View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11033_low_36 (Length: 237)

Name: NF11033_low_36
Description: NF11033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11033_low_36
NF11033_low_36
[»] chr2 (9 HSPs)
chr2 (4-223)||(41573259-41573497)
chr2 (12-78)||(44920988-44921053)
chr2 (12-77)||(31342720-31342784)
chr2 (12-77)||(11017489-11017553)
chr2 (12-77)||(15513699-15513763)
chr2 (16-77)||(30267035-30267095)
chr2 (12-76)||(22966558-22966621)
chr2 (12-72)||(24479189-24479248)
chr2 (12-77)||(7718217-7718281)
[»] chr8 (16 HSPs)
chr8 (115-212)||(27753073-27753170)
chr8 (12-77)||(6801834-6801898)
chr8 (12-77)||(28249079-28249143)
chr8 (12-77)||(45356116-45356180)
chr8 (12-77)||(6403625-6403689)
chr8 (12-77)||(17634475-17634539)
chr8 (12-77)||(25638839-25638903)
chr8 (46-104)||(9438765-9438823)
chr8 (12-77)||(25637676-25637740)
chr8 (13-77)||(31347381-31347444)
chr8 (34-77)||(5528775-5528818)
chr8 (59-110)||(26173781-26173832)
chr8 (16-77)||(5650953-5651013)
chr8 (12-77)||(29345463-29345527)
chr8 (12-77)||(29553661-29553725)
chr8 (68-113)||(44719153-44719198)
[»] chr5 (11 HSPs)
chr5 (34-110)||(42076046-42076122)
chr5 (12-78)||(7410855-7410920)
chr5 (12-77)||(5079068-5079132)
chr5 (12-77)||(17037575-17037639)
chr5 (16-77)||(31068971-31069030)
chr5 (12-77)||(9354393-9354457)
chr5 (34-77)||(9333586-9333629)
chr5 (34-77)||(10869469-10869512)
chr5 (44-77)||(18191884-18191917)
chr5 (12-77)||(30786299-30786363)
chr5 (12-77)||(37233064-37233128)
[»] chr3 (17 HSPs)
chr3 (12-78)||(9633446-9633511)
chr3 (12-77)||(13846024-13846088)
chr3 (12-77)||(2550198-2550262)
chr3 (12-77)||(2943218-2943282)
chr3 (12-77)||(7407758-7407822)
chr3 (12-77)||(16457335-16457399)
chr3 (34-77)||(26707891-26707934)
chr3 (11-77)||(1613216-1613281)
chr3 (32-77)||(1627970-1628015)
chr3 (32-77)||(1654608-1654653)
chr3 (64-112)||(5498455-5498503)
chr3 (34-82)||(27713464-27713511)
chr3 (38-76)||(27259474-27259512)
chr3 (12-77)||(5498510-5498574)
chr3 (62-99)||(27713509-27713546)
chr3 (12-69)||(36035329-36035385)
chr3 (115-199)||(21942867-21942951)
[»] chr6 (9 HSPs)
chr6 (12-77)||(16734837-16734901)
chr6 (12-77)||(11936771-11936835)
chr6 (12-77)||(11948751-11948815)
chr6 (12-77)||(15361747-15361811)
chr6 (34-77)||(29667940-29667983)
chr6 (12-77)||(12591865-12591929)
chr6 (12-77)||(23264500-23264564)
chr6 (34-77)||(15690470-15690513)
chr6 (49-77)||(6684126-6684154)
[»] chr1 (7 HSPs)
chr1 (12-77)||(12189984-12190048)
chr1 (12-77)||(13208644-13208708)
chr1 (12-77)||(16222810-16222874)
chr1 (34-77)||(3399654-3399697)
chr1 (34-77)||(897487-897530)
chr1 (34-77)||(5911689-5911732)
chr1 (15-77)||(1843984-1844045)
[»] scaffold0576 (1 HSPs)
scaffold0576 (12-77)||(6731-6795)
[»] chr7 (11 HSPs)
chr7 (34-79)||(16170301-16170346)
chr7 (12-78)||(10022155-10022220)
chr7 (12-78)||(20277364-20277429)
chr7 (12-77)||(4685407-4685471)
chr7 (12-77)||(26224982-26225046)
chr7 (12-77)||(26608543-26608607)
chr7 (34-77)||(26621116-26621159)
chr7 (12-77)||(26619108-26619171)
chr7 (12-77)||(26205419-26205483)
chr7 (12-77)||(30089767-30089831)
chr7 (1-57)||(26701083-26701138)
[»] chr4 (8 HSPs)
chr4 (12-77)||(43600299-43600363)
chr4 (16-77)||(53300383-53300443)
chr4 (34-77)||(48464072-48464115)
chr4 (34-76)||(21539296-21539338)
chr4 (16-77)||(47066042-47066102)
chr4 (34-77)||(24559020-24559063)
chr4 (12-77)||(1152076-1152140)
chr4 (12-77)||(4904144-4904208)
[»] scaffold0272 (1 HSPs)
scaffold0272 (120-184)||(1761-1825)


Alignment Details
Target: chr2 (Bit Score: 159; Significance: 8e-85; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 4 - 223
Target Start/End: Complemental strand, 41573497 - 41573259
Alignment:
Q  4 tgaagtaatttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt--------------------tgaatg 83  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||                    ||||||    
T  41573497 tgaagtaatttagtaacacggggtttacct-aacaattgtttaactgttactaaatttaattagtaacatttttcttgatttagttacattttttgaatg 41573399  T
Q  84 ttactaaatctcaattttgttgtagtgatatatgtgtcaaattggtttaattccgaacttactagaaaggttaggaatggtgtgaacactagtttttggg 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41573398 ttactaaatctcaattttgttgtagtgatatatgtgtcaaattggtttaattccgaacttactagaaaggttaggaatggtgtgaacactagtttttggg 41573299  T
Q  184 acgtagcttggaggggagatatttcgttccggggagaaat 223  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  41573298 acgtagcttggagggtagatatttcgttccggggagaaat 41573259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 44921053 - 44920988
