View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11035_high_12 (Length: 250)

Name: NF11035_high_12
Description: NF11035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11035_high_12
NF11035_high_12
[»] chr8 (17 HSPs)
chr8 (10-250)||(28307424-28307661)
chr8 (7-139)||(5990669-5990796)
chr8 (53-250)||(23799574-23799772)
chr8 (53-250)||(6813583-6813783)
chr8 (51-249)||(19752393-19752592)
chr8 (54-227)||(26403250-26403423)
chr8 (51-217)||(9765849-9766019)
chr8 (7-99)||(7493210-7493305)
chr8 (51-222)||(4696621-4696795)
chr8 (163-250)||(6127234-6127321)
chr8 (47-250)||(5702480-5702683)
chr8 (160-227)||(7412351-7412418)
chr8 (157-250)||(3051127-3051220)
chr8 (165-250)||(9054834-9054919)
chr8 (164-249)||(31071228-31071312)
chr8 (48-124)||(6127117-6127193)
chr8 (160-217)||(44721115-44721172)
[»] chr2 (33 HSPs)
chr2 (7-250)||(2869690-2869935)
chr2 (54-250)||(20522124-20522320)
chr2 (48-250)||(10445441-10445644)
chr2 (53-222)||(33118039-33118208)
chr2 (53-123)||(39482833-39482903)
chr2 (16-125)||(16388593-16388702)
chr2 (51-250)||(33528618-33528820)
chr2 (7-250)||(15903886-15904129)
chr2 (20-250)||(27149291-27149520)
chr2 (51-227)||(8039958-8040137)
chr2 (51-124)||(31055940-31056015)
chr2 (53-227)||(8390170-8390344)
chr2 (51-250)||(34682331-34682533)
chr2 (160-250)||(2838027-2838117)
chr2 (48-134)||(40014824-40014909)
chr2 (51-250)||(21629848-21630043)
chr2 (160-227)||(28259197-28259264)
chr2 (51-250)||(34388757-34388958)
chr2 (160-250)||(13569338-13569428)
chr2 (8-128)||(28770894-28771020)
chr2 (53-127)||(39532835-39532909)
chr2 (63-250)||(10707249-10707436)
chr2 (160-250)||(1345537-1345628)
chr2 (53-115)||(14699127-14699189)
chr2 (69-123)||(17865121-17865175)
chr2 (7-227)||(35397372-35397589)
chr2 (7-113)||(23078606-23078709)
chr2 (53-127)||(3277905-3277979)
chr2 (160-222)||(14699032-14699094)
chr2 (7-61)||(16388307-16388361)
chr2 (56-101)||(5699691-5699736)
chr2 (160-217)||(19502017-19502074)
chr2 (160-217)||(23452243-23452300)
[»] chr7 (25 HSPs)
chr7 (7-250)||(28617222-28617465)
chr7 (53-250)||(20283992-20284188)
chr7 (51-249)||(9190007-9190206)
chr7 (51-250)||(29159701-29159903)
chr7 (5-250)||(5817267-5817514)
chr7 (67-222)||(4796692-4796848)
chr7 (53-250)||(2647693-2647891)
chr7 (51-227)||(9185185-9185361)
chr7 (51-249)||(2580286-2580488)
chr7 (69-250)||(33332447-33332629)
chr7 (53-250)||(46516307-46516505)
chr7 (51-250)||(49091560-49091761)
chr7 (7-250)||(3047111-3047355)
chr7 (67-124)||(9235679-9235736)
chr7 (51-124)||(23403137-23403212)
chr7 (48-127)||(35960712-35960792)
chr7 (160-227)||(21983294-21983361)
chr7 (160-250)||(55958-56047)
chr7 (160-227)||(47263688-47263753)
chr7 (51-124)||(21988804-21988880)
chr7 (160-217)||(1046931-1046988)
chr7 (160-217)||(1049302-1049359)
chr7 (160-217)||(3035950-3036007)
chr7 (160-217)||(20297588-20297645)
chr7 (160-217)||(40946554-40946611)
[»] scaffold0148 (1 HSPs)
scaffold0148 (48-250)||(10626-10829)
[»] chr5 (24 HSPs)
chr5 (5-250)||(2630082-2630331)
chr5 (51-228)||(17003979-17004158)
chr5 (51-250)||(28832158-28832358)
chr5 (67-250)||(11181829-11182013)
chr5 (17-144)||(28537489-28537620)
chr5 (51-250)||(19588644-19588846)
chr5 (51-250)||(42127408-42127608)
chr5 (10-128)||(34842467-34842581)
chr5 (53-124)||(3880203-3880273)
chr5 (67-249)||(11916970-11917153)
chr5 (7-227)||(14520089-14520307)
chr5 (67-250)||(24553505-24553687)
chr5 (18-122)||(30899728-30899832)
chr5 (51-227)||(31300616-31300794)
chr5 (160-227)||(9353352-9353419)
chr5 (160-227)||(36932370-36932437)
chr5 (160-250)||(10281761-10281851)
chr5 (5-128)||(5611000-5611120)
chr5 (87-250)||(6741787-6741952)
chr5 (7-123)||(33031067-33031184)
chr5 (160-227)||(12084195-12084262)
chr5 (160-227)||(15464542-15464609)
chr5 (163-250)||(33030937-33031024)
chr5 (160-217)||(4410238-4410295)
[»] chr3 (30 HSPs)
chr3 (48-245)||(25929435-25929633)
chr3 (51-227)||(6794723-6794901)
chr3 (53-250)||(3328344-3328540)
chr3 (53-250)||(26298891-26299088)
chr3 (92-227)||(27986456-27986592)
chr3 (7-250)||(4386914-4387158)
chr3 (71-250)||(18552870-18553050)
chr3 (51-250)||(40592769-40592972)
chr3 (51-220)||(1417507-1417678)
chr3 (51-250)||(3715989-3716191)
chr3 (51-227)||(8370496-8370676)
chr3 (51-250)||(48438112-48438314)
chr3 (74-250)||(37466214-37466390)
chr3 (51-118)||(1417164-1417232)
chr3 (51-124)||(40844550-40844625)
chr3 (96-250)||(1736292-1736447)
chr3 (160-227)||(27974962-27975029)
chr3 (5-128)||(21156287-21156407)
chr3 (164-249)||(32143335-32143419)
chr3 (162-227)||(33386676-33386741)
chr3 (100-227)||(21711172-21711300)
chr3 (69-124)||(8126619-8126674)
chr3 (164-227)||(16264364-16264427)
chr3 (195-250)||(21353607-21353662)
chr3 (164-227)||(25795795-25795858)
chr3 (162-249)||(27452970-27453056)
chr3 (160-222)||(30709805-30709867)
chr3 (160-250)||(36029103-36029193)
chr3 (160-217)||(29100169-29100226)
chr3 (160-217)||(38210566-38210623)
[»] chr1 (22 HSPs)
chr1 (48-227)||(47703956-47704136)
chr1 (51-250)||(9023836-9024029)
chr1 (48-250)||(19072824-19073028)
chr1 (48-250)||(19120714-19120918)
chr1 (54-250)||(47098822-47099019)
chr1 (51-227)||(775570-775749)
chr1 (53-227)||(13598301-13598475)
chr1 (51-250)||(27104369-27104567)
chr1 (53-227)||(29651713-29651888)
chr1 (51-222)||(47102866-47103039)
chr1 (53-250)||(22819331-22819529)
chr1 (48-124)||(40816856-40816932)
chr1 (51-249)||(32889337-32889537)
chr1 (51-250)||(9476161-9476361)
chr1 (51-250)||(16124513-16124716)
chr1 (7-124)||(17345643-17345756)
chr1 (158-222)||(17345544-17345607)
chr1 (53-120)||(50521231-50521299)
chr1 (160-215)||(3281718-3281773)
chr1 (160-227)||(26644917-26644984)
chr1 (160-217)||(21536599-21536656)
chr1 (160-217)||(51752579-51752636)
[»] chr4 (28 HSPs)
chr4 (53-222)||(24333714-24333881)
chr4 (51-227)||(25862042-25862221)
chr4 (48-250)||(1983297-1983498)
chr4 (156-250)||(5112243-5112337)
chr4 (53-250)||(39245896-39246094)
chr4 (48-248)||(34495822-34496022)
chr4 (54-250)||(10047283-10047479)
chr4 (7-227)||(5269211-5269431)
chr4 (156-250)||(39774302-39774396)
chr4 (75-222)||(54867108-54867255)
chr4 (53-227)||(5143162-5143336)
chr4 (67-217)||(38152469-38152619)
chr4 (67-227)||(5147593-5147754)
chr4 (94-249)||(31985633-31985787)
chr4 (53-127)||(37781765-37781839)
chr4 (48-124)||(3796644-3796720)
chr4 (48-250)||(18377269-18377459)
chr4 (160-227)||(36315249-36315316)
chr4 (160-227)||(36329458-36329525)
chr4 (51-227)||(3777448-3777626)
chr4 (60-124)||(42599698-42599762)
chr4 (160-227)||(5396691-5396758)
chr4 (160-250)||(16623290-16623380)
chr4 (160-217)||(6765114-6765171)
chr4 (160-217)||(7941593-7941650)
chr4 (160-217)||(18847423-18847479)
chr4 (160-217)||(22134624-22134680)
chr4 (48-124)||(16630805-16630879)
[»] chr6 (19 HSPs)
chr6 (51-227)||(10077185-10077364)
chr6 (51-227)||(31936486-31936664)
chr6 (10-250)||(31076938-31077190)
chr6 (51-227)||(31979411-31979590)
chr6 (48-250)||(22963597-22963799)
chr6 (48-250)||(23824594-23824796)
chr6 (96-222)||(24435996-24436122)
chr6 (67-227)||(4629869-4630031)
chr6 (48-124)||(21801473-21801549)
chr6 (51-124)||(18232743-18232818)
chr6 (160-227)||(5757498-5757565)
chr6 (160-217)||(30967452-30967509)
chr6 (9-125)||(33721682-33721792)
chr6 (160-227)||(21356046-21356113)
chr6 (160-217)||(4816237-4816294)
chr6 (160-217)||(5273222-5273279)
chr6 (160-217)||(19704573-19704630)
chr6 (160-217)||(20915362-20915419)
chr6 (162-250)||(21801341-21801429)
[»] scaffold0006 (2 HSPs)
scaffold0006 (53-227)||(5586-5760)
scaffold0006 (51-227)||(2390-2569)
[»] scaffold0140 (1 HSPs)
scaffold0140 (160-227)||(8439-8506)
[»] scaffold0176 (1 HSPs)
scaffold0176 (69-127)||(17181-17239)
[»] scaffold0184 (1 HSPs)
scaffold0184 (5-64)||(29670-29729)
[»] scaffold0087 (1 HSPs)
scaffold0087 (160-227)||(43981-44048)
[»] scaffold0078 (2 HSPs)
scaffold0078 (5-64)||(43115-43174)
scaffold0078 (156-242)||(23534-23620)
[»] scaffold0154 (1 HSPs)
scaffold0154 (160-217)||(11479-11536)
[»] scaffold0025 (1 HSPs)
scaffold0025 (160-217)||(69298-69355)


Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 28307424 - 28307661
Alignment:
Q  10 aaaggaagtagtaatcaatgagtcaagtagcctcaagtagcagcaacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaacaa 109  Q
    ||||||||||||||||||||||||||||||||||||||| |    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28307424 aaaggaagtagtaatcaatgagtcaagtagcctcaagtaacg---acaacaacaaataaacctaaatctaagtgtataacagcaccacaagcataaacaa 28307520  T
Q  110 agcaataaagataagaaagcaagaatgaaataaactcgcctagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttca 209  Q
    ||||||||| ||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||    
T  28307521 agcaataaatataagaaagcaagaatgaaataaacacgccaagattggtaacccagttcggtccaaaatgacctactctggggatgagagcagctctcca 28307620  T
Q  210 atccactaagatggaagtaatacacatgggttacaagaaat 250  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  28307621 atccactaagatggaagtaatacacatgggttacaagaaat 28307661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 7 - 139
Target Start/End: Complemental strand, 5990796 - 5990669
Alignment:
Q  7 agcaaaggaagtagtaatcaatgagtcaagtagcctcaagtagcagcaacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaa 106  Q
    |||||||||||||||||||||||  | ||||||| |||||      ||||||||||||||||||||||||||||||||| ||||  ||||||||||||      
T  5990796 agcaaaggaagtagtaatcaatggataaagtagcatcaag------caacaacaacaaatagacctaaatctaagtgtagaacaaaaccacaagcatatt 5990703  T
Q  107 c-aaagcaataaagataagaaagcaagaatgaaa 139  Q
    | ||||||| ||||||||| ||||||||||||||    
T  5990702 caaaagcaacaaagataagcaagcaagaatgaaa 5990669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 250
Target Start/End: Complemental strand, 23799772 - 23799574
Alignment:
Q  53 caacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag-aaagcaagaatgaaataaactcgccta 151  Q
    ||||||||| ||||||||||| ||||||||||| |  || ||||||| ||||| |||||||||| ||||||| || | ||||| | || |||| | || |    
T  23799772 caacaacaaaaaatagacctagatctaagtgtagagaagtaccacaaacataatcaaagcaatagagataagcaatgaaagaaaggaacaaacacaccaa 23799673  T
Q  152 gatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaagaaat 250  Q
    ||| | | |||||||||||||||| |||||||| ||||| |  ||||||||| || |||||||||| |||| ||||  |||| | | ||||||||||||    
T  23799672 gattgttgacccagttcggtccaatatgacctaatttggaggagagagcagccctccaatccactatgatgaaagtgttacaaaagagttacaagaaat 23799574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 53 - 250
Target Start/End: Original strand, 6813583 - 6813783
Alignment:
Q  53 caacaacaacaaa-tagacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataagaaa-gcaagaatgaaataaac-tcgcc 149  Q
    ||||||||||||| ||||| ||| ||| |||||| |||| || ||||||||||| ||||||||||||||||||||| | ||||| | || |||| |  |     
T  6813583 caacaacaacaaaatagacttaagtcttagtgtagaacaacatcacaagcataatcaaagcaataaagataagaaatgaaagaaaggaacaaacatacca 6813682  T
Q  150 tagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaagaaa 249  Q
     |||| | |||||||||||||||||| || ||||||  | |||  |||||||||||| ||||||| ||||||| |||| | ||| | |||||||||||||    
T  6813683 aagattgttaacccagttcggtccaatataacctacactaggggagagagcagctctccaatccaataagatgaaagtgacacaaaggggttacaagaaa 6813782  T
Q  250 t 250  Q
    |    
