View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11033_low_40 (Length: 207)

Name: NF11033_low_40
Description: NF11033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11033_low_40
NF11033_low_40
[»] chr3 (1 HSPs)
chr3 (1-193)||(8522368-8522560)
[»] chr5 (8 HSPs)
chr5 (8-192)||(42117001-42117185)
chr5 (3-178)||(42122747-42122922)
chr5 (3-192)||(42128142-42128331)
chr5 (25-193)||(34233426-34233594)
chr5 (25-193)||(34241199-34241367)
chr5 (2-173)||(41714176-41714347)
chr5 (36-193)||(41618291-41618448)
chr5 (36-193)||(41572652-41572809)
[»] chr4 (1 HSPs)
chr4 (12-173)||(11117413-11117574)
[»] chr2 (4 HSPs)
chr2 (12-178)||(11995052-11995218)
chr2 (12-171)||(12247712-12247871)
chr2 (23-139)||(32682381-32682497)
chr2 (55-173)||(9423388-9423506)
[»] chr6 (1 HSPs)
chr6 (1-188)||(25523675-25523862)


Alignment Details
Target: chr3 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 8522368 - 8522560
Alignment:
Q  1 ttcctcgtcattcttgtccttcttttcactctcctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8522368 ttcctcgtcattcttgtccttcttttcactctcctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatc 8522467  T
Q  101 caatgcctattccgatcacaaatccacatccgtatccaattgccactggtttccatccaaatccaaatttctcctcaccgcaaaagttgttgg 193  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||| ||||||||||||||    
T  8522468 caatgcctattccaatcacaaatccacatccgtatccaattgccactggtttccatccaaattcaaacttctcttcactgcaaaagttgttgg 8522560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 141; Significance: 4e-74; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 8 - 192
Target Start/End: Original strand, 42117001 - 42117185
Alignment:
Q  8 tcattcttgtccttcttttcactctcctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcc 107  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||    
T  42117001 tcattcttgttcttcttttcactcttctcttaggctgaccaccaaatatcatcacaatccatctaggctttccaattaaaaacataaaatatccaatgcc 42117100  T
Q  108 tattccgatcacaaatccacatccgtatccaattgccactggtttccatccaaatccaaatttctcctcaccgcaaaagttgttg 192  Q
    |||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||| ||||||| |||||    
T  42117101 tattccaatcacaaatccacatccatatccaattgccactgctttccatccaaatccaaatttctcttcactgcaaaagctgttg 42117185  T

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Target: chr5; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 3 - 178
Target Start/End: Original strand, 42122747 - 42122922
Alignment:
Q  3 cctcgtcattcttgtccttcttttcactctcctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatcca 102  Q
    |||| ||| |||||| || ||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42122747 cctcctcactcttgttctccttgtcactcttctcttaggcggaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatcca 42122846  T
Q  103 atgcctattccgatcacaaatccacatccgtatccaattgccactggtttccatccaaatccaaatttctcctcac 178  Q
    |||| |||||| ||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||| ||||    
T  42122847 atgcatattccaatcacaaatccacatccatatccaatcgccactggtttccatccaaatctaaatttctcttcac 42122922  T

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Target: chr5; HSP #3
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 3 - 192
Target Start/End: Original strand, 42128142 - 42128331
Alignment:
Q  3 cctcgtcattcttgtccttcttttcactctcctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatcca 102  Q
    |||| ||| |||||| || ||| ||||||| |||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||    
T  42128142 cctcctcactcttgttctccttgtcactcttctcttaggctgaccaccaaatatcataacaagccatctagacttttcaattaaaaacatataatatcca 42128241  T
Q  103 atgcctattccgatcacaaatccacatccgtatccaattgccactggtttccatccaaatccaaatttctcctcaccgcaaaagttgttg 192  Q
    ||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||| ||||  ||| ||||||||    
T  42128242 atgcctattccaatcacaaatccacatccatatccaatcgccactggtttccatccaaatctaaatttctcttcactccaagagttgttg 42128331  T