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacatttttt 78  Q
    |||||||||||| | ||||||| ||||||||||||  ||||||||||||||||||||||||||||||    
T  44921053 tttagtaacacgagctttacct-aacaattgtttaggtgttactaaatttaattagtaacatttttt 44920988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 31342720 - 31342784
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    |||||||||||||| |||| || |||||||||| || |||| ||||||||||||||||||||||||    
T  31342720 tttagtaacacgggctttatct-aacaattgttcaagtgttgctaaatttaattagtaacattttt 31342784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 11017553 - 11017489
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    |||||||||||||  ||||||| |||||||| | || |||||||||||||||||||||||| ||||    
T  11017553 tttagtaacacggactttacct-aacaattggtcaaatgttactaaatttaattagtaacaatttt 11017489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 15513763 - 15513699
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    |||||||||||| | ||||||| |||||||||| || |||||| |||||||| |||||||||||||    
T  15513763 tttagtaacacgagctttacct-aacaattgttcaagtgttacaaaatttaactagtaacattttt 15513699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 30267095 - 30267035
Alignment:
Q  16 gtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    |||||||||| ||||||| |||||||||| |  |||||||||||||||||| ||||||||||    
T  30267095 gtaacacgggctttacct-aacaattgttcaggtgttactaaatttaattactaacattttt 30267035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 22966621 - 22966558
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacatttt 76  Q
    |||||||||| ||| ||||||| ||||||||||||| ||| ||||||||| |||||||| |||||    
T  22966621 tttagtaacaggggctttacct-aacaattgtttaaatgtaactaaatttcattagtaatatttt 22966558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 24479248 - 24479189
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaaca 72  Q
    |||||||||||| | ||||||| || ||||||| || ||||||||||||||||||||||||    
T  24479248 tttagtaacacgagctttacct-aagaattgttcaaatgttactaaatttaattagtaaca 24479189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 7718281 - 7718217
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    |||||||||||||  |||| || |||||||||| |  |||||||||||||||||||||| ||||||    
T  7718281 tttagtaacacggactttatct-aacaattgttcatgtgttactaaatttaattagtaatattttt 7718217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 7e-39; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 115 - 212
Target Start/End: Original strand, 27753073 - 27753170
Alignment:
Q  115 atgtgtcaaattggtttaattccgaacttactagaaaggttaggaatggtgtgaacactagtttttgggacgtagcttggaggggagatatttcgttc 212  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||    
T  27753073 atgtgtcaaattggtttaattccgaacttactagagaggttaggaatggtgtgaacacgagtttttgggatgtagcttggaggggagagatttcgttc 27753170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 6801834 - 6801898
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    |||||||||| ||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  6801834 tttagtaacaggggctttacct-aacaattgttcaactgttactaaatttaattagtaacattttt 6801898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 28249079 - 28249143
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    |||||||||||||| ||||||| |||||||||| || |||| ||||||||||||||||||||||||    
T  28249079 tttagtaacacgggctttacct-aacaattgttcaagtgttgctaaatttaattagtaacattttt 28249143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 45356116 - 45356180
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    |||||||||||||| ||||||| |||||||||| || |||| ||||||||||||||||||||||||    
T  45356116 tttagtaacacgggctttacct-aacaattgttcaagtgttgctaaatttaattagtaacattttt 45356180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 6403689 - 6403625
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    |||| ||||||||| ||||||| |||||||| | || |||||||||||||||||||||||||||||    
T  6403689 tttaataacacgggctttacct-aacaattgctcaaatgttactaaatttaattagtaacattttt 6403625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 17634475 - 17634539
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    |||||||||||||| ||||||| | |||||||| || ||||| |||||||||||||||||||||||    
T  17634475 tttagtaacacgggctttacct-atcaattgttcaagtgttattaaatttaattagtaacattttt 17634539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 25638903 - 25638839
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    |||||||||| ||| ||||||| |||||||||| || |||| ||||||||||||||||||||||||    
