgtaaataata 218  Q
    ||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||    
T  6076634 attgtcagtcacagtttatgattggacaggacgaacgccttcagagattgtaaataata 6076576  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 195
Target Start/End: Original strand, 15124937 - 15124972
Alignment:
Q  160 attgtcagtcacagtgtatgattgcacaggacgaac 195  Q
    ||||||||||||||| ||||||||||||||||||||    
T  15124937 attgtcagtcacagtttatgattgcacaggacgaac 15124972  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 195
Target Start/End: Complemental strand, 5291408 - 5291375
Alignment:
Q  162 tgtcagtcacagtgtatgattgcacaggacgaac 195  Q
    ||||||||||||| ||||||||||||||||||||    
T  5291408 tgtcagtcacagtttatgattgcacaggacgaac 5291375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 195
Target Start/End: Complemental strand, 31527412 - 31527377
Alignment:
Q  160 attgtcagtcacagtgtatgattgcacaggacgaac 195  Q
    ||||||||||||||| ||||||||||||||||||||    
T  31527412 attgtcagtcacagtttatgattgcacaggacgaac 31527377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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