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Target: chr5; HSP #4
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 25 - 193
Target Start/End: Complemental strand, 34233594 - 34233426
Alignment:
Q  25 ttcactctcctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccgatcacaaatc 124  Q
    |||||||| |||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||    
T  34233594 ttcactcttctcttaggatgaccaccaaatatcatcacaaaccatctaggctttccaattaaaaacatataatatccaaggcctattccaaacacaaatc 34233495  T
Q  125 cacatccgtatccaattgccactggtttccatccaaatccaaatttctcctcaccgcaaaagttgttgg 193  Q
    ||||||| || |||||||||||||||||||||||||| ||||||||||| ||||  |||||||||||||    
T  34233494 cacatccataaccaattgccactggtttccatccaaagccaaatttctcttcactccaaaagttgttgg 34233426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 25 - 193
Target Start/End: Complemental strand, 34241367 - 34241199
Alignment:
Q  25 ttcactctcctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccgatcacaaatc 124  Q
    |||||||| |||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||    
T  34241367 ttcactcttctcttaggatgaccaccaaatatcatcacaaaccatctaggctttccaattaaaaacatataatatccaaggcctattccaaacacaaatc 34241268  T
Q  125 cacatccgtatccaattgccactggtttccatccaaatccaaatttctcctcaccgcaaaagttgttgg 193  Q
    ||||||| || |||||||||||||||||||||||||| ||||||||||| ||||  |||||||||||||    
T  34241267 cacatccataaccaattgccactggtttccatccaaagccaaatttctcttcactccaaaagttgttgg 34241199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 2 - 173
Target Start/End: Complemental strand, 41714347 - 41714176
Alignment:
Q  2 tcctcgtcattcttgtccttcttttcactctcctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatcc 101  Q
    ||||| |||||||||| || | | ||||| | ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| ||    
T  41714347 tcctcctcattcttgttctccctgtcactattctcttaggctgaccaccaaatatcatgacaagccatctaggctttccgatcaaaaacatgtaataccc 41714248  T
Q  102 aatgcctattccgatcacaaatccacatccgtatccaattgccactggtttccatccaaatccaaatttctc 173  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  41714247 aatgcctattccaatcacaaatccacatccatatccaattgccactgctttccatccaaatccaaatttctc 41714176  T

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Target: chr5; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 36 - 193
Target Start/End: Complemental strand, 41618448 - 41618291
Alignment:
Q  36 cttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccgatcacaaatccacatccgtat 135  Q
    |||||| ||||| ||||  ||||| |||||||||||||||||||||||||| |||| | || |||||| ||||||||| || || | ||||||||| |||    
T  41618448 cttaggttgacctccaaccatcatcacaagccatctaggctttccaattaacaacacaaaacatccaaggcctattccaataaccattccacatccatat 41618349  T
Q  136 ccaattgccactggtttccatccaaatccaaatttctcctcaccgcaaaagttgttgg 193  Q
    ||||| |||||||||||||||||||||||||||||||| ||||  |||| ||||||||    
T  41618348 ccaatagccactggtttccatccaaatccaaatttctcttcactccaaaggttgttgg 41618291  T

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Target: chr5; HSP #8
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 36 - 193
Target Start/End: Complemental strand, 41572809 - 41572652
Alignment:
Q  36 cttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccgatcacaaatccacatccgtat 135  Q
    |||||| ||||| ||||  ||||| ||||||||||||||||||||  |||| |||| | || |||||| ||||||||| || || | ||||||||| |||    
T  41572809 cttaggttgacctccaaccatcatcacaagccatctaggctttccggttaacaacacaaaacatccaaggcctattccaataaccattccacatccatat 41572710  T
Q  136 ccaattgccactggtttccatccaaatccaaatttctcctcaccgcaaaagttgttgg 193  Q
    ||||| |||||||||||||||||||||||||||||||| ||||  |||| ||||||||    
T  41572709 ccaatagccactggtttccatccaaatccaaatttctcttcactccaaaggttgttgg 41572652  T