T  25638903 tttagtaacatgggttttacct-aacaattgttcaagtgttgctaaatttaattagtaacattttt 25638839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 9438765 - 9438823
Alignment:
Q  46 aactgttactaaatttaattagtaacattttttgaatgttactaaatctcaattttgtt 104  Q
    |||||||||||| ||||| |||||||||||||  | ||||||||||||||| |||||||    
T  9438765 aactgttactaagtttaaatagtaacatttttcaagtgttactaaatctcatttttgtt 9438823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 25637740 - 25637676
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    |||||||||||||| ||||||| ||||||||||  | |||| ||||||||||||||||||| ||||    
T  25637740 tttagtaacacgggctttacct-aacaattgttcgagtgttgctaaatttaattagtaacagtttt 25637676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 31347444 - 31347381
Alignment:
Q  13 ttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    |||||||||| ||||||| || |||||||| | || ||||||||||||||||||||| |||||||    
T  31347444 ttagtaacacaggatttatct-aacaattgatcaaatgttactaaatttaattagtagcattttt 31347381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 5528818 - 5528775
Alignment:
Q  34 taacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    |||||||||||| | |||| ||||||||||||||||||||||||    
T  5528818 taacaattgtttgagtgttgctaaatttaattagtaacattttt 5528775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 110
Target Start/End: Complemental strand, 26173832 - 26173781
Alignment:
Q  59 tttaattagtaacattttttgaatgttactaaatctcaattttgttgtagtg 110  Q
    |||| ||||||| ||||||| | ||||||||||||||| |||||||||||||    
T  26173832 tttatttagtaatattttttaagtgttactaaatctcatttttgttgtagtg 26173781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 5650953 - 5651013
Alignment:
Q  16 gtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    |||||| ||| ||||||| |||||||||| || |||| ||||||| ||||||||||||||||    
T  5650953 gtaacaagggttttacct-aacaattgttcaaatgttgctaaattgaattagtaacattttt 5651013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 29345527 - 29345463
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    |||||||| | ||| ||||||| |||||||||| ||  ||||||||||||||||||||| ||||||    
T  29345527 tttagtaagaggggctttacct-aacaattgttcaaaggttactaaatttaattagtaatattttt 29345463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 29553725 - 29553661
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    |||||||||||| | |||| || |||||||| | || |||| ||||||||||||||||||||||||    
T  29553725 tttagtaacacgcgctttaact-aacaattgctcaaatgttgctaaatttaattagtaacattttt 29553661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 44719153 - 44719198
Alignment:
Q  68 taacattttttgaatgttactaaatctcaattttgttgtagtgata 113  Q
    ||||||||||  |||||||||||||||||| | |||||||||||||    
T  44719153 taacatttttcaaatgttactaaatctcaagtatgttgtagtgata 44719198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 34 - 110
Target Start/End: Complemental strand, 42076122 - 42076046
Alignment:
Q  34 taacaattgtttaactgttactaaatttaattagtaacattttttgaatgttactaaatctcaattttgttgtagtg 110  Q
    ||||||||||| || |||||||||||||||||||||||| ||||  | |||||||| ||||||||| ||||||||||    
T  42076122 taacaattgttcaaatgttactaaatttaattagtaacaattttcaattgttactagatctcaattatgttgtagtg 42076046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 7410920 - 7410855
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacatttttt 78  Q
    |||||||||||||| ||||||| |||||||||| || |||| |||||||||||||||||||||||||    
T  7410920 tttagtaacacgggctttacct-aacaattgttcaagtgttgctaaatttaattagtaacatttttt 7410855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 5079068 - 5079132
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    |||||||||||||| ||||||| |||||||||| || |||| ||||||||||||||||||||||||    
T  5079068 tttagtaacacgggctttacct-aacaattgttcaagtgttgctaaatttaattagtaacattttt 5079132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 17037639 - 17037575
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    ||||||||||| |  ||||||| |||||||||| || |||||||||||||||||||||||||||||    
T  17037639 tttagtaacactgactttacct-aacaattgttcaaatgttactaaatttaattagtaacattttt 17037575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 31068971 - 31069030
Alignment:
Q  16 gtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    |||||||||| ||||||| |||||||||| || |||||||||||||||||||||||||||||    
T  31068971 gtaacacgggctttacct-aacaattgttcaa-tgttactaaatttaattagtaacattttt 31069030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 9354393 - 9354457
