View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11034_low_3 (Length: 234)
Name: NF11034_low_3
Description: NF11034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11034_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 13 - 217
Target Start/End: Complemental strand, 14178234 - 14178030
Alignment:
| Q |
13 |
gcagagactaactccaaaataaaataacaaaaaacatattaaatccatagtgaagttgcagaaactctttagagtttcatcatcacacaaattaaatcaa |
112 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
14178234 |
gcagaaactaactccaaaataaaataacaaaaaacatattaaatccatagtaaagttgcagaaactcttaagaatttcatcatcacacaaattaaatcaa |
14178135 |
T |
|
| Q |
113 |
cacttgagtttacacaaaataatgcaagggatctaagagaaaaatacaaaataaaatgaaggataaatataccttgtggaatcagagcaatattgggaga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14178134 |
cacttgagtttacacaaaataatgcaagggatctaagagaaaaatacaaaataaaatgaaggataaatataccttgtggaatcagagcaatattgggaga |
14178035 |
T |
|
| Q |
213 |
gtttt |
217 |
Q |
| |
|
||||| |
|
|
| T |
14178034 |
gtttt |
14178030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 14178262 - 14178226
Alignment:
| Q |
42 |
aaaaacatattaaatccatagtgaagttgcagaaact |
78 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14178262 |
aaaaacatattaaatccatagtgaagttgcagaaact |
14178226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University