View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11033_low_6 (Length: 557)
Name: NF11033_low_6
Description: NF11033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11033_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 502; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 7 - 541
Target Start/End: Complemental strand, 50804591 - 50804057
Alignment:
| Q |
7 |
gtgagatgaactaaaacatgttccattagtgcagtattaagacttaactaacttattgcttaatgagacaattcctaatttgcagtgataaactttttgt |
106 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50804591 |
gtgatatgaactaaaacatgttccattagtgcagtattaagacttaactaacttattgcttaatgagacaattcctaatttgcagtgataaactttttgt |
50804492 |
T |
|
| Q |
107 |
gcttcgtataaatgtgttgttaactagaaccatcaannnnnnnctttgttcaggactattgagtcgggttgaataacataattttatatcattgtatcta |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50804491 |
gcttcgtataaatgtgttgttaactagaaccatcaatttttttctttgttcaggactattgagtcgggttgaataacataattttatatcattgtatcta |
50804392 |
T |
|
| Q |
207 |
catctttttgtttgctttgtttggattgataggagatgcgttgtggaacaccgatgggcaaggagaatgcatttgcagcattgctcgagttatgccggag |
306 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50804391 |
catctttttgtttgctttgtttggattgataggagatgcgttgtggaacaccgatgggcaaggagaatgcatttgcagcattgctcgagttatgccggag |
50804292 |
T |
|
| Q |
307 |
tggaggttcagctgcaactgaaagggttgttaaggcaccacctattgccggattacttcaaacccaactatttaccgggacaaagcgagctagacgtaaa |
406 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50804291 |
tggaggttcagctgcaactgaaagggtggttaaggcaccacctattgccggattacttcaaacccaactatttaccgggacaaagcgagctagacgtaaa |
50804192 |
T |
|
| Q |
407 |
gctgcttcacttgctagagtgtttcagagatgtgaaaatgcatctctacattatggtggattaggtgtaggctatgcattggctagcaattcagctcaaa |
506 |
Q |
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| T |
50804191 |
gccgcttcacttgctagagtgtttcagagatgtgaaaatgcatctctacattatggtggattaggtgtaggctatgcattggctagcaattcagctcaaa |
50804092 |
T |
|
| Q |
507 |
ctagggattcaagctttgctgcagagggatgtttc |
541 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
50804091 |
ctagggattcaagctttgctgcagagggatgtttc |
50804057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 7 - 541
Target Start/End: Original strand, 50871286 - 50871820
Alignment:
| Q |
7 |
gtgagatgaactaaaacatgttccattagtgcagtattaagacttaactaacttattgcttaatgagacaattcctaatttgcagtgataaactttttgt |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50871286 |
gtgatatgaactaaaacatgttccattagtgcagtattaagacttaactaacttattgcttaatgagacaattcctaatttgcagtgataaactttttgt |
50871385 |
T |
|
| Q |
107 |
gcttcgtataaatgtgttgttaactagaaccatcaannnnnnnctttgttcaggactattgagtcgggttgaataacataattttatatcattgtatcta |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50871386 |
gcttcgtataaatgtgttgttaactagaaccatcaatttttttctttgttcaggactattgagtcgggttgaataacataattttatatcattgtatcta |
50871485 |
T |
|
| Q |
207 |
catctttttgtttgctttgtttggattgataggagatgcgttgtggaacaccgatgggcaaggagaatgcatttgcagcattgctcgagttatgccggag |
306 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50871486 |
catctttttgtttgctttgtttggattgataggagatgcgttgtggaacaccgatgggcaaggagaatgcatttgcagcattgctcgagttatgccggag |
50871585 |
T |
|
| Q |
307 |
tggaggttcagctgcaactgaaagggttgttaaggcaccacctattgccggattacttcaaacccaactatttaccgggacaaagcgagctagacgtaaa |
406 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50871586 |
tggaggttcagctgcaactgaaagggtggttaaggcaccacctattgccggattacttcaaacccaactatttaccgggacaaagcgagctagacgtaaa |
50871685 |
T |
|
| Q |
407 |