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    |||||||||| ||| ||||||| |||||||| | || ||||| |||||||||||||||||||||||    
T  9354393 tttagtaacatgggctttacct-aacaattgctcaaatgttattaaatttaattagtaacattttt 9354457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 77
Target Start/End: Original strand, 9333586 - 9333629
Alignment:
Q  34 taacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    ||||||||| | || |||||||||||||||||||||||||||||    
T  9333586 taacaattgctcaaatgttactaaatttaattagtaacattttt 9333629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 10869512 - 10869469
Alignment:
Q  34 taacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    ||||||||||| || |||||||||||||||||||||||| ||||    
T  10869512 taacaattgttcaaatgttactaaatttaattagtaacaatttt 10869469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 77
Target Start/End: Original strand, 18191884 - 18191917
Alignment:
Q  44 ttaactgttactaaatttaattagtaacattttt 77  Q
    |||| |||||||||||||||||||||||||||||    
T  18191884 ttaaatgttactaaatttaattagtaacattttt 18191917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 30786363 - 30786299
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    |||||||||| || |||||||| ||||||| || || |||||||||||| ||| ||||||||||||    
T  30786363 tttagtaacaaggcatttacct-aacaattattcaaatgttactaaattgaatcagtaacattttt 30786299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 37233128 - 37233064
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    |||||||||||||  | ||||| |||||||| | || ||||||||||||||||||||||| |||||    
T  37233128 tttagtaacacggactatacct-aacaattgctcaaatgttactaaatttaattagtaactttttt 37233064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 9633446 - 9633511
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacatttttt 78  Q
    |||||||||| ||| ||||||| ||||||||||||| ||| ||||||||||||||||||||||||||    
T  9633446 tttagtaacaggggctttacct-aacaattgtttaaatgtaactaaatttaattagtaacatttttt 9633511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 13846088 - 13846024
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    |||||||||||||| ||||||| |||||||||| || |||| ||||||||||||||||||||||||    
T  13846088 tttagtaacacgggctttacct-aacaattgttcaagtgttgctaaatttaattagtaacattttt 13846024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 2550262 - 2550198
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    ||||||||||| || ||||||| |||||||||| || |||| ||||||||||||||||||||||||    
T  2550262 tttagtaacacaggctttacct-aacaattgttcaagtgttgctaaatttaattagtaacattttt 2550198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 2943218 - 2943282
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    |||||||||||||| || |||| ||||||||||  | |||||||||||||||||||||||||||||    
T  2943218 tttagtaacacgggcttaacct-aacaattgttcgaatgttactaaatttaattagtaacattttt 2943282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 7407758 - 7407822
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    |||||||||||||| ||||||| |||||||||| || |||| ||||||||||||||||| ||||||    
T  7407758 tttagtaacacgggctttacct-aacaattgttcaagtgttgctaaatttaattagtaatattttt 7407822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 16457335 - 16457399
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    |||||||||||| | ||||||| |||||||| | || |||||||||||||||||||||||||||||    
T  16457335 tttagtaacacgagctttacct-aacaattgctcaaatgttactaaatttaattagtaacattttt 16457399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 26707934 - 26707891
Alignment:
Q  34 taacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    ||||||||||| || |||||||||||||||||||||||||||||    
T  26707934 taacaattgttcaaatgttactaaatttaattagtaacattttt 26707891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 1613216 - 1613281
Alignment:
Q  11 atttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    ||||||||||| ||| ||||||| || ||||| | ||||||||||||||||| ||||||||||||||    
T  1613216 atttagtaacaggggctttacctaaa-aattggtcaactgttactaaatttatttagtaacattttt 1613281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 1627970 - 1628015
Alignment:
Q  32 cttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    ||||||||||||| || |||||||||||||||||||||| ||||||    
T  1627970 cttaacaattgttcaagtgttactaaatttaattagtaatattttt 1628015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 1654653 - 1654608
Alignment:
Q  32 cttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    ||||||||||||| || |||| ||||||||||||||||||||||||    