T  6813783 t 6813783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 51 - 249
Target Start/End: Complemental strand, 19752592 - 19752393
Alignment:
Q  51 agcaacaacaacaaat-agacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag-aaagcaagaatgaaataaactcgc 148  Q
    |||||||||||||||  |||||||||||||||||||   || |||||||||||||| |||||||||| ||||||| || | ||||  | || |||| | |    
T  19752592 agcaacaacaacaaaacagacctaaatctaagtgtagtgcaacaccacaagcataatcaaagcaatagagataagtaatgaaagagaggaacaaacacac 19752493  T
Q  149 ctagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaagaa 248  Q
    | |||| | | ||| |||||||||||| |||||||| | | |||  |||||||||||| ||||||||||||||| ||||  |||| ||| ||||||||||    
T  19752492 caagattgttgacctagttcggtccaatatgacctagtctaggggagagagcagctctccaatccactaagatgaaagtgttaca-atgagttacaagaa 19752394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 227
Target Start/End: Complemental strand, 26403423 - 26403250
Alignment:
Q  54 aacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataagaaagcaagaatga--aataaactcgccta 151  Q
    |||||||| ||| ||||||||||||||||||| | || |||||||||||||| |||||||||||||||||| ||  || || ||  || |||| | || |    
T  26403423 aacaacaa-aaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagcaatgaa-aacgaggaacaaacacaccaa 26403326  T
Q  152 gatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagt 227  Q
    ||| | | |||||||||||||||| |||||||| | |||||  |||||||||||| |||||||||| |||| ||||    
T  26403325 gattgttgacccagttcggtccaatatgacctaatctgggggagagagcagctctccaatccactatgatgaaagt 26403250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 51 - 217
Target Start/End: Complemental strand, 9766019 - 9765849
Alignment:
Q  51 agcaacaacaacaaataga--cctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag-aaagcaagaatgaaataaactcg 147  Q
    ||||||||||||||| | |  |||||||||||||||| | || |||||||||||||| |||||||||||||||||| || | ||||| | || |||| |     
T  9766019 agcaacaacaacaaaaacaaacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagcaatgaaagaagggaacaaacaca 9765920  T
Q  148 ccta-gatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccacta 217  Q
    || | ||| | | |||||||||||||||| |||||||| | |||||  |||||||||||| ||||||||||    
T  9765919 ccaatgattgttgacccagttcggtccaatatgacctaatctgggggagagagcagctctccaatccacta 9765849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 99
Target Start/End: Complemental strand, 7493305 - 7493210
Alignment:
Q  7 agcaaaggaagtagtaatcaatgagtcaagtagcctcaagtagcagcaacaaca---acaaatagacctaaatctaagtgtataacagcaccacaa 99  Q
    ||||||||||||||||||||||| || |||||| |||||| |||||||||||||   ||||||||| ||||||||||||||| | || ||||||||    
T  7493305 agcaaaggaagtagtaatcaatgtgtaaagtagtctcaagcagcagcaacaacaacaacaaatagatctaaatctaagtgtagagcaacaccacaa 7493210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 51 - 222
Target Start/End: Complemental strand, 4696795 - 4696621
Alignment:
Q  51 agcaacaacaacaaata--gacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag-aaagcaagaatgaaataaactcg 147  Q
    ||||||||||||||| |  ||| |||||||||||||| | || |||||||| ||||| |||||||||||||||||| || | |||||   || |||| |     
T  4696795 agcaacaacaacaaaaacagacataaatctaagtgtagagcaacaccacaaacataatcaaagcaataaagataagcaatgaaagaaatgaacaaacaca 4696696  T
Q  148 cctagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatg 222  Q
    || |||| | | |||||||||| ||||| |||||||| | |||||  ||||||||| || |||||||||| ||||    
T  4696695 ccaagattgttgacccagttcgatccaatatgacctaatctgggggagagagcagccctccaatccactatgatg 4696621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 163 - 250
Target Start/End: Original strand, 6127234 - 6127321
Alignment:
Q  163 cagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaagaaat 250  Q
    ||||||||||||| |||||||| |||||||| |||||||||||| |||||||||| |||| ||||  |||| | | ||||||||||||    
T  6127234 cagttcggtccaatatgacctaatttggggaagagagcagctctccaatccactatgatgaaagtgttacaaaagagttacaagaaat 6127321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 250
Target Start/End: Complemental strand, 5702683 - 5702480
Alignment:
Q  47 tagcagcaacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag-aaagcaagaatgaaataaact 145  Q
    ||||| ||||||||| ||| ||||||| ||||||||||| | || ||||||||||||||  ||||||||| |||||||  | | | ||| | || ||||     
T  5702683 tagcaacaacaacaa-aaacagacctagatctaagtgtagagcatcaccacaagcataattaaagcaatagagataagctatgaaggaaaggaacaaaca 5702585  T
Q  146 cgcctagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaa 245  Q
    | || |||| | | |||||||||||||||| |||||||| | |||||  ||||||| | || |||||| ||| |||| ||||  |||| | | |||||||    
T  5702584 caccaagattgttgacccagttcggtccaatatgacctaatatgggggagagagcatccctccaatcccctatgatgaaagtgttacaaaagagttacaa 5702485  T
Q  246 gaaat 250  Q
    |||||    
T  5702484 gaaat 5702480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 7412351 - 7412418
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagt 227  Q
    |||||||||||||||| |||||||| | |||||  |||||||||||| |||||||||| |||| ||||    
T  7412351 acccagttcggtccaatatgacctaatatgggggagagagcagctctccaatccactatgatgaaagt 7412418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 250
Target Start/End: Original strand, 3051127 - 3051220
Alignment:
Q  157 gtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaagaaat 250  Q
    |||||||| ||||||| || || |||| || ||| |  ||||||| |||| ||||||||||||||| |||| ||||| ||| ||||||||||||    
T  3051127 gtaacccaattcggtctaatataacctcctctggaggagagagcacctctccaatccactaagatgaaagtgatacaaatgagttacaagaaat 3051220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 250
Target Start/End: Complemental strand, 9054919 - 9054834
Alignment:
Q  165 gttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaagaaat 250  Q
    |||| |||||| |||||||||| ||| |  ||||||||||||  |||||||||||||| |||| ||||| |  |||||||||||||    
T  9054919 gttcagtccaatatgacctactctggaggagagagcagctctctaatccactaagatgaaagtgatacaaagtggttacaagaaat 9054834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 249
Target Start/End: Complemental strand, 31071312 - 31071228
Alignment:
Q  164 agttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaagaaa 249  Q
    |||||||||||| |||||||| | |||||  |||||||||||| |||||||||| |||| ||||  |||| | |||||||||||||    
T  31071312 agttcggtccaatatgacctaatctgggggagagagcagctctccaatccactatgatgaaagtgttaca-aagggttacaagaaa 31071228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 124
Target Start/End: Original strand, 6127117 - 6127193
Alignment:
Q  48 agcagcaacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag 124  Q
    |||| ||||||||| ||| |||  ||||| |||||||| | || |||||||||||||| ||||||| ||||||||||    
T  6127117 agcaacaacaacaaaaaacagatataaatttaagtgtagagcaacaccacaagcataatcaaagcactaaagataag 6127193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 44721172 - 44721115
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccacta 217  Q
    ||||||||||||||||| ||||||| | || ||  |||||||||||| ||||||||||    
T  44721172 acccagttcggtccaaattgacctagtctgcgggagagagcagctctccaatccacta 44721115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 2869935 - 2869690
Alignment:
Q  7 agcaaaggaagtagtaatcaatgagtcaagtagcctcaagtagcagcaacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaa 106  Q
    ||||||||||||||| |||||||||| ||||||| ||||  | || ||||||||||||||||||||||||||||||||| | || ||||| |||||||      
T  2869935 agcaaaggaagtagtgatcaatgagtaaagtagcatcaaacaacaacaacaacaacaaatagacctaaatctaagtgtagagcaacaccataagcatatt 2869836  T
Q  107 caaagcaataaagataag-aaagcaagaatga-aataaactcgcctagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagct 204  Q
    |||||||| ||||||||| |||  ||| | || || |||| | || | || | | |||||||||||||||| |||||||||| | |||  ||||| ||||    
T  2869835 caaagcaacaaagataagcaaataaaggaagagaacaaacacaccaatattgtttacccagttcggtccaatatgacctactctaggggagagagtagct 2869736  T
Q  205 cttcaatccactaagatggaagtaatacacatgggttacaagaaat 250  Q
    || ||||||||||||||| |||| ||||| | | ||||||||||||    
T  2869735 ctccaatccactaagatgaaagtgatacaaaggagttacaagaaat 2869690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 250
Target Start/End: Original strand, 20522124 - 20522320
Alignment:
Q  54 aacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataagaaa-gcaagaatgaaataaactcgcctag 152  Q
    |||||||| ||| |||| || ||||||||||| | || |||||||||||||| ||||||||||||||||||||| | ||||| | || |||| | || ||    
T  20522124 aacaacaaaaaa-agacatagatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagaaatgaaagaaaggaacaaacacaccaag 20522222  T
Q  153 atcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaagaaat 250  Q
    || | | |||||||||||||||| |||||||| | |||||  ||||||| | || |||||||||| |||| ||||  |||| | ||||||||||||||    
T  20522223 attgttgacccagttcggtccaatatgacctaatctgggggagagagcaaccctccaatccactatgatgaaagtgttacaaaagggttacaagaaat 20522320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 48 - 250
Target Start/End: Complemental strand, 10445644 - 10445441
Alignment:
Q  48 agcagcaacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag-aaagcaagaatgaaataaactc 146  Q
    |||| ||||||||| ||| ||||||||||||||||||| | ||  ||||||||||||| |||||||||||||||||| || | ||||  | || |||| |    
T  10445644 agcaacaacaacaaaaaacagacctaaatctaagtgtagagcaaaaccacaagcataatcaaagcaataaagataagcaatgaaagagaggaacaaacac 10445545  T
Q  147 gcctagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaag 246  Q
     || |||| | | | |||||||||||||| |||||||| | |||||  |||||||||||| ||||||||||  ||| ||||  |||| | | ||||||||    
T  10445544 accaagattgttgatccagttcggtccaatatgacctaatctgggggagagagcagctctccaatccactattatgaaagtgttacaaaagagttacaag 10445445  T
Q  247 aaat 250  Q
    ||||    
T  10445444 aaat 10445441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 53 - 222
Target Start/End: Original strand, 33118039 - 33118208
Alignment:
Q  53 caacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag-aaagcaagaatgaaataaactcgccta 151  Q
    ||||||||| ||| ||||||||||||||||||| | || |||||||||||||| ||||| |||||||||||| || | ||||| | || |||| | || |    
T  33118039 caacaacaa-aaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagtaataaagataagcaatgaaagaaaggaacaaacacaccaa 33118137  T
Q  152 gatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatg 222  Q
    ||| | |  | ||||||||||||| |||||||| |||||||  ||||||||| || |||||||||| ||||    
T  33118138 gattgttggctcagttcggtccaatatgacctaatttgggggagagagcagccctccaatccactatgatg 33118208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 39482833 - 39482903
Alignment:
Q  53 caacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataa 123  Q
    ||||||||| ||| ||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||    
T  39482833 caacaacaaaaaacagacctaaatctaagtgtagaacaacaccacaagcataaccaaagcaataaagataa 39482903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 16388702 - 16388593
Alignment:
Q  16 agtagtaatcaatgagtcaagtagcctcaagtagcagcaacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaacaaagcaat 115  Q
    ||||||||||||||||| |||||| |||||| |||||||||||||||||| ||||||| || || ||||  | || ||| | |||||||  |||||||||    
T  16388702 agtagtaatcaatgagtaaagtagtctcaagcagcagcaacaacaacaaacagacctagatgtatgtgtgaagcaacactataagcatatccaaagcaat 16388603  T
Q  116 aaagataaga 125  Q
    ||||||||||    
T  16388602 aaagataaga 16388593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 51 - 250
