View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11033_low_8 (Length: 452)
Name: NF11033_low_8
Description: NF11033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11033_low_8 |
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| [»] scaffold0707 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 19 - 438
Target Start/End: Complemental strand, 43719247 - 43718828
Alignment:
| Q |
19 |
gcaggctcgcatttgaacgaggccagttagagaaaacagtgtaggatggtatatgtattaatttcaaactactattctttgcccttgaacagattgctaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43719247 |
gcaggctcgcatttgaacgaggccagttagagaaaacagtgtaggatggtatatgtattaatttcaaactactattctttgcccttgaacagattgctaa |
43719148 |
T |
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| Q |
119 |
tatttgagagtcatgattaaatttcatgaaatccacttcagtattcaggttatcaatggtcttgataggttttctctttcccccgagaaattcctcacta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43719147 |
tatttgagagtcatgattaaatttcatgaaatccacttcagtattcaggttatcaatggtcttgataggttttctctttcccccgagaaattcctcacta |
43719048 |
T |
|
| Q |
219 |
ttgtaaatattcacaactccactggccgaaccagctgcaaaatgtgtccctactggagaagtacaaatggctgtgccgtttaaacagccttcatctacac |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43719047 |
ttgtaaatattcacaactccactggccgaaccagctgcaaaatgtgtccctactggagaagtacaaatggctgtgccgtttaaacagccttcatctacac |
43718948 |
T |
|
| Q |
319 |
ctttgtgcatacaagtccttgttctcagatcccaatggtaaatatggccatcgccaccagtgctcaacaacttttgtccatcttcagtaaaagctaacgc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43718947 |
ctttgtgcatacaagtccttgttctcagatcccaatggtaaatatggccatcgccaccagtgctcaacaacttttgtccatcttcagtaaaagctaacgc |
43718848 |
T |
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| Q |
419 |
acgggctgttccgttcatct |
438 |
Q |
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| T |
43718847 |
acgggctgttccgttcatct |
43718828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 19 - 438
Target Start/End: Complemental strand, 2093204 - 2092785
Alignment:
| Q |
19 |
gcaggctcgcatttgaacgaggccagttagagaaaacagtgtaggatggtatatgtattaatttcaaactactattctttgcccttgaacagattgctaa |
118 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||| ||||||||||||||||||| |
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| T |
2093204 |
gcaggctcgcatttgaacgcggccagttagagaaaacagtgtaggatggtatatgtactaatttcaaactgctgttcttcgcccttgaacagattgctag |
2093105 |
T |
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| Q |
119 |
tatttgagagtcatgattaaatttcatgaaatccacttcagtattcaggttatcaatggtcttgataggttttctctttcccccgagaaattcctcacta |
218 |
Q |
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|||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2093104 |
tatttgagagtcgtgattgaatttcatgaaatccacttcagtattcagattatcaatggtcttgataggctttctctttcccccgagaaattcctcacta |
2093005 |
T |
|
| Q |
219 |
ttgtaaatattcacaactccactggccgaaccagctgcaaaatgtgtccctactggagaagtacaaatggctgtgccgtttaaacagccttcatctacac |
318 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2093004 |
ttgtaaatattcacaactccactagccgaaccagctgcaaaatgcgtccctactggagaagtacaaagggctgtgccgtttaaacagccttcatctacac |
2092905 |
T |
|
| Q |
319 |
ctttgtgcatacaagtccttgttctcagatcccaatggtaaatatggccatcgccaccagtgctcaacaacttttgtccatcttcagtaaaagctaacgc |
418 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
2092904 |
ctttgtgtatacaagtccttgttctcagatcccaatggtaaatatggccatcaccaccagcgctcaacaatttttgtccatcttcagtaaaagctaacga |
2092805 |
T |
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| Q |
419 |
acgggctgttccgttcatct |
438 |
Q |
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|||| ||||||||||||||| |
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| T |
2092804 |
acggactgttccgttcatct |
2092785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0707 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: scaffold0707
Description:
Target: scaffold0707; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 312 - 374
Target Start/End: Original strand, 3421 - 3483
Alignment:
| Q |
312 |
tctacacctttgtgcatacaagtccttgttctcagatcccaatggtaaatatggccatcgcca |
374 |
Q |
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| T |
3421 |
tctacacctttatgcatgcaagtccttgtcctcagttcacaatggtaaatgtggccatcgcca |
3483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0707; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 57 - 150
Target Start/End: Original strand, 3225 - 3317
Alignment:
| Q |
57 |
gtgtaggatggtatatgtattaatttcaaactactattctttgcccttgaacagattgctaatatttgagagtcatgattaaatttcatgaaat |
150 |
Q |
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||||| ||||| |||||||||||||||||||| | ||||| | ||||||||||||||||||||||||| || | |||||||||||||||| |
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| T |
3225 |
gtgtatgatgggatatgtattaatttcaaactgcacttcttcatgcctgaacagattgctaatatttgagag-cagggttaaatttcatgaaat |
3317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 312 - 374
Target Start/End: Original strand, 33567030 - 33567092
Alignment:
| Q |
312 |
tctacacctttgtgcatacaagtccttgttctcagatcccaatggtaaatatggccatcgcca |
374 |
Q |
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||||||||||| ||||| ||||||||||| ||||| || ||||||||||| |||||||||||| |
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| T |
33567030 |
tctacacctttatgcatgcaagtccttgtcctcagttcacaatggtaaatgtggccatcgcca |
33567092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 57 - 150
Target Start/End: Original strand, 33566834 - 33566926
Alignment:
| Q |
57 |
gtgtaggatggtatatgtattaatttcaaactactattctttgcccttgaacagattgctaatatttgagagtcatgattaaatttcatgaaat |
150 |
Q |
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||||| ||||| |||||||||||||||||||| | ||||| | ||||||||||||||||||||||||| || | |||||||||||||||| |
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| T |
33566834 |
gtgtatgatgggatatgtattaatttcaaactgcacttcttcatgcctgaacagattgctaatatttgagag-cagggttaaatttcatgaaat |
33566926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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