T  1654653 cttaacaattgttcaagtgttgctaaatttaattagtaacattttt 1654608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 5498503 - 5498455
Alignment:
Q  64 ttagtaacattttttgaatgttactaaatctcaattttgttgtagtgat 112  Q
    ||||| ||||||||| | |||||||||||||||||| ||||||||||||    
T  5498503 ttagttacattttttaattgttactaaatctcaattatgttgtagtgat 5498455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 27713464 - 27713511
Alignment:
Q  34 taacaattgtttaactgttactaaatttaattagtaacattttttgaat 82  Q
    |||||||| ||||| ||||||||||||||||||||||| ||||||||||    
T  27713464 taacaattatttaaatgttactaaatttaattagtaac-ttttttgaat 27713511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 27259474 - 27259512
Alignment:
Q  38 aattgtttaactgttactaaatttaattagtaacatttt 76  Q
    ||||||| || ||||||||||||||||||||||||||||    
T  27259474 aattgttcaaatgttactaaatttaattagtaacatttt 27259512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 5498574 - 5498510
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    ||||||||||  || ||||||| |||||||||| |   ||||||||||||||||||||||||||||    
T  5498574 tttagtaacataggttttacct-aacaattgttcagaagttactaaatttaattagtaacattttt 5498510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 99
Target Start/End: Original strand, 27713509 - 27713546
Alignment:
Q  62 aattagtaacattttttgaatgttactaaatctcaatt 99  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  27713509 aattagttacattttttaaatgttactaaatctcaatt 27713546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 36035385 - 36035329
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagta 69  Q
    |||||||||||| | ||||||| |||||||||  || |||||||||||||||||||||    
T  36035385 tttagtaacacgagctttacct-aacaattgtacaattgttactaaatttaattagta 36035329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 199
Target Start/End: Complemental strand, 21942951 - 21942867
Alignment:
Q  115 atgtgtcaaattggtttaattccgaacttactagaaaggttaggaatggtgtgaacactagtttttgggacgtagcttggagggg 199  Q
    |||| ||||||||||| ||||||||| || ||||||| ||  | ||||||| || ||  ||||||||||| || |||||||||||    
T  21942951 atgtttcaaattggttcaattccgaaatttctagaaaagtgggaaatggtgagagcatgagtttttgggaagtggcttggagggg 21942867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 16734901 - 16734837
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    |||||||||||||| ||||||| |||||||||| || |||| ||||||||||||||||||||||||    
T  16734901 tttagtaacacgggctttacct-aacaattgttcaaatgttgctaaatttaattagtaacattttt 16734837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 11936771 - 11936835
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    |||||||||||||| |||| || |||||||||| || |||| ||||||||||||||||||||||||    
T  11936771 tttagtaacacgggctttatct-aacaattgttcaagtgttgctaaatttaattagtaacattttt 11936835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 11948751 - 11948815
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    |||||||||||||| |||| || |||||||||| || |||| ||||||||||||||||||||||||    
T  11948751 tttagtaacacgggctttatct-aacaattgttcaagtgttgctaaatttaattagtaacattttt 11948815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 15361811 - 15361747
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    ||||||||||| || ||||||| |||||||||| || |||| ||||||||||||||||||||||||    
T  15361811 tttagtaacaccggctttacct-aacaattgttcaagtgttgctaaatttaattagtaacattttt 15361747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 77
Target Start/End: Original strand, 29667940 - 29667983
Alignment:
Q  34 taacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    ||||||||||| || |||||||||||||||||||||||||||||    
T  29667940 taacaattgttcaaatgttactaaatttaattagtaacattttt 29667983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 12591929 - 12591865
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    |||||||||||||| ||||||| ||||||||||  |  ||||||||||||||||| ||||||||||    
T  12591929 tttagtaacacgggctttacct-aacaattgttcgagcgttactaaatttaattactaacattttt 12591865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 23264500 - 23264564
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    |||||||||||||  ||||||| ||||||||||  | |||||||||||||||||||||||| ||||    
T  23264500 tttagtaacacggattttacct-aacaattgttcgaatgttactaaatttaattagtaacaatttt 23264564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 15690513 - 15690470
Alignment:
Q  34 taacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    |||||||||||| | ||| |||||||||||||||||||||||||    