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Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 12 - 173
Target Start/End: Original strand, 11117413 - 11117574
Alignment:
Q  12 tcttgtccttcttttcactctcctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctatt 111  Q
    |||||| || ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11117413 tcttgttctccttgtcactcttctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcttatt 11117512  T
Q  112 ccgatcacaaatccacatccgtatccaattgccactggtttccatccaaatccaaatttctc 173  Q
    || ||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||    
T  11117513 ccaatcacaaatccacatgcatatccaattgccactgctttccatccaaatccaaatttctc 11117574  T

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Target: chr2 (Bit Score: 123; Significance: 2e-63; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 12 - 178
Target Start/End: Complemental strand, 11995218 - 11995052
Alignment:
Q  12 tcttgtccttcttttcactctcctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctatt 111  Q
    |||||| || ||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| | |||||||    
T  11995218 tcttgttctccttttcactcttcttttaggctgaccaccaaatatcatcacaagccatctaggctttccaattaaaaacatacaatatccgaggcctatt 11995119  T
Q  112 ccgatcacaaatccacatccgtatccaattgccactggtttccatccaaatccaaatttctcctcac 178  Q
    || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  11995118 ccaatcacaaatccacatccatatccaattgccactggtttccatccaaatccaaatttctcttcac 11995052  T

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Target: chr2; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 12 - 171
Target Start/End: Original strand, 12247712 - 12247871
Alignment:
Q  12 tcttgtccttcttttcactctcctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctatt 111  Q
    |||||| || ||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| | |||||||    
T  12247712 tcttgttctccttttcactcttcttttaggctgaccaccaaatatcatcacaagccatctaggctttccaattaaaaacatacaatatccgaggcctatt 12247811  T
Q  112 ccgatcacaaatccacatccgtatccaattgccactggtttccatccaaatccaaatttc 171  Q
    || ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  12247812 ccaatcacaaatccacatccatatccaattgccaccggtttccatccaaatccaaatttc 12247871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 23 - 139
Target Start/End: Complemental strand, 32682497 - 32682381
Alignment:
Q  23 ttttcactctcctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccgatcacaaa 122  Q
    |||||||||| |||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||    
T  32682497 ttttcactcttctcttaggatgaccaccaattatcatcacaagccatctaggctttccaattaaaaacataaagtatccaatgcctattccaatcacaaa 32682398  T
Q  123 tccacatccgtatccaa 139  Q
    ||||||||| |||||||    
T  32682397 tccacatccatatccaa 32682381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 55 - 173
Target Start/End: Complemental strand, 9423506 - 9423388
Alignment:
Q  55 atcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccgatcacaaatccacatccgtatccaattgccactggtttcc 154  Q
    ||||| ||| |||||||||||||||||||||| | |||| || |||||| |||| |||| | ||| | ||||||||| |||||||||||||||| |||||    
T  9423506 atcatcacaggccatctaggctttccaattaacagcatacaacatccaaggccttttccaagcaccattccacatccatatccaattgccactgatttcc 9423407  T
Q  155 atccaaatccaaatttctc 173  Q
    |||||||||||||||||||    
T  9423406 atccaaatccaaatttctc 9423388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 116; Significance: 3e-59; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 25523862 - 25523675
Alignment:
Q  1 ttcctcgtcattcttgtccttcttttcactctcctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatc 100  Q
    |||||| |||||||||||||| |||||||  | |||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||| ||||||    
T  25523862 ttcctcctcattcttgtcctttttttcacctttctcttaggctgaccgccaaatatcatcacaagccatctaggctttccaactaaaaacatacaatatc 25523763  T
Q  101 caatgcctattccgatcacaaatccacatccgtatccaattgccactggtttccatccaaatccaaatttctcctcaccgcaaaagtt 188  Q
    ||||||||||||| |||| |||||||||||| ||||||||| |||| ||| |||||||||||||||||||||| ||||  ||||||||    
T  25523762 caatgcctattccaatcagaaatccacatccatatccaattaccaccggtatccatccaaatccaaatttctcttcactccaaaagtt 25523675  T

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