Target Start/End: Complemental strand, 33528820 - 33528618
Alignment:
Q  51 agcaacaacaacaaata--gacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagat-aagaaagcaagaatgaaataaactcg 147  Q
    ||||||||||||||| |  |||||| |||||| |||| | || |||||||||||||| ||||||||||||||| || || | ||||| | || |||| |     
T  33528820 agcaacaacaacaaaaacagacctagatctaaatgtagagcaacaccacaagcataatcaaagcaataaagataaacaatgaaagaaaggaacaaacaca 33528721  T
Q  148 cctagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaaga 247  Q
    || |||| | | |||||||||||||||| |||||||| | |||| | ||||||| | || |||||||||| |||| ||||  |||| | | |||||||||    
T  33528720 ccaagattgttgacccagttcggtccaatatgacctaatatgggaaagagagcaaccctccaatccactatgatgaaagtgttacaaaagagttacaaga 33528621  T
Q  248 aat 250  Q
    |||    
T  33528620 aat 33528618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 15904129 - 15903886
Alignment:
Q  7 agcaaaggaagtagtaatcaatgagtcaagtagcctcaagtagcagcaacaacaac-aaatagacctaaatctaagtgtataacagcaccacaagcataa 105  Q
    |||||||| ||| ||||||||||||  ||||| ||||||| | || |||||||||| ||| ||  ||||| ||| ||||| |||| ||||||||||||||    
T  15904129 agcaaagggagtggtaatcaatgagcaaagtatcctcaagcaacaacaacaacaacgaaacagttctaaaactatgtgtaaaacatcaccacaagcataa 15904030  T
Q  106 acaaagcaataaagataagaaagcaagaatg-aaataaactcgcctagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagct 204  Q
     ||||| ||  ||||||||||| |||||| | ||| |||  | || |||| ||||||| |||||| ||||| |||||||||| ||  |  ||||| |  |    
T  15904029 ccaaaggaa-caagataagaaatcaagaaagaaaacaaatacaccaagat-ggtaacctagttcgatccaatatgacctactctgacggagagagaaaat 15903932  T
Q  205 cttcaatccactaagatggaagtaatacacatgggttacaagaaat 250  Q
    || ||||||||||||||  |||| ||||| | ||||||||||||||    
T  15903931 ctccaatccactaagataaaagtgatacaaaggggttacaagaaat 15903886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 250
Target Start/End: Complemental strand, 27149520 - 27149291
Alignment:
Q  20 gtaatcaatgagtcaagtagcctcaagtagcagcaacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaacaaagcaa-taaa 118  Q
    ||||||||||||| ||||||||||||||| ||  ||||||||  |||||  ||||||||| ||||| | ||  |||| || ||||  |||| ||| ||||    
T  27149520 gtaatcaatgagtaaagtagcctcaagtaacaataacaacaa--aatagttctaaatctatgtgtaaagcaataccataaacatattcaaatcaactaaa 27149423  T
Q  119 gataagaaagcaagaatgaaat-aaactcgcctagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccacta 217  Q
    ||||||| ||||| |||||||  |||| | |  |||  ||||||| |||| ||||||| |||||||||| |||||  |||||||||||| ||||||||||    
T  27149422 gataagagagcaataatgaaaacaaacacaca-agactggtaaccaagtttggtccaatatgacctactatgggggagagagcagctctccaatccacta 27149324  T
Q  218 agatggaagtaatacacatgggttacaagaaat 250  Q
      ||| |||| ||||| | |||| |||||||||    
T  27149323 taatgaaagtgatacaaaggggtaacaagaaat 27149291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 51 - 227
Target Start/End: Original strand, 8039958 - 8040137
Alignment:
Q  51 agcaacaacaacaaata--gacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataagaaagcaagaat-gaaataaactcg 147  Q
    ||||||||||||||| |  |||||||||||||||||| | || |||||||||||||| |||||||||||||||||| ||  ||| |  | || |||  |     
T  8039958 agcaacaacaacaaaaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagcaatgaaggagaggaaaaaataca 8040057  T
Q  148 cctagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagt 227  Q
     | |||| | | ||||||||| |||||| |||||||| | |||||  |||||||||||| |||||||||| |||| ||||    
T  8040058 tcaagattgttgacccagttcagtccaatatgacctaatctgggggagagagcagctctccaatccactatgatgaaagt 8040137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 51 - 124
Target Start/End: Original strand, 31055940 - 31056015
Alignment:
Q  51 agcaacaacaacaaata--gacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag 124  Q
    ||||||||||||||| |  |||||||||||||||||| | || |||||||||||||| ||||||||||||||||||    
T  31055940 agcaacaacaacaaaaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataag 31056015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 227
Target Start/End: Complemental strand, 8390344 - 8390170
Alignment:
Q  53 caacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag-aaagcaagaatgaaataaactcgccta 151  Q
    ||||||||| ||  ||||||| ||||||||||| | || |||||||||||||| |||||| | |||||||||  | | |||||   || |||| | || |    
T  8390344 caacaacaaaaaccagacctagatctaagtgtagagcaacaccacaagcataatcaaagc-acaaagataagcgatgaaagaaatgaacaaacacaccaa 8390246  T
Q  152 gatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagt 227  Q
     || | | ||||||||||||||||||||||||| |||||||  |||||||||||| |||||||||| |||| ||||    
T  8390245 aattgttgacccagttcggtccaaaatgacctaatttgggggagagagcagctctccaatccactatgatgaaagt 8390170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 51 - 250
Target Start/End: Complemental strand, 34682533 - 34682331
Alignment:
Q  51 agcaacaacaacaaata--gacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag-aaagcaagaatgaaataaactcg 147  Q
    ||||||||||||||| |  |||||||||||||||||| | || |||||||||||||| ||||  |||||| ||||| || | ||||  | || |||| |     
T  34682533 agcaacaacaacaaaaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaacaaataaatataagcaatgaaagagaggaacaaacaca 34682434  T
Q  148 cctagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaaga 247  Q
    || |||| | | |||||||||||||||| ||||| || | |||||  |||||||||||| ||||||||||  ||| ||||  |||| | | |||||||||    
T  34682433 ccaagattgttgacccagttcggtccaatatgacataatctgggggagagagcagctctccaatccactataatgaaagtgttacaaaagagttacaaga 34682334  T
Q  248 aat 250  Q
    |||    
T  34682333 aat 34682331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 250
Target Start/End: Complemental strand, 2838117 - 2838027
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaagaaat 250  Q
    |||||||||||||||| |||||||||| |||||  |||||||  ||| ||||||||||| ||| |||| ||||| ||| ||||||||||||    
T  2838117 acccagttcggtccaatatgacctactctgggggagagagcacatctccaatccactaaaatgaaagtgatacaaatgagttacaagaaat 2838027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 134
Target Start/End: Original strand, 40014824 - 40014909
Alignment:
Q  48 agcagcaacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataagaaagcaagaa 134  Q
    |||| ||||||||||||| || |||||| ||||||||| |||| |||||||||||||| ||||||||  ||||||||||| ||||||    
T  40014824 agcaacaacaacaacaaacagtcctaaaactaagtgtaaaacatcaccacaagcataatcaaagcaa-caagataagaaaccaagaa 40014909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 51 - 250
Target Start/End: Original strand, 21629848 - 21630043
Alignment:
Q  51 agcaacaacaacaaat-agacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataagaaa-gcaagaatgaaataaactcgc 148  Q
    |||||||||||||||  ||||||| ||||||||||| | |||||||||||       |||||||||||||||||| || | ||||| | || |||| | |    
T  21629848 agcaacaacaacaaaacagacctagatctaagtgtagagcagcaccacaatt-----caaagcaataaagataagcaatgaaagaaaggaacaaacacac 21629942  T
Q  149 ctagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaagaa 248  Q
    | |||| | | ||||||||| |||||| |||||||| | |||||| |||||||||||| |||||||||| |||| ||||  |||| | | ||||||||||    
T  21629943 caagattgttgacccagttcagtccaatatgacctaatctgggga-gagagcagctctccaatccactatgatgaaagtgttacaaaagagttacaagaa 21630041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 28259264 - 28259197
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagt 227  Q
    |||||||||||||||| |||||||| |||||||  |||||||||||| |||||||||| |||| ||||    
T  28259264 acccagttcggtccaatatgacctaatttgggggagagagcagctctccaatccactatgatgaaagt 28259197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 250
Target Start/End: Original strand, 34388757 - 34388958
Alignment:
Q  51 agcaacaacaacaaata--gacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag-aaagcaagaatgaaataaactcg 147  Q
    ||||||||||||||| |  |||||| ||||||||||| | || ||||||||||| || |||||||  ||||||||  |||| ||||| | || |||| |     
T  34388757 agcaacaacaacaaaaacagacctagatctaagtgtagagcaacaccacaagcaaaatcaaagcac-aaagataaacaaagaaagaaaggaacaaacaca 34388855  T
Q  148 cctagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaaga 247  Q
    || |||| | | ||||| |||||||||| |||||||| | |||||  ||||| |||||| |||||||||| |||| ||||  |||| | | |||||||||    
T  34388856 ccgagattgttgacccaattcggtccaatatgacctaatctgggggagagagtagctctccaatccactatgatgaaagtgttacaaaagagttacaaga 34388955  T
Q  248 aat 250  Q
    |||    
T  34388956 aat 34388958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 250
Target Start/End: Original strand, 13569338 - 13569428
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaagaaat 250  Q
    |||||||||||||||| |||||||| | |||||  |||||||||||| |||||||||| |||| ||||  |||| | | ||||||||||||    
T  13569338 acccagttcggtccaatatgacctaatctgggggagagagcagctctccaatccactatgatgaaagtgttacaaaagagttacaagaaat 13569428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 28771020 - 28770894
Alignment:
Q  8 gcaaaggaagtagtaatcaatgagtcaagtagcctcaa---gtagcagcaacaac---aacaaatagacctaaatctaagtgtataacagcaccacaagc 101  Q
    ||||| ||||||||||||||||||  |||||| | |||   |||||| |||||||   |||||||||||||| ||||||||||  | || ||||||||||    
T  28771020 gcaaatgaagtagtaatcaatgagcgaagtagtcgcaaacagtagcaacaacaactacaacaaatagacctagatctaagtgtgaagcaacaccacaagc 28770921  T
Q  102 ataaacaaagcaataaagataagaaag 128  Q
    |||| |||||||| ||| |||| ||||    
T  28770920 ataatcaaagcaaaaaatataataaag 28770894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 39532835 - 39532909
Alignment:
Q  53 caacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataagaaa 127  Q
    ||||||||| |||||||||||||||||||||   | || |||||||| ||||| | |||||||||||||||||||    
T  39532835 caacaacaataaatagacctaaatctaagtgcgaagcaacaccacaaacataacctaagcaataaagataagaaa 39532909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 63 - 250
Target Start/End: Complemental strand, 10707436 - 10707249
Alignment:
Q  63 aaatagacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag-aaagcaagaatgaaataaactcgcctagatcggtaac 161  Q
    ||||| ||||| ||||||||||| | || |||  ||||||||| |||||||  ||||||||| |||| |||||   ||||||| | || |||| | | ||    
T  10707436 aaatatacctagatctaagtgtagagcaacactgcaagcataatcaaagcac-aaagataagcaaagaaagaaatgaataaacacaccgagattgttgac 10707338  T
Q  162 ccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaagaaat 250  Q
    |||||||||||||| |||||||| | |||||  |||| || |||| |||||||||| |||| ||||  |||| | | ||||||||||||    
T  10707337 ccagttcggtccaatatgacctaatatgggggagagaacaactctccaatccactatgatgaaagtgttacaaaagagttacaagaaat 10707249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 250
Target Start/End: Complemental strand, 1345628 - 1345537
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccac-taagatggaagtaatacacatgggttacaagaaat 250  Q
    |||||||||||||||| |||||||||| |||||  ||||||| |||| | |||||| ||||||| |||| ||||| ||| ||| ||||||||    
T  1345628 acccagttcggtccaatatgacctactctgggggagagagcacctctccgatccacttaagatgaaagtgatacaaatgagttgcaagaaat 1345537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 53 - 115
Target Start/End: Complemental strand, 14699189 - 14699127
Alignment:
Q  53 caacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaacaaagcaat 115  Q
    ||||||||| ||  ||||||||||||||||||| | || |||||||||||||| |||||||||    