T  15690513 taacaattgtttgagtgtcactaaatttaattagtaacattttt 15690470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 77
Target Start/End: Complemental strand, 6684154 - 6684126
Alignment:
Q  49 tgttactaaatttaattagtaacattttt 77  Q
    |||||||||||||||||||||||||||||    
T  6684154 tgttactaaatttaattagtaacattttt 6684126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 12190048 - 12189984
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    |||||||||||||| ||||||| |||||||||| || |||||||||||||||||||||| ||||||    
T  12190048 tttagtaacacgggctttacct-aacaattgttcaaatgttactaaatttaattagtaatattttt 12189984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 13208708 - 13208644
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    |||||||||||||| ||||||| |||||| ||| || || ||||||||||||||||||||||||||    
T  13208708 tttagtaacacgggttttacct-aacaatggttcaagtggtactaaatttaattagtaacattttt 13208644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 16222874 - 16222810
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    |||||||||||||| ||||||| ||||||| || || ||||||||||||| |||||||||||||||    
T  16222874 tttagtaacacgggctttacct-aacaattattcaagtgttactaaattttattagtaacattttt 16222810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 3399697 - 3399654
Alignment:
Q  34 taacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    ||||||||||| || |||||||||||||||||||||||||||||    
T  3399697 taacaattgttcaaatgttactaaatttaattagtaacattttt 3399654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 897530 - 897487
Alignment:
Q  34 taacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    ||||||||||| || ||||||||||||||||||| |||||||||    
T  897530 taacaattgttcaattgttactaaatttaattaggaacattttt 897487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 77
Target Start/End: Original strand, 5911689 - 5911732
Alignment:
Q  34 taacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    ||||||||||| || |||||||||||||||| ||||||||||||    
T  5911689 taacaattgttcaagtgttactaaatttaatcagtaacattttt 5911732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 1844045 - 1843984
Alignment:
Q  15 agtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    ||||||| ||| ||||||| |||||||||| || |||||||||||| ||| ||||||||||||    
T  1844045 agtaacatggggtttacct-aacaattgttcaaatgttactaaattcaatcagtaacattttt 1843984  T

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Target: scaffold0576 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 6795 - 6731
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    ||||||||||| || ||||||| |||||||||| || |||| ||||||||||||||||||||||||    
T  6795 tttagtaacaccggctttacct-aacaattgttcaagtgttgctaaatttaattagtaacattttt 6731  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 16170346 - 16170301
Alignment:
Q  34 taacaattgtttaactgttactaaatttaattagtaacattttttg 79  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||    
T  16170346 taacaattgtttaagtgttactaaatttaattagtaacactttttg 16170301  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 10022220 - 10022155
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacatttttt 78  Q
    |||||||||||| | ||||||| |||||||||| |  |||||||||| |||||||||||||||||||    
T  10022220 tttagtaacacgagctttacct-aacaattgttcatgtgttactaaacttaattagtaacatttttt 10022155  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 20277364 - 20277429
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacatttttt 78  Q
    |||||||||| | | ||||||| ||||||||||||| |||||||||||||||||| ||| |||||||    
T  20277364 tttagtaacaggtgctttacct-aacaattgtttaaatgttactaaatttaattaataatatttttt 20277429  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 4685407 - 4685471
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    |||||||| ||||| ||||||| |||||||||| || |||| ||||||||||||| ||||||||||    
T  4685407 tttagtaatacgggctttacct-aacaattgttcaagtgttgctaaatttaattactaacattttt 4685471  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 26224982 - 26225046
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    ||||||||||| || ||||||| || ||||||| || ||||||||||||||||||||| |||||||    
T  26224982 tttagtaacaccggctttacct-aataattgttcaagtgttactaaatttaattagtatcattttt 26225046  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 26608543 - 26608607
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    |||||||||| ||| |||| || |||||||||| || |||||||||||||||| ||||||||||||    