gctgcttcacttgctagagtgtttcagagatgtgaaaatgcatctctacattatggtggattaggtgtaggctatgcattggctagcaattcagctcaaa |
506 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50871686 |
gccgcttcacttgctagagtgtttcagagatgtgaaaatgcatctctacattatggtggattaggtgtaggctatgcattggctagcaattcagctcaaa |
50871785 |
T |
|
| Q |
507 |
ctagggattcaagctttgctgcagagggatgtttc |
541 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
50871786 |
ctagggattcaagctttgctgcagagggatgtttc |
50871820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 6 - 436
Target Start/End: Original strand, 19057593 - 19058025
Alignment:
| Q |
6 |
agtgagatgaactaaaacatgttccattagtgcagtattaagacttaactaacttattgcttaatgagacaattcctaatttgcagtgataaactttttg |
105 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
19057593 |
agtgatatgaactaaaacatgttccattagtgcagtattaagacttaactaacttattgcttaattagacaattcctaatttgcagtgataaactttttg |
19057692 |
T |
|
| Q |
106 |
tgcttcgtataaatgtgttgttaactagaaccatcaannnnnnnctttgttcaggactattgagtcgggttgaataacataattttatatcattgtatct |
205 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||| | |
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|
| T |
19057693 |
tgcttcttataaatgtgttgttaactagaaccatcaatttttttctttgttcaggactgttgagtcgggttgaataacatacttttatatcattgtattt |
19057792 |
T |
|
| Q |
206 |
acatctttttgtttgctttgtttggattgatagga--gatgcgttgtggaacaccgatgggcaaggagaatgcatttgcagcattgctcgagttatgccg |
303 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
19057793 |
acatctttttgtttgctttgtttggattgataggaatgatgcgttgtggaacaccgatgggtaaggagaatgcagttgcagcattgctcgagttatgccg |
19057892 |
T |
|
| Q |
304 |
gagtggaggttcagctgcaactgaaagggttgttaaggcaccacctattgccggattacttcaaacccaactatttaccgggacaaagcgagctagacgt |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
19057893 |
gagtggaggttcagctgcaactgaaagggtggttaaggcaccagctattgccggattacttcaaaccctactatttaccgggacaaagtgagctagacgt |
19057992 |
T |
|
| Q |
404 |
aaagctgcttcacttgctagagtgtttcagaga |
436 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
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|
| T |
19057993 |
aaagccgcttcacttgctagagtgtttcagaga |
19058025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 245; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 228 - 541
Target Start/End: Original strand, 5286030 - 5286344
Alignment:
| Q |
228 |
tggattgatagga--gatgcgttgtggaacaccgatgggcaaggagaatgcatttgcagcattgctcgagttatgccggagtggaggttcagctgcaact |
325 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5286030 |
tggattgataggaatgatgcgttgtggaacaccgaggggtaaggagaatgcagtcgcagcattgctcgagttatgccggagtggaggttcagctgcaact |
5286129 |
T |
|
| Q |
326 |
gaaagggttgttaaggcaccacctattgccggattacttcaaacccaactatttaccgggacaaagcgagctagacgtaaagctgcttcacttgctagag |
425 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
5286130 |
gaaagggtagttaaggcaccagctattgccggattacttcaaaccctattatttaccgggacaaagcgagctagacgtaaagccgcttcacttgctagag |
5286229 |
T |
|
| Q |
426 |
tgtttcagagatgtgaaaatgcatctctacattatggtggattaggtgtaggctatgcattggctagcaattcagctcaaactagggattcaagctttgc |
525 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
5286230 |
tgtttcagagatgtgaaaatgcatctctgcattacggtggattaggtgtaggctatgcatttgctagcaattcagctcaaactagagattcaagctttgc |
5286329 |
T |
|
| Q |
526 |
tgcagagggatgtttc |
541 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
5286330 |
tgcag-gggatgtttc |
5286344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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