T  14699189 caacaacaaaaagcagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaat 14699127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 123
Target Start/End: Original strand, 17865121 - 17865175
Alignment:
Q  69 acctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataa 123  Q
    ||||| ||||||||||| | || |||||||||||||| |||||||||||||||||    
T  17865121 acctagatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataa 17865175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 35397372 - 35397589
Alignment:
Q  7 agcaaaggaagtagtaatcaatgagtcaagtagcctcaagtagcagcaacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaa 106  Q
    |||| ||||||||||||||||||||| || |  |||||   |||| ||||||||  ||||| ||||||||||| ||| | | ||  |||||||||||||     
T  35397372 agcagaggaagtagtaatcaatgagtgaaatgacctca---agcaacaacaaca--aaatatacctaaatctatgtgcagagcaaaaccacaagcataat 35397466  T
Q  107 caaagcaataaagataag-aaagcaagaatgaaataaactcgcctagatcggtaacccagttcggtccaaaatgacctac-tttggggatgagagcagct 204  Q
    ||||||||| || ||||| || | ||||| |||| |||| | || | || | | |||||||||||| |||  | |||||| | ||| |  || |||||||    
T  35397467 caaagcaatcaatataagcaatgaaagaaggaaacaaacacaccaatattgtttacccagttcggttcaatctaacctacatctggaggagatagcagct 35397566  T
Q  205 cttcaatccactaagatggaagt 227  Q
    |||||||||||||||||| ||||    
T  35397567 cttcaatccactaagatgaaagt 35397589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 113
Target Start/End: Complemental strand, 23078709 - 23078606
Alignment:
Q  7 agcaaaggaagtagtaatcaatgagtcaagtagcctcaagtagcagcaacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaa 106  Q
    |||||||||||| |||||||||| || |||| | ||| |  |||| ||||||||| ||| | ||||| ||||||||||| | || ||||||||||||||     
T  23078709 agcaaaggaagtggtaatcaatgtgtaaagt-gtctcca--agcaacaacaacaaaaaacatacctagatctaagtgtagagcaacaccacaagcataat 23078613  T
Q  107 caaagca 113  Q
    |||||||    
T  23078612 caaagca 23078606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 3277905 - 3277979
Alignment:
Q  53 caacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataagaaa 127  Q
    ||||||||||||||||| ||| ||||||||||  | || ||| |||| ||||  |||||||| ||||||||||||    
T  3277905 caacaacaacaaatagatctagatctaagtgtgaagcaacactacaaacatattcaaagcaaaaaagataagaaa 3277979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 14699094 - 14699032
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatg 222  Q
    |||||||||||||||| |||||||| | |||||  ||||||||| || |||||||||| ||||    
T  14699094 acccagttcggtccaatatgacctaatctgggggagagagcagccctccaatccactatgatg 14699032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 16388307 - 16388361
Alignment:
Q  7 agcaaaggaagtagtaatcaatgagtcaagtagcctcaagtagcagcaacaacaa 61  Q
    ||||||| |||||||||||||||| | |||||| |||||| |||| |||||||||    
T  16388307 agcaaagaaagtagtaatcaatgaataaagtagtctcaagcagcaacaacaacaa 16388361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 5699691 - 5699736
Alignment:
Q  56 caacaacaaatagacctaaatctaagtgtataacagcaccacaagc 101  Q
    |||||||||||||||||| ||||||||||| | || ||||||||||    
T  5699691 caacaacaaatagacctagatctaagtgtaaagcaacaccacaagc 5699736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 19502017 - 19502074
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccacta 217  Q
    ||||||||||||||||| ||||||| | |||||  ||||||||| |||| ||||||||    
T  19502017 acccagttcggtccaaattgacctagtctgggggagagagcagcccttcgatccacta 19502074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 23452243 - 23452300
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccacta 217  Q
    ||||||||||||||||| ||||||| | |||||  ||||||||| || ||||||||||    
T  23452243 acccagttcggtccaaattgacctagtctgggggagagagcagccctccaatccacta 23452300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 28617465 - 28617222
Alignment:
Q  7 agcaaaggaagtagtaatcaatgagtcaagtagcctcaagtagcagcaacaacaacaaatagacctaaatctaagtgtataa-cagcaccacaagcataa 105  Q
    |||||||||||| ||||||||||||| ||||||||||||| | ||  ||||||||  ||||||||||| ||| || ||| || || |||||||||||||     
T  28617465 agcaaaggaagtggtaatcaatgagtaaagtagcctcaagaaacaagaacaacaa--aatagacctaagtcttagagtaaaagcaacaccacaagcatat 28617368  T
Q  106 acaaagcaataaagataagaaagcaagaatgaaat-aaactcgcctagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagct 204  Q
     |||||||| ||||||||| ||| ||| | ||||  |||| | || | || | | |||||||||||||||| |||||||||| |||||  ||||||||||    
T  28617367 tcaaagcaacaaagataagcaagaaaggaagaaaacaaacacaccaatattgtttacccagttcggtccaatatgacctactctgggggagagagcagct 28617268  T
Q  205 cttcaatccactaagatggaagtaatacacatgggttacaagaaat 250  Q
    || ||||||||||||||| |||| |||||   ||||||||||||||    
T  28617267 ctccaatccactaagatgaaagtgatacaatggggttacaagaaat 28617222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 53 - 250
Target Start/End: Original strand, 20283992 - 20284188
Alignment:
Q  53 caacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataagaaa-gcaagaatgaaataaactcgccta 151  Q
    ||||||||| ||| ||||||||||||||||||| | || |||||||||||||| ||||||||||||||||||||| | ||||| | || |||| | || |    
T  20283992 caacaacaa-aaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagaaatgaaagaaaggaacaaacacaccaa 20284090  T
Q  152 gatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaagaaat 250  Q
    ||| | | |||||||||||||||| |||||||| | |||||  ||||||||| || ||||||||||||||| ||||  |||| ||| ||||||||||||    
T  20284091 gattgttgacccagttcggtccaatatgacctaatctgggggagagagcagccctccaatccactaagatgaaagtgttaca-atgcgttacaagaaat 20284188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 51 - 249
Target Start/End: Complemental strand, 9190206 - 9190007
Alignment:
Q  51 agcaacaacaacaaat-agacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag-aaagcaagaatgaaataaactcgc 148  Q
    |||||||||||||||  | ||||| ||||||||||| | || ||||||||||||||||||||||||||||||||| || | ||||  | || |||| | |    
T  9190206 agcaacaacaacaaaacaaacctagatctaagtgtagagcaacaccacaagcataaacaaagcaataaagataagcaatgaaagagaggaacaaacacac 9190107  T
Q  149 ctagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaagaa 248  Q
    | |||| | | |||||||||||||||| |||||||| | |||||  |||||||||||| ||||||||||||||| ||||  |||| ||| ||||||||||    
T  9190106 caagattgttgacccagttcggtccaatatgacctagtctgggggagagagcagctctccaatccactaagatgaaagtgttaca-atgagttacaagaa 9190008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 51 - 250
Target Start/End: Original strand, 29159701 - 29159903
Alignment:
Q  51 agcaacaacaacaaata--gacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag-aaagcaagaatgaaataaactcg 147  Q
    ||||||||||||||| |  |||||||||||||||||| | || |||||||||||||| |||||||||||||||||| || | ||||  | || |||| |     
T  29159701 agcaacaacaacaaaaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagcaatgaaagagaggaacaaacaca 29159800  T
Q  148 cctagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaaga 247  Q
    || |||| | | |||||||||||||||| |||||||| | | |||  |||||||||||| |||||||||| |||| ||||  |||| | | |||||||||    
T  29159801 ccaagattgttgacccagttcggtccaatatgacctaatctaggggagagagcagctctccaatccactatgatgaaagtgttacaaaagagttacaaga 29159900  T
Q  248 aat 250  Q
    |||    
T  29159901 aat 29159903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 5 - 250
Target Start/End: Complemental strand, 5817514 - 5817267
Alignment:
Q  5 gaagcaaaggaagtagtaatcaatgagtcaagtagcctcaagtagcagcaacaacaacaaa-tagacctaaatctaagtgtataacagcaccacaagcat 103  Q
    ||||||||| ||||| |||||||||    ||||||| ||||  | || ||||||||||||| ||||| ||| ||  |||||| |||| ||||||||||||    
T  5817514 gaagcaaagtaagtattaatcaatggacaaagtagcatcaaacaacaacaacaacaacaaaatagacataagtcctagtgtagaacaacaccacaagcat 5817415  T
Q  104 aaacaaagcaataaagataagaaa-gcaagaatgaaataaactcgccta-gatcggtaacccagttcggtccaaaatgacctactttggggatgagagca 201  Q
    || |||  |||||| |||||| || | ||||| | || |||| | || | ||| | |||| ||||||||||||| |||||||||| |||||| |||||||    
T  5817414 aatcaacacaataatgataagcaatgtaagaaaggaacaaacacaccaaagattgttaactcagttcggtccaatatgacctactctgggga-gagagca 5817316  T
Q  202 gctcttcaatccactaagatggaagtaatacacatgggttacaagaaat 250  Q
    ||||| ||||||||||| ||| |||| ||||| | ||||||||||||||    
T  5817315 gctctccaatccactaatatgaaagtgatacaaaggggttacaagaaat 5817267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 67 - 222
Target Start/End: Complemental strand, 4796848 - 4796692
Alignment:
Q  67 agacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag-aaagcaagaatgaaataaactcgcctagatcggtaacccag 165  Q
    ||||||||||||||||||| | || |||||||||||||| |||||||||||||||||| || |  |||| | || |||| | || |||| | ||||||||    
T  4796848 agacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagcaatgagagaaaggaacaaacacaccaagattgttaacccag 4796749  T
Q  166 ttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatg 222  Q
    ||||||||||||||||||| | |||||  || |||||| ||  ||||||||| ||||    
T  4796748 ttcggtccaaaatgacctaatctgggggagaaagcagccctcaaatccactatgatg 4796692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 53 - 250
Target Start/End: Complemental strand, 2647891 - 2647693
Alignment:
Q  53 caacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag-aaagcaagaatgaaataaactcgccta 151  Q
    ||||||||| ||| |||||||||||||||| || | || |||||||||||||| |||||||||||||||||| || | ||||| | || |||| |  | |    
T  2647891 caacaacaaaaaacagacctaaatctaagtttagagcaacaccacaagcataatcaaagcaataaagataagcaatgaaagaaaggaacaaacacatcaa 2647792  T
Q  152 gatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaagaaat 250  Q
    ||| | | ||||| ||||| |||| |||||||| | |||||  ||||||||| || |||||||||| |||| ||||  |||| | | ||||||||||||    
T  2647791 gattgttgacccaattcggcccaatatgacctattctgggggagagagcagccctccaatccactatgatgaaagtgttacaaaagagttacaagaaat 2647693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 51 - 227
Target Start/End: Complemental strand, 9185361 - 9185185
Alignment:
Q  51 agcaacaacaacaaat-agacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag-aaagcaagaatgaaataaactcgc 148  Q
    |||||||||||||||  ||||||| ||||||||||| |  | ||||||||||||||||||||||||||||||||| || | ||||  | || |||  | |    
T  9185361 agcaacaacaacaaaacagacctagatctaagtgtagagaaacaccacaagcataaacaaagcaataaagataagcaatgaaagagaggaacaaa--cac 9185264  T
Q  149 ctagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagt 227  Q
    | |||| | | |||||||||||||||| || ||||| | |||||  ||||| |||||| ||||||||||||||| ||||    
T  9185263 caagattgttgacccagttcggtccaatataacctagtctgggggagagagaagctctccaatccactaagatgaaagt 9185185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 51 - 249
Target Start/End: Original strand, 2580286 - 2580488
Alignment:
Q  51 agcaacaacaacaaat-agacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataagaaagcaagaatga----aataaact 145  Q
    |||||||||||||||  ||||||||||||||||||| |    ||||||||| |||| |||||||||||||||||| ||  || || ||    || ||||     
T  2580286 agcaacaacaacaaaacagacctaaatctaagtgtagagatacaccacaagtataaccaaagcaataaagataagcaatgaaaaaagagaggaacaaaca 2580385  T
Q  146 cgcctagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaa 245  Q
    | || |||| | | ||||| |||||||||| |||||||| | |||||  |||||||||||| ||||||||||||||| ||||  |||| ||| |||||||    
T  2580386 caccaagattgttgacccaattcggtccaatatgacctagtctgggggagagagcagctctccaatccactaagatgaaagtgttaca-atgagttacaa 2580484  T