T  26608543 tttagtaacatgggctttatct-aacaattgttcaaatgttactaaatttaatcagtaacattttt 26608607  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 77
Target Start/End: Original strand, 26621116 - 26621159
Alignment:
Q  34 taacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    |||||||||||||| |||| ||||||||||| ||||||||||||    
T  26621116 taacaattgtttaaatgttgctaaatttaatcagtaacattttt 26621159  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 26619108 - 26619171
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    ||||||||||  ||||||||||  ||||||||| || ||||| |||||||||| ||||||||||||    
T  26619108 tttagtaacataggatttacct--acaattgttcaaatgttaataaatttaatcagtaacattttt 26619171  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 26205419 - 26205483
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    |||||||||||  | ||||||| | ||||| || || |||||||||||||||||||||||||||||    
T  26205419 tttagtaacaccagctttacct-accaatttttcaagtgttactaaatttaattagtaacattttt 26205483  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 30089831 - 30089767
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    |||||||||| ||| ||| ||| |||||||||| || ||||||||||| |||| ||||||||||||    
T  30089831 tttagtaacatgggcttttcct-aacaattgttcaaatgttactaaatataatcagtaacattttt 30089767  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 26701138 - 26701083
Alignment:
Q  1 tactgaagtaatttagtaacacgggatttaccttaacaattgtttaactgttactaa 57  Q
    ||||||||| ||||||||||||||| |||||| |||||||||   ||||||||||||    
T  26701138 tactgaagttatttagtaacacgggctttacc-taacaattggccaactgttactaa 26701083  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 43600363 - 43600299
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    |||||||||||||| ||||||| |||||||||| || | || ||||||||||||||||||||||||    
T  43600363 tttagtaacacgggctttacct-aacaattgttcaagttttgctaaatttaattagtaacattttt 43600299  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 53300443 - 53300383
Alignment:
Q  16 gtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    |||||||||| ||||||| ||||||||||||  |||||||||||||||||| ||||||||||    
T  53300443 gtaacacgggctttacct-aacaattgtttaggtgttactaaatttaattactaacattttt 53300383  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 48464115 - 48464072
Alignment:
Q  34 taacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    ||||||||||| || |||||||||||||||||||||||||||||    
T  48464115 taacaattgttcaaatgttactaaatttaattagtaacattttt 48464072  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 76
Target Start/End: Original strand, 21539296 - 21539338
Alignment:
Q  34 taacaattgtttaactgttactaaatttaattagtaacatttt 76  Q
    |||||||||||||| |||||||||||||||| |||||||||||    
T  21539296 taacaattgtttaaatgttactaaatttaatcagtaacatttt 21539338  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 47066042 - 47066102
Alignment:
Q  16 gtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    |||||||||| ||||||| |||||||||| |  |||||||||||||||||| ||||||||||    
T  47066042 gtaacacgggctttacct-aacaattgttcaggtgttactaaatttaattactaacattttt 47066102  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 77
Target Start/End: Original strand, 24559020 - 24559063
Alignment:
Q  34 taacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    ||||||| ||| || |||||||||||||||||||||||||||||    
T  24559020 taacaatcgttcaaatgttactaaatttaattagtaacattttt 24559063  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 1152140 - 1152076
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    |||||||||||||  |||| || ||||||||||| | |||| | ||||||||||||||||||||||    
T  1152140 tttagtaacacggactttatct-aacaattgtttgagtgttgcaaaatttaattagtaacattttt 1152076  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 4904144 - 4904208
Alignment:
Q  12 tttagtaacacgggatttaccttaacaattgtttaactgttactaaatttaattagtaacattttt 77  Q
    |||||||||| | | ||||||| |||||||||  || |||||||||||||||| ||||||||||||    
T  4904144 tttagtaacaagtgctttacct-aacaattgtacaaatgttactaaatttaatcagtaacattttt 4904208  T

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Target: scaffold0272 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 184
Target Start/End: Original strand, 1761 - 1825
Alignment:
Q  120 tcaaattggtttaattccgaacttactagaaaggttaggaatggtgtgaacactagtttttggga 184  Q
    ||||||||||| | |||||||||| ||||||| ||  ||||||||| |||||| |||| ||||||    
T  1761 tcaaattggttcacttccgaactttctagaaaagtggggaatggtgcgaacacaagttcttggga 1825  T

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