View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11034_high_1 (Length: 497)
Name: NF11034_high_1
Description: NF11034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11034_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 6 - 482
Target Start/End: Complemental strand, 40174766 - 40174284
Alignment:
| Q |
6 |
aagtccactttctctaattactagactatcctccatttgatttacccttttaaccggtgagaaaatatttttaatattaatccaaatgattaaggcagta |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
40174766 |
aagtccactttctctaattactagactatcctccatttgatttacccttttaaccggtgagaaaatatttttaatattaatccaaataattaaggcaata |
40174667 |
T |
|
| Q |
106 |
taatacatttccgtcaattctcaatatgattatcacttaatcaactatttgtttaaaacaaattattggaatccatattgagggaactccaaaactgatg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40174666 |
taatacatttccgtcaattctcaatatgattatcacttaatcaactatttgtttaaaacaaattattggaatccatattgagggaactccaaaactgatg |
40174567 |
T |
|
| Q |
206 |
aacgagatgcacaaaaatgcttagaactaaggattgtgattgaagactg----ct--ttttagtcactcaattttactacactcgtaaacaagagaacaa |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| || || |||||||||| |||||||||||||||||||||||||||| || |
|
|
| T |
40174566 |
aacgagatgcacaaaaatgcttagaactaaggattgtgattgtagagtgtagactgcttttagtcacccaattttactacactcgtaaacaagagagaaa |
40174467 |
T |
|
| Q |
300 |
gagccgggtattctcaccttatgctgactgtatttctctctgatagcagtaatggaaggtgaactatgatagccattgtggtacaacaaatgcaatccct |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
40174466 |
gagccgggtattctcaccttatgctgactgtatttctctctgatagcagtaatggaaggtgaactatgatagccatttcggtacaacaaatgcaatccct |
40174367 |
T |
|
| Q |
400 |
caacacattcctgcaattctgatgcttggtaacctgtgtaatgccttagcatagagttctatacaaaagcatatgcatagttg |
482 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
40174366 |
caacacattcccgcaattctgatgcttggtaacctgtgtaatgccttagcatagagttctataccaaagcatatgcatagttg |
40174284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University