Q  246 gaaa 249  Q
    ||||    
T  2580485 gaaa 2580488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 69 - 250
Target Start/End: Complemental strand, 33332629 - 33332447
Alignment:
Q  69 acctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag-aaagcaagaatgaaataaactcgcctagatcggtaacccagtt 167  Q
    ||||||||||||||||| | || ||||| |||||||| |||| ||||||||||||| || | ||||| | || |||| | || |||| | | ||||||||    
T  33332629 acctaaatctaagtgtagagcaacaccataagcataatcaaatcaataaagataagcaatgaaagaaaggaacaaacacaccaagattgttgacccagtt 33332530  T
Q  168 cggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaagaaat 250  Q
    || || || |||||||| | |||||  ||||||||| || ||||||||||||||| ||||  |||| | | ||||||||||||    
T  33332529 cgatctaatatgacctaatctgggggagagagcagccctccaatccactaagatgaaagtgttacaaaagagttacaagaaat 33332447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 53 - 250
Target Start/End: Complemental strand, 46516505 - 46516307
Alignment:
Q  53 caacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagat-aagaaagcaagaatgaaataaactcgccta 151  Q
    ||||||||| ||| |||| |||||||||||||| | || ||||| |||||||| |||||||||| |||| || || | ||||| | || |||| | || |    
T  46516505 caacaacaaaaaacagacttaaatctaagtgtaaagcaacaccaaaagcataatcaaagcaatagagataaacaatgaaagaaaggaacaaacacaccaa 46516406  T
Q  152 gatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaagaaat 250  Q
    ||| | | |||||||||||||||| |||||||| | | |||  ||||||||| || |||||||||| |||| ||||  |||| | | ||||||||||||    
T  46516405 gattgttgacccagttcggtccaatatgacctaatctaggggagagagcagccctccaatccactatgatgaaagtgttacaaaagagttacaagaaat 46516307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 250
Target Start/End: Original strand, 49091560 - 49091761
Alignment:
Q  51 agcaacaacaacaaata--gacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataagaaa-gcaagaatgaaataaactcg 147  Q
    ||||||||||||||| |  |||||| || |||||||| | || |||||||||||||| |||||||  ||||||||| || | ||||| | || |||| |     
T  49091560 agcaacaacaacaaaaacagacctagatttaagtgtagagcaacaccacaagcataatcaaagcac-aaagataagcaatgaaagaaaggaacaaacgca 49091658  T
Q  148 cctagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaaga 247  Q
    || |||| | | ||||||||  |||||| |||||||| | |||||| ||||||| |||| |||||||||| |||| ||||  |||| | | |||||||||    
T  49091659 ccaagattgttgacccagtttagtccaatatgacctaatctggggaagagagcaactctccaatccactatgatgaaagtgttacaaaagagttacaaga 49091758  T
Q  248 aat 250  Q
    |||    
T  49091759 aat 49091761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 250
Target Start/End: Original strand, 3047111 - 3047355
Alignment:
Q  7 agcaaaggaagtagtaatcaatgagtcaagtagcctcaagtagcagcaacaacaacaaa-tagacctaaatctaagtgtataacagcaccacaagcataa 105  Q
    ||||||| ||||  |||||||||||| ||||  ||||||| | || |||||| |||||| |||  ||||| ||  ||||| | || ||||||||||||||    
T  3047111 agcaaagaaagtgataatcaatgagtaaagtgtcctcaagcaacaacaacaataacaaaatagttctaaaactgtgtgtaaagcaacaccacaagcataa 3047210  T
Q  106 acaaagcaataaagataagaaagcaagaatgaaat-aaactcgcctagatcggtaacccagttcggtccaaaatgacctactttggggat-gagagcagc 203  Q
     |||| ||| || ||||| |||||||||| ||||  |||| | || |||||| |||||||||||||||||| ||||||| || |||||   |||||| |     
T  3047211 tcaaatcaacaa-gataataaagcaagaaagaaaacaaacacaccaagatcg-taacccagttcggtccaatatgacctgctctggggggagagagccgt 3047308  T
Q  204 tcttcaatccactaagatggaagtaatacacatgggttacaagaaat 250  Q
    | | ||||||||||| ||| ||||  |||| ||| ||||||||||||    
T  3047309 tatccaatccactaatatgaaagtggtacaaatgagttacaagaaat 3047355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 9235736 - 9235679
Alignment:
Q  67 agacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag 124  Q
    |||||||||||||| |||| | || |||||||||||||| ||||||||||||||||||    
T  9235736 agacctaaatctaaatgtagagcaacaccacaagcataatcaaagcaataaagataag 9235679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 124
Target Start/End: Complemental strand, 23403212 - 23403137
Alignment:
Q  51 agcaacaacaacaaata--gacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag 124  Q
    ||||||||||||||| |  ||||||||| |||||||| | || |||||||||||||| |||||||||||| |||||    
T  23403212 agcaacaacaacaaaaacagacctaaatgtaagtgtagagcaacaccacaagcataatcaaagcaataaatataag 23403137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 48 - 127
Target Start/End: Original strand, 35960712 - 35960792
Alignment:
Q  48 agcagcaacaacaacaaat-agacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataagaaa 127  Q
    |||| |||||||||||||  || |||||||||||||||| |  | |||||| |||||||| ||||||||||||||||||||    
T  35960712 agcaacaacaacaacaaaacaggcctaaatctaagtgtagagaaacaccaccagcataaataaagcaataaagataagaaa 35960792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 21983294 - 21983361
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagt 227  Q
    |||||||||||||||| |||||||| | |||||  |||||||||||| |||||||||| |||| ||||    
T  21983294 acccagttcggtccaatatgacctaatctgggggagagagcagctctccaatccactatgatgaaagt 21983361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 250
Target Start/End: Original strand, 55958 - 56047
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaagaaat 250  Q
    |||||||||||||||| |||||||| | |||||| ||||||||| || |||||||||| |||| ||||  |||| | | ||||||||||||    
T  55958 acccagttcggtccaatatgacctaatctgggga-gagagcagccctccaatccactatgatgaaagtgttacaaaagagttacaagaaat 56047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 47263688 - 47263753
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagt 227  Q
    |||||||||||||||| |||||||| | |||||  |||||||||||| |||||||||| |||| ||||    
T  47263688 acccagttcggtccaatatgacctaatatgggg--gagagcagctctccaatccactatgatgaaagt 47263753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 124
Target Start/End: Original strand, 21988804 - 21988880
Alignment:
Q  51 agcaacaacaacaaat---agacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag 124  Q
    |||||||||||||||    ||||||||||||  ||||| | || |||||||| ||||| ||||||||||||||||||    
T  21988804 agcaacaacaacaaactccagacctaaatctgggtgtagagcaacaccacaaacataatcaaagcaataaagataag 21988880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 1046931 - 1046988
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccacta 217  Q
    ||||||||||||||||| ||||||| | |||||  ||||||||| || ||||||||||    
T  1046931 acccagttcggtccaaattgacctagtgtgggggagagagcagccctccaatccacta 1046988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 1049302 - 1049359
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccacta 217  Q
    ||||||||||||||||| ||||||| | |||||  ||||||||| || ||||||||||    
T  1049302 acccagttcggtccaaattgacctagtctgggggagagagcagccctccaatccacta 1049359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 3036007 - 3035950
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccacta 217  Q
    ||||||||||||||||| ||||||| | |||||  ||||||||| || ||||||||||    
T  3036007 acccagttcggtccaaattgacctagtctgggggagagagcagccctccaatccacta 3035950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 20297645 - 20297588
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccacta 217  Q
    ||||||||||||||||| ||||||| | |||||  ||||||||| || ||||||||||    
T  20297645 acccagttcggtccaaattgacctagtctgggggagagagcagccctccaatccacta 20297588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 40946611 - 40946554
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccacta 217  Q
    ||||||||||||||||| ||||||| | |||||  ||||||||| |||| ||||||||    
T  40946611 acccagttcggtccaaattgacctagtctgggggagagagcagcccttcgatccacta 40946554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 48 - 250
Target Start/End: Original strand, 10626 - 10829
Alignment:
Q  48 agcagcaacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag-aaagcaagaatgaaataaactc 146  Q
    |||| ||||||||| ||| ||||||||||||||||||| | || |||||||||||||| |||||||||||||||||| || | ||||  | || |||| |    
T  10626 agcaacaacaacaaaaaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagcaatgaaagagaggaacaaacac 10725  T
Q  147 gcctagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaag 246  Q
     || ||||   | |||||||||||||||| |||||||| |||||||  |||||||||||| ||||||||||||||| ||||  |||| | | ||||||||    
T  10726 accaagattattgacccagttcggtccaatatgacctaatttgggggagagagcagctctccaatccactaagatgaaagtgttacaaaagagttacaag 10825  T
Q  247 aaat 250  Q
    ||||    
T  10826 aaat 10829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 5 - 250
Target Start/End: Original strand, 2630082 - 2630331
Alignment:
Q  5 gaagcaaaggaagtagtaatcaatgagtcaagtagcctcaagtagcagcaacaacaa---caaatagacctaaatctaagtgtataacagcaccacaagc 101  Q
    ||||||||||||||||||| |||||| | ||||||||||||| | || |||||||||   ||||||| |||||||||||||| | | || ||||||||||    
T  2630082 gaagcaaaggaagtagtaagcaatgaataaagtagcctcaagcaacaacaacaacaaaaacaaataggcctaaatctaagtgcagagcaacaccacaagc 2630181  T
Q  102 ataaacaaagcaataaagataagaaagca-agaatgaaataaactcgcctagatcggtaacccagttcggtccaaaatgacctactttggggatgagagc 200  Q
    |||   ||||||||| ||||||||| | | ||||| ||| |||| |  | | || | ||||| |||||||||||| ||||||| ||||| ||  || |||    
T  2630182 atatttaaagcaatagagataagaaggaagagaataaaacaaacgcatcaatattgttaacctagttcggtccaatatgacctgctttgagggagatagc 2630281  T
Q  201 agctcttcaatccactaagatggaagtaatacacatgggttacaagaaat 250  Q
    ||||||||||||||||| |||| |||| ||||| | ||||||||| ||||    
T  2630282 agctcttcaatccactatgatgaaagtgatacaaaagggttacaataaat 2630331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 51 - 228
Target Start/End: Complemental strand, 17004158 - 17003979
Alignment:
Q  51 agcaacaacaacaaata--gacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataagaaa-gcaagaatgaaataaactcg 147  Q
    ||||||||||||||| |  |||||||||||||||||| | || |||||||||||||| |||||||| ||||||||| || | ||||| | || |||| |     
T  17004158 agcaacaacaacaaaaacagacctaaatctaagtgta-agcaacaccacaagcataatcaaagcaaaaaagataagcaatgaaagaaaggaacaaacaca 17004060  T
Q  148 cctagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagta 228  Q
    || |||| | | |||||||||||||||| |||||||| | |||||  ||||||||||||||||||||||| |||| |||||    
T  17004059 ccaagattgttgacccagttcggtccaatatgacctaatctgggggagagagcagctcttcaatccactatgatgaaagta 17003979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 51 - 250
Target Start/End: Original strand, 28832158 - 28832358
Alignment:
Q  51 agcaacaacaacaaata--gacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataagaaa-gcaagaatgaaataaactcg 147  Q
    ||||||||||||||| |  ||||||| |||||||||| | || |||||||||||||| |||| ||||||||||||| || | |||||  ||| |||| |     
T  28832158 agcaacaacaacaaaaacagacctaa-tctaagtgtagagcaacaccacaagcataatcaaatcaataaagataagcaatgaaagaaacaaacaaacaca 28832256  T
Q  148 cctagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaaga 247  Q
    || |||| | | |||| ||||||||||| |||||||| | |||||  ||||||||| || ||||||||||||||| ||||  |||| ||| |||||||||    
T  28832257 ccaagattgttgacccggttcggtccaatatgacctaatctgggggagagagcagccctccaatccactaagatgaaagtgttaca-atgagttacaaga 28832355  T
Q  248 aat 250  Q
    |||    
T  28832356 aat 28832358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 250
Target Start/End: Complemental strand, 11182013 - 11181829
Alignment:
Q  67 agacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataagaaa-gcaagaatgaaataaactcgcctagatcggtaacccag 165  Q
    |||| |||||||||||||| | ||  ||||||||||||| |||||||||||||||||| || | |||||   || |||| | || |||| ||||||| ||    
T  11182013 agacttaaatctaagtgtagagcaataccacaagcataatcaaagcaataaagataagcaatgaaagaaatgaacaaacacaccaagat-ggtaacctag 11181915  T
Q  166 ttcggtccaaaatgacctacttt-ggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaagaaat 250  Q
    ||||||| || |||||||||| | ||||  ||||||| | || ||||||||||||||| |||| ||||| ||| ||||||||||||    
T  11181914 ttcggtctaatatgacctactctagggggagagagcaaccctccaatccactaagatgaaagtgatacaaatgagttacaagaaat 11181829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 28537489 - 28537620
Alignment:
Q  17 gtagtaatcaatgagtcaagtagcctcaagtagcagcaacaacaacaaatagaccta---aatctaagtgtataacagcaccacaagcataaac-aaagc 112  Q
    |||||||||||||||| |||||| |||||| | || ||||||||||||| | ||  |   |||||||||||| ||||||||||||| ||||| | ||| |    
T  28537489 gtagtaatcaatgagtaaagtagtctcaagcaacaacaacaacaacaaaaaaacagacataatctaagtgtaaaacagcaccacaaacataatcaaaatc 28537588  T
Q  113 aataaagataagaaagcaagaatgaaataaac 144  Q
    || |||||||||||||||||||||||| ||||    
T  28537589 aacaaagataagaaagcaagaatgaaacaaac 28537620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 51 - 250
Target Start/End: Original strand, 19588644 - 19588846
Alignment:
Q  51 agcaacaacaacaaata--gacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag-aaagcaagaatgaaataaactcg 147  Q
    ||||||||||||||| |  |||||||||||||||||| | || |||||||||||||| |||||||||||||||||| || | ||||| | || |||| |     
T  19588644 agcaacaacaacaaaaaaagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagcaatgaaagaaaggaacaaacact 19588743  T
Q  148 cctagatcggtaacccagttcggtccaaaatgacctact-ttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaag 246  Q
    |  |||| | | |||||||||||||||| |||| ||| | || |||| ||||||||| || |||||||||| |||| ||||  |||| | | ||||||||    
T  19588744 caaagattgttgacccagttcggtccaatatgaactaatcttaggga-gagagcagccctccaatccactatgatgaaagtgttacaaaagagttacaag 19588842  T
Q  247 aaat 250  Q
    ||||    
T  19588843 aaat 19588846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 51 - 250
Target Start/End: Complemental strand, 42127608 - 42127408
Alignment:
Q  51 agcaacaacaacaaat-agacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag-aaagcaagaatgaaataaactcgc 148  Q
    |||||||||||||||  |||| ||||||||| |||| | || |||||||||||||| |||| ||||||||||||| || | ||||| | || |||| | |    
T  42127608 agcaacaacaacaaaacagacttaaatctaattgtagagcaacaccacaagcataatcaaaacaataaagataagcaatgaaagaaaggaacaaacacac 42127509  T
Q  149 ctagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaagaa 248  Q
    | |||| | | |||||||||| || || |||||||| | |||||  ||||||||| |  ||||||||||||||| ||||  |||| ||| ||||||||||    
T  42127508 caagattgttgacccagttcgatctaatatgacctaatctgggggagagagcagccccccaatccactaagatgaaagtgttaca-atgagttacaagaa 42127410  T
Q  249 at 250  Q
    ||    
T  42127409 at 42127408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 10 - 128
Target Start/End: Original strand, 34842467 - 34842581
Alignment:
Q  10 aaaggaagtagtaatcaatgagtcaagtagcctcaagtagcagcaacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaacaa 109  Q
    |||||||||||||||||| |||| |||||||||||||   |||||||||||| ||| | ||||| ||||||||||  | || |||||||||||||  | |    
T  34842467 aaaggaagtagtaatcaa-gagtaaagtagcctcaag---cagcaacaacaataaacaaacctagatctaagtgtgaagcaacaccacaagcatatccga 34842562  T
Q  110 agcaataaagataagaaag 128  Q
    ||||| |||||||||||||    
T  34842563 agcaacaaagataagaaag 34842581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 124
Target Start/End: Original strand, 3880203 - 3880273
Alignment:
Q  53 caacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag 124  Q
    ||||||||| ||| ||||||||||||||||||| | || |||||||||||||| ||||||||||||||||||    
T  3880203 caacaacaa-aaacagacctaaatctaagtgtaaagcaacaccacaagcataatcaaagcaataaagataag 3880273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 67 - 249
Target Start/End: Complemental strand, 11917153 - 11916970
Alignment:
Q  67 agacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataagaaagca-agaatgaaataaactcgcctagatcggtaacccag 165  Q
    ||||||| |||| |||||| | || |||||||||||||||||  |||||||||||||| ||  | |||| | || |||| | || |||| | | ||||||    
T  11917153 agacctagatcttagtgtagagcaacaccacaagcataaacagtgcaataaagataagcaatgagagaaaggaacaaacacaccgagattgttgacccag 11917054  T
Q  166 ttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaagaaa 249  Q
    |||||||||| |||||||| | |||||  |||||||||||| ||||||||||  ||| ||||  |||| | | |||||||||||    
T  11917053 ttcggtccaatatgacctaatatgggggagagagcagctctccaatccactataatgaaagtgttacaaaagagttacaagaaa 11916970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 14520089 - 14520307
Alignment:
Q  7 agcaaaggaagtagtaatcaatgagtcaagtagcctcaagtagcagcaacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaa 106  Q
    |||||||||||| |||||||||| || |||| | ||| |  |||| ||||||||| ||| ||||||| ||||||||||| | || |||||||||||||||    
T  14520089 agcaaaggaagtggtaatcaatgtgtaaagt-gtctcca--agcaacaacaacaa-aaacagacctagatctaagtgtagagcaacaccacaagcataaa 14520184  T
Q  107 caaagcaataaagataagaaa-gcaagaatgaaataaactcgccta--gatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagc 203  Q
    |||||||  ||||||||| |  | ||||| | || |||| | || |  ||| | | |||||||||||||||| |||||||| | | |||  |||||||||    
T  14520185 caaagcac-aaagataagcactgaaagaaaggaacaaacacaccaaaagattgttgacccagttcggtccaatatgacctaatctaggggggagagcagc 14520283  T
Q  204 tcttcaatccactaagatggaagt 227  Q
    |||||||||||||| |||| ||||    
T  14520284 tcttcaatccactatgatgaaagt 14520307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 250
Target Start/End: Complemental strand, 24553687 - 24553505
Alignment:
Q  67 agacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag-aaagcaagaatgaaataaactcgcctagatcggtaacccag 165  Q
    ||||||||||||||||||| |  | |||||||||||||| |||||||||||||||||| || | ||||| | || |||| | || |||| | | | ||||    
T  24553687 agacctaaatctaagtgtagagaaacaccacaagcataatcaaagcaataaagataagcaatgaaagaaaggaacaaacacaccaagattgttgatccag 24553588  T
Q  166 ttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaagaaat 250  Q
    |||||||||| |||||||| | |  ||  ||||||||| || || |||||||||||| ||||  |||| ||| ||||||||||||    
T  24553587 ttcggtccaatatgacctaatctatgggagagagcagc-ctccactccactaagatgaaagtgttaca-atgagttacaagaaat 24553505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 30899728 - 30899832
Alignment:
Q  18 tagtaatcaatgagtcaagtagcctcaagtagcagcaacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataa 117  Q
    ||||||||||||||  ||||||||||||| | || ||||||||||| ||||||||| ||| ||||||  | || ||||||||| |||| |||| ||| ||    
T  30899728 tagtaatcaatgagcaaagtagcctcaagcaacaacaacaacaacacatagacctagatcaaagtgttaagcaacaccacaagtataaccaaaacaacaa 30899827  T
Q  118 agata 122  Q
    |||||    
T  30899828 agata 30899832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 227
Target Start/End: Complemental strand, 31300794 - 31300616
Alignment:
Q  51 agcaacaacaacaaat-agacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag-aaagcaagaatgaaataaactcgc 148  Q
    ||||| |||||||||  ||||||||||||||||||| | || |||||||||  ||| |||| ||||||||||||| || | ||||  | || |||| | |    
T  31300794 agcaaaaacaacaaaacagacctaaatctaagtgtagagcaacaccacaagtgtaatcaaaacaataaagataagcaatgaaagagaggaacaaacacac 31300695  T
Q  149 ctagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagt 227  Q
    | |||| | | |||||||||||||||| |||||||| | || ||  ||||| | |||| ||||||||||||||| ||||    
T  31300694 caagattgttgacccagttcggtccaatatgacctagtctgagggagagagaaactctccaatccactaagatgaaagt 31300616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 9353419 - 9353352
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagt 227  Q
    |||||||||||||||| |||||||| | |||||  |||||||||||| |||||||||| |||| ||||    
T  9353419 acccagttcggtccaatatgacctaatctgggggagagagcagctctccaatccactatgatgaaagt 9353352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 36932437 - 36932370
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagt 227  Q
    |||||||||||||||| |||||||| | |||||  |||||||||||| |||||||||| |||| ||||    
T  36932437 acccagttcggtccaatatgacctaatctgggggagagagcagctctccaatccactatgatgaaagt 36932370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 250
Target Start/End: Original strand, 10281761 - 10281851
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaagaaat 250  Q
    |||||||||||||||| |||||||  | |||||  |||||||||||| |||||||||| |||| ||||  |||| | | ||||||||||||    
T  10281761 acccagttcggtccaatatgacctgatctgggggagagagcagctctccaatccactatgatgaaagtgttacaaaagagttacaagaaat 10281851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 5611000 - 5611120
Alignment:
Q  5 gaagcaaaggaagtagtaatcaatgagtcaagtagcctcaagtagcagcaacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcata 104  Q
    |||||||| ||||||||||||||||||| |||||| || |   |||| ||| || |||||| | ||||| ||||||| ||  |||| ||||| ||| |||    
T  5611000 gaagcaaatgaagtagtaatcaatgagtaaagtagtctta---agcaacaaaaataacaaacaaacctagatctaagagtgaaacaacaccataagaata 5611096  T
Q  105 aacaaagcaataaagataagaaag 128  Q
      |||||||| |||||||||||||    
T  5611097 ttcaaagcaacaaagataagaaag 5611120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 250
Target Start/End: Original strand, 6741787 - 6741952
Alignment:
Q  87 aacagcaccacaagcataaacaaagcaataaagataagaaa-gcaagaatgaaataaactcgccta-gatcggtaacccagttcggtccaaaatgaccta 184  Q
    |||| |||||||||||||| |||||||||||||||||| || | |||||   || |||| | || | |||   |||| ||||||||| ||| ||||| ||    
T  6741787 aacaacaccacaagcataatcaaagcaataaagataagcaatgaaagaaatgaacaaacacaccaaagattattaacacagttcggttcaatatgacata 6741886  T
Q  185 ctttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaagaaat 250  Q
    || |||||   ||||||||||| ||||||| |||||||||||| ||||| |   ||||||||||||    
T  6741887 ctctgggggatagagcagctctccaatccattaagatggaagtgatacaaagaagttacaagaaat 6741952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 33031184 - 33031067
Alignment:
Q  7 agcaaaggaagtagtaatcaatgagtcaagt-agcctcaagtagcagcaacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataa 105  Q
    |||||||||| ||||||| ||||  | |||| | ||||||| | || ||||||||||||||| |  |||||||||||||| | ||  ||||| || ||||    
T  33031184 agcaaaggaaatagtaattaatggataaagtgatcctcaagcaccaacaacaacaacaaataaatataaatctaagtgtagagcaataccacgagaataa 33031085  T
Q  106 acaaagcaataaagataa 123  Q
     |||||||||||||||||    
T  33031084 tcaaagcaataaagataa 33031067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 12084262 - 12084195
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagt 227  Q
    |||||||||||||||  |||||||| | |||||  |||||||||||| |||||||||| |||| ||||    
T  12084262 acccagttcggtccactatgacctaatatggggcagagagcagctctccaatccactatgatgaaagt 12084195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 15464542 - 15464609
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagt 227  Q
    |||||||||||||||| |||| ||| | |||||  |||||||||||| |||||||||| |||| ||||    
T  15464542 acccagttcggtccaatatgatctaatctgggggagagagcagctctccaatccactatgatgaaagt 15464609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 250
Target Start/End: Complemental strand, 33031024 - 33030937
Alignment:
Q  163 cagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaagaaat 250  Q
    |||||||||| || ||||| |||| |||||  |||||||||||| |||| |||||||||| |||| || ||   ||||||||||||||    
T  33031024 cagttcggtcaaatatgacatactctgggggagagagcagctctccaattcactaagatgaaagtgatgcaatggggttacaagaaat 33030937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 4410295 - 4410238
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccacta 217  Q
    ||||||||||||||||  ||||||| | |||||  |||||||||||| ||||||||||    
T  4410295 acccagttcggtccaatctgacctagtctgggggagagagcagctctccaatccacta 4410238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 48 - 245
Target Start/End: Complemental strand, 25929633 - 25929435
Alignment:
Q  48 agcagcaacaacaacaaat-agacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataagaaagcaagaatg--aaataaac 144  Q
    |||| |||||||||||||  | ||||||||||||||||| | || |||||||| ||||| |||||||| ||||||||||||||||||| |  ||| ||||    
T  25929633 agcaacaacaacaacaaaacaaacctaaatctaagtgtagagcaacaccacaaacataatcaaagcaacaaagataagaaagcaagaaagaaaaacaaac 25929534  T
Q  145 tcgcctagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttaca 244  Q
     | || |||| |||||||||||||||||||| | |||||||| |||||  ||||||||| || ||||||||||||||| |||| ||||| ||| ||||||    
T  25929533 acaccaagat-ggtaacccagttcggtccaatacgacctactctgggg-ggagagcagccctccaatccactaagatgaaagtgatacaaatgagttaca 25929436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 51 - 227
Target Start/End: Complemental strand, 6794901 - 6794723
Alignment:
Q  51 agcaacaacaacaaat-agacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag-aaagcaagaatgaaataaactcgc 148  Q
    |||||||||||||||  ||||||||||||||||||| |  |||| ||||||||||| |||||||||| ||||||| || | ||||| | || |||| | |    
T  6794901 agcaacaacaacaaaacagacctaaatctaagtgtagagtagcatcacaagcataatcaaagcaatagagataagcaatgaaagaaaggaacaaacacac 6794802  T
Q  149 ctagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagt 227  Q
    | |||| | | |||| ||| ||||||| |||||||| | |||||  |||||||||||| |||||||||| |||| ||||    
T  6794801 caagattgttgacccggttaggtccaatatgacctaatatgggggagagagcagctctccaatccactatgatgaaagt 6794723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 53 - 250
Target Start/End: Complemental strand, 3328540 - 3328344
Alignment:
Q  53 caacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag-aaagcaagaatgaaataaactcgccta 151  Q
    ||||||||| ||| ||||||||||||||||||| | || |||||||||||||| |||| ||||||||||||| || | ||||  | || |||| | || |    
T  3328540 caacaacaa-aaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaaacaataaagataagcaatgaaagagaggaacaaacacaccaa 3328442  T
Q  152 gatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaagaaat 250  Q
    ||| | | |||||||||  ||||| |||||||| | | | |  ||||||||| |||||||||||||||||| ||||  |||| ||| ||||||||||||    
T  3328441 gattgttgacccagttcattccaatatgacctaatctagaggagagagcagcccttcaatccactaagatgaaagtgttaca-atgagttacaagaaat 3328344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 53 - 250
Target Start/End: Original strand, 26298891 - 26299088
Alignment:
Q  53 caacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag-aaagcaagaatgaaataaactcgccta 151  Q
    ||||||||| ||| ||||||||||||||||||| | || |||||||||||||| |||||||||||||||||| || | ||||  | || |||| | || |    
T  26298891 caacaacaa-aaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagcaacgaaagagaggaacaaacacaccaa 26298989  T
Q  152 gatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaagaaat 250  Q
    ||| | | |||||||||||| ||| ||||| || | |||||  ||||||||| || ||||| |||| |||| ||||  |||| | | ||||||||||||    
T  26298990 gattgttgacccagttcggttcaatatgacataatctgggggagagagcagccctccaatctactatgatgaaagtgttacaaaagagttacaagaaat 26299088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 92 - 227
Target Start/End: Complemental strand, 27986592 - 27986456
Alignment:
Q  92 caccacaagcataaacaaagcaataaagataagaaagcaagaatgaaataaactcgccta--gatcggtaacccagttcggtccaaaatgacctactttg 189  Q
    ||||||||||||| ||||||||||||||||||| ||| |||||||||  |||| | || |  ||| | | |||||||||||||||| |||||||| | ||    
T  27986592 caccacaagcatatacaaagcaataaagataagcaagaaagaatgaac-aaacacaccaaaagattgttgacccagttcggtccaatatgacctaatctg 27986494  T
Q  190 gggatgagagcagctcttcaatccactaagatggaagt 227  Q
    |||  |||||||||||| |||||||||| |||| ||||    
T  27986493 ggggagagagcagctctccaatccactatgatgaaagt 27986456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 4387158 - 4386914
Alignment:
Q  7 agcaaaggaagtagtaatcaatgagtcaagtagcctcaagtagcagcaacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaa 106  Q
    ||||||| |||||||||||||||||| ||||||||  ||| | || |||||| || ||| |||||||| ||| | |||| |||| | ||||| ||||||     
T  4387158 agcaaagaaagtagtaatcaatgagtaaagtagccataagcaacaacaacaaaaaaaaa-agacctaagtcttaatgtagaacaacgccacatgcataat 4387060  T
Q  107 caaagcaataaagataagaaa-gcaagaatgaaataaactcgccta-gatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagct 204  Q
    |||| ||||||||||||| || | ||||| | || |||| |  | | ||| | | ||||||||  || ||  |||||||||| |||||  ||||||||||    
T  4387059 caaaacaataaagataagcaatgaaagaaaggaacaaacacatcaaagattgtttacccagtttagttcagtatgacctactctgggggagagagcagct 4386960  T
Q  205 cttcaatccactaagatggaagtaatacacatgggttacaagaaat 250  Q
    || ||||||| ||||||  |||| ||||| ||||||||||||||||    
T  4386959 ctccaatccaataagataaaagtgatacaaatgggttacaagaaat 4386914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 71 - 250
Target Start/End: Complemental strand, 18553050 - 18552870
Alignment:
Q  71 ctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataagaaa-gcaagaatgaaataaactcgcctagatcggtaacccagttcg 169  Q
    ||||||||||||||| | || |||||||| ||||| |||||||||||||||||  || | ||||| | || |||  | || |||| | | ||||||||||    
T  18553050 ctaaatctaagtgtagagcaacaccacaaacataatcaaagcaataaagataatcaatgaaagaaaggaacaaatacaccaagattgttgacccagttcg 18552951  T
Q  170 gtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaagaaat 250  Q
    |||||| |||||||| | |||||  ||||||||| || |||||||||| |||| ||||  |||| | | ||||||||||||    
T  18552950 gtccaatatgacctaatctgggggagagagcagccctccaatccactatgatgaaagtgttacaaaagagttacaagaaat 18552870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 51 - 250
Target Start/End: Complemental strand, 40592972 - 40592769
Alignment:
Q  51 agcaacaacaacaaata--gacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag-aaagcaag-aatgaaataaactc 146  Q
    ||||||||||||||| |  |||||||||||||||||| | || |||||||||||||| |||||||||| ||||||| || | ||| || | || |||| |    
T  40592972 agcaacaacaacaaaaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaatatagataagcaatgaaagaaaaggaacaaacac 40592873  T
Q  147 gcctagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaag 246  Q
     || |||| | | |||||||||||||||| |||||||| | || ||  ||||| |||||| ||||| |||| |||| ||||  |||| | | ||||||||    
T  40592872 accaagattgttgacccagttcggtccaatatgacctaatctgtgggagagagaagctctccaatcgactatgatgaaagtgttacaaaagagttacaag 40592773  T
Q  247 aaat 250  Q
    ||||    
T  40592772 aaat 40592769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 220
Target Start/End: Complemental strand, 1417678 - 1417507
Alignment:
Q  51 agcaacaacaacaaat-agacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag-aaagcaagaatgaaataaactcgc 148  Q
    |||||||||||||||  | || |||||||||||||| |  | || ||||||||||| |||||||||||||||||| || | ||||  | || |||| | |    
T  1417678 agcaacaacaacaaaacatacataaatctaagtgtagagtaacatcacaagcataatcaaagcaataaagataagcaatgaaagagaggaacaaacacac 1417579  T
Q  149 ctagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaaga 220  Q
    | |||| | | |||||||||||||||| |||||||| | |||||  ||||||| | || |||||||||||||    
T  1417578 caagattgttgacccagttcggtccaatatgacctaatctgggggagagagcatccctccaatccactaaga 1417507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 250
Target Start/End: Complemental strand, 3716191 - 3715989
Alignment:
Q  51 agcaacaacaacaaata--gacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag-aaagcaagaatgaaataaactcg 147  Q
    ||||||||||||||| |  ||| |||||||||||||| | || |||||||||||||| || | ||||||||||||| || | ||||  | || |||| |     
T  3716191 agcaacaacaacaaaaacagacataaatctaagtgtagagcaacaccacaagcataatcacaacaataaagataagcaatgaaagagaggaacaaacaca 3716092  T
Q  148 cctagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaaga 247  Q
    || |||| | | |||||||||||||||| |||||||| | | ||   |||||||||||| ||||| |||| |||| ||||  |||| | | |||||||||    
T  3716091 ccaagattgttgacccagttcggtccaatatgacctaatctaggagagagagcagctctccaatctactatgatgaaagtgttacaaaagagttacaaga 3715992  T
Q  248 aat 250  Q
    |||    
T  3715991 aat 3715989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 227
Target Start/End: Complemental strand, 8370676 - 8370496
Alignment:
Q  51 agcaacaacaacaaata--gacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataagaaa-gcaagaatgaaataaactcg 147  Q
    ||||||||||||||| |  |||||| ||||||||||| | || |||||||||||||| |||||||  ||||||||| || | ||||| | || |||| |     
T  8370676 agcaacaacaacaaaaacagacctagatctaagtgtagagcaacaccacaagcataatcaaagcac-aaagataagcaatgaaagaaaggaacaaacaca 8370578  T
Q  148 ccta--gatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagt 227  Q
    || |  ||| | | |||||||||||||||| |||||||| | |||||  |||||||||||| |||||||||| |||| ||||    
T  8370577 ccaaaagattgttgacccagttcggtccaatatgacctaatctgggggagagagcagctctccaatccactatgatgaaagt 8370496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 250
Target Start/End: Original strand, 48438112 - 48438314
Alignment:
Q  51 agcaacaacaacaaata--gacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagat-aagaaagcaagaatgaaataaactcg 147  Q
    ||||||||||||||| |  |||||| ||||||||||| | || |||||||||||||| |||| |||||||||| || || |  |||| | || |||| |     
T  48438112 agcaacaacaacaaaaacagacctagatctaagtgtagagcaacaccacaagcataatcaaaacaataaagataaacaatgacagaaaggaacaaacaca 48438211  T
Q  148 cctagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaaga 247  Q
    || ||||   | ||| |||||||||||| |||||||| | |||||  ||||||||| || |||||||||| |||| ||||  |||| | | |||||||||    
T  48438212 ccaagattattgacctagttcggtccaatatgacctaatctgggggagagagcagccctccaatccactatgatgaaagtgttacaaaagagttacaaga 48438311  T
Q  248 aat 250  Q
    |||    
T  48438312 aat 48438314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 250
Target Start/End: Original strand, 37466214 - 37466390
Alignment:
Q  74 aatctaagtgtataacagcaccacaagcataaacaaagcaataaagataagaaa-gcaagaatgaaataaactcgcctagatcggtaacccagttcggtc 172  Q
    |||||||||||| | || ||  |||||||||| |||||||||||||||||| || | |||||   || |||| | || |||| | | || ||||||||||    
T  37466214 aatctaagtgtagagcaacattacaagcataatcaaagcaataaagataagcaatgaaagaaatgaacaaacacaccaagattgttgacacagttcggtc 37466313  T
Q  173 caaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaagaaat 250  Q
    ||| |||||||| | |||||  ||||| ||| || ||||||||||||||| ||||  |||| ||| ||||||||||||    
T  37466314 caatatgacctaatctgggggagagagtagccctccaatccactaagatgaaagtgttaca-atgagttacaagaaat 37466390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 118
Target Start/End: Original strand, 1417164 - 1417232
Alignment:
Q  51 agcaacaacaacaaat-agacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaa 118  Q
    |||||||||||||||  ||||||||||||||||||| |  |||| ||||||||||| ||||||||||||    
T  1417164 agcaacaacaacaaaacagacctaaatctaagtgtagagtagcatcacaagcataatcaaagcaataaa 1417232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 124
Target Start/End: Original strand, 40844550 - 40844625
Alignment:
Q  51 agcaacaacaacaaataga--cctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag 124  Q
    ||||||||||||||| | |  |||||||||||||||| | || ||| |||||||||| ||||||||||||||||||    
T  40844550 agcaacaacaacaaaaacaaacctaaatctaagtgtagagcaacactacaagcataatcaaagcaataaagataag 40844625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 250
Target Start/End: Complemental strand, 1736447 - 1736292
Alignment:
Q  96 acaagcataaacaaagcaataaagataagaaa-gcaagaatgaaataaactcgcctagatcggtaacccagttcggtccaaaatgacctactttggggat 194  Q
    |||||||||| |||||||||||| ||||| || | ||||| | || |||| | || | || | | |||||||||||||||| |||||||| | |||||      
T  1736447 acaagcataatcaaagcaataaacataagcaatgaaagaaaggaacaaacacaccaatattgttgacccagttcggtccaatatgacctaatctggggga 1736348  T
Q  195 gagagcagctcttcaatccactaagatggaagtaatacacatgggttacaagaaat 250  Q
    ||||||||| || |||||||||| |||| ||||  |||| | | ||||||||||||    
T  1736347 gagagcagccctccaatccactatgatgaaagtgttacaaaagagttacaagaaat 1736292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 27975029 - 27974962
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagt 227  Q
    |||||||||||||||| |||||||| | |||||  |||||||||||| |||||||||| |||| ||||    
T  27975029 acccagttcggtccaatatgacctaatctgggggagagagcagctctccaatccactatgatgaaagt 27974962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 21156287 - 21156407
Alignment:
Q  5 gaagcaaaggaagtagtaatcaatgagtcaagtagcctcaagtagcagcaacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcata 104  Q
    |||||||| ||||||||||||||||||| |||||| || |   |||| ||| || |||||| | ||||| ||||||| ||  |||| ||||| ||| |||    
T  21156287 gaagcaaatgaagtagtaatcaatgagtaaagtagtctta---agcaacaaaaataacaaacaaacctagatctaagagtgaaacaacaccataagaata 21156383  T
Q  105 aacaaagcaataaagataagaaag 128  Q
      |||||||| |||||||||||||    
T  21156384 ttcaaagcaacaaagataagaaag 21156407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 249
Target Start/End: Original strand, 32143335 - 32143419
Alignment:
Q  164 agttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaagaaa 249  Q
    |||||||||||| |||||||| | |||||  |||||||||||| |||||||||| |||| ||||  |||| | |||||||||||||    
T  32143335 agttcggtccaatatgacctaatctgggggagagagcagctctccaatccactatgatgaaagtgttaca-aagggttacaagaaa 32143419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 227
Target Start/End: Complemental strand, 33386741 - 33386676
Alignment:
Q  162 ccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagt 227  Q
    |||||||||||||| |||||||| | |||||  |||||||||||| |||||||||| |||| ||||    
T  33386741 ccagttcggtccaatatgacctaatctgggggagagagcagctctccaatccactatgatgaaagt 33386676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 227
Target Start/End: Original strand, 21711172 - 21711300
Alignment:
Q  100 gcataaacaaagcaataaagataagaaa-gcaagaatgaaataaactcgcctagatcggtaacccagttcggtccaaaatgacctactttggggatgaga 198  Q
    |||||| |||||||||| ||||||| || | ||||| | || |||| | || |||| | | |||||||||||||||| |||||||| | |||||  ||||    
T  21711172 gcataatcaaagcaatagagataagcaatgaaagaaaggaacaaacacaccaagattgttgacccagttcggtccaatatgacctaatctgggggagaga 21711271  T
Q  199 gcagctcttcaatccactaagatggaagt 227  Q
    ||||||||  ||||||||| |||| ||||    
T  21711272 gcagctctcaaatccactatgatgaaagt 21711300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 124
Target Start/End: Original strand, 8126619 - 8126674
Alignment:
Q  69 acctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag 124  Q
    ||||||||||||||||| | || |||||||  ||||| ||||||||||||||||||    
T  8126619 acctaaatctaagtgtagagcaacaccacactcataatcaaagcaataaagataag 8126674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 16264364 - 16264427
Alignment:
Q  164 agttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagt 227  Q
    |||||||||||| |||||||| | |||||  |||||||||||| |||||||||| |||| ||||    
T  16264364 agttcggtccaatatgacctaatctgggggagagagcagctctccaatccactatgatgaaagt 16264427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 21353607 - 21353662
Alignment:
Q  195 gagagcagctcttcaatccactaagatggaagtaatacacatgggttacaagaaat 250  Q
    ||||||| |||| ||||||||||||||| |||| ||||| ||| ||||||||||||    
T  21353607 gagagcacctctccaatccactaagatgaaagtgatacaaatgagttacaagaaat 21353662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 25795795 - 25795858
Alignment:
Q  164 agttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagt 227  Q
    |||||||||||| |||||||| | |||||  |||||||||||| ||||| ||||||||| ||||    
T  25795795 agttcggtccaatatgacctaatctgggggagagagcagctctccaatctactaagatgaaagt 25795858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 249
Target Start/End: Original strand, 27452970 - 27453056
Alignment:
Q  162 ccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaagaaa 249  Q
    |||||||||||||| |||||||| |  ||||  |||||||||||| |||||||||| |||| ||||  |||| | |||||||||||||    
T  27452970 ccagttcggtccaatatgacctaatccgggggagagagcagctctccaatccactatgatgaaagtgttaca-aagggttacaagaaa 27453056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 30709867 - 30709805
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatg 222  Q
    |||||||||||||||| |||||||| | |||||  ||||||||| || |||||||||| ||||    
T  30709867 acccagttcggtccaatatgacctaatctgggggagagagcagccctccaatccactatgatg 30709805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 250
Target Start/End: Original strand, 36029103 - 36029193
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaagaaat 250  Q
    ||||||||| |||||| |||||||| | |||||  || ||||||||| |||||||||| |||| ||||  |||| | | ||||||||||||    
T  36029103 acccagttctgtccaatatgacctaatctgggggagaaagcagctctccaatccactatgatgaaagtgttacaaaagagttacaagaaat 36029193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 29100169 - 29100226
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccacta 217  Q
    ||||||||||||||||||| ||| ||| | |||| |||||||||||| || |||||||    
T  29100169 acccagttcggtccaaaattacccactatagggaagagagcagctctccattccacta 29100226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 38210623 - 38210566
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccacta 217  Q
    ||||||||||||||||  ||||||| | |||||  |||||||||||| ||||||||||    
T  38210623 acccagttcggtccaatctgacctagtatgggggagagagcagctctccaatccacta 38210566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 48 - 227
Target Start/End: Complemental strand, 47704136 - 47703956
Alignment:
Q  48 agcagcaacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag-aaagcaagaatgaaataaactc 146  Q
    |||||||||||||| ||||||||||||||||||||||| | || |||||||||  ||| |||||||||||||||||| || | ||||| | || |||| |    
T  47704136 agcagcaacaacaaaaaatagacctaaatctaagtgtagagcaacaccacaagtttaatcaaagcaataaagataagcaatgaaagaaaggaaaaaacac 47704037  T
Q  147 gcctagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagt 227  Q
     || |||| | | |||||||||||||||| |||||||| | |||||  |||||||||||| |||||||||| |||| ||||    
T  47704036 accaagattgttgacccagttcggtccaatatgacctaatctgggggagagagcagctctccaatccactatgatgaaagt 47703956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 51 - 250
Target Start/End: Complemental strand, 9024029 - 9023836
Alignment:
Q  51 agcaacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataagaaagcaagaatg-aaataaactcgcc 149  Q
    ||||| ||||||||| | ||||||||||||||||||| || |||||||||||||| ||| |||||||||||||||||||||||| | ||| ||||         
T  9024029 agcaataacaacaaacatacctaaatctaagtgtatagcaacaccacaagcataatcaatgcaataaagataagaaagcaagaaagaaaacaaac----- 9023935  T
Q  150 tagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaagaaa 249  Q
     | || ||||||| |||||| ||||| |||||||| | ||||||  | || |||||| ||||||||||||||| |||| ||||| ||||| ||||| |||    
T  9023934 -acat-ggtaacctagttcgctccaatatgacctattatggggaatatagtagctctccaatccactaagatgaaagtgatacaaatgggatacaataaa 9023837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 48 - 250
Target Start/End: Original strand, 19072824 - 19073028
Alignment:
Q  48 agcagcaacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataagaaa-gcaagaatgaaataaactc 146  Q
    |||| ||||||||| ||  ||||||||||||||||||| | || |||||||||||||| |||| ||||||||||||| || | ||||| | || |||| |    
T  19072824 agcaacaacaacaaaaatcagacctaaatctaagtgtagagcaacaccacaagcataatcaaaacaataaagataagcaatgaaagaaaggaacaaacac 19072923  T
Q  147 gccta-gatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaa 245  Q
     || | ||| | | |||||||||||||||| |||||||| | |||||  |||||||||||| ||||||||||||||| ||||  |||| | | |||||||    
T  19072924 accaaagattgttgacccagttcggtccaatatgacctaatctgggggagagagcagctctccaatccactaagatgaaagtgttacaaaagagttacaa 19073023  T
Q  246 gaaat 250  Q
    |||||    
T  19073024 gaaat 19073028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 48 - 250
Target Start/End: Original strand, 19120714 - 19120918
Alignment:
Q  48 agcagcaacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataagaaa-gcaagaatgaaataaactc 146  Q
    |||| ||||||||| ||  ||||||||||||||||||| | || |||||||||||||| |||| ||||||||||||| || | ||||| | || |||| |    
T  19120714 agcaacaacaacaaaaatcagacctaaatctaagtgtagagcaacaccacaagcataatcaaaacaataaagataagcaatgaaagaaaggaacaaacac 19120813  T
Q  147 gccta-gatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaa 245  Q
     || | ||| | | |||||||||||||||| |||||||| | |||||  |||||||||||| ||||||||||||||| ||||  |||| | | |||||||    
T  19120814 accaaagattgttgacccagttcggtccaatatgacctaatctgggggagagagcagctctccaatccactaagatgaaagtgttacaaaagagttacaa 19120913  T
Q  246 gaaat 250  Q
    |||||    
T  19120914 gaaat 19120918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 54 - 250
Target Start/End: Complemental strand, 47099019 - 47098822
Alignment:
Q  54 aacaacaacaaat-agacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataagaaagc-aagaatgaaataaactcgccta 151  Q
    ||||||||||||  ||||||||||||||||||| | || ||||||||| |||| |||||||||||||||||| || | ||||| | || |||| | || |    
T  47099019 aacaacaacaaaacagacctaaatctaagtgtagagcaacaccacaagtataatcaaagcaataaagataagcaatcaaagaaaggaacaaacacaccaa 47098920  T
Q  152 gatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaagaaat 250  Q
    ||| | | |||||||||||||||| |||||| | | |||||  ||||||||| || ||||||||||||||| ||||  |||| ||| ||||||||||||    
T  47098919 gattgttgacccagttcggtccaatatgaccgaatctgggggagagagcagccctccaatccactaagatgaaagtgttaca-atgagttacaagaaat 47098822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 51 - 227
Target Start/End: Original strand, 775570 - 775749
Alignment:
Q  51 agcaacaacaacaaata--gacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag-aaagcaagaatgaaataaactcg 147  Q
    ||||||||||||||| |  |||||||||||||||||| | || |||||||||||||| |||||||||||||||||| || | ||||| | || |||| |     
T  775570 agcaacaacaacaaaaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagcaatgaaagaaaggaacaaacaca 775669  T
Q  148 cctagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagt 227  Q
     | |||| | | ||||| |||||||||| |||||||| | |||||  ||||| |||||| ||||||||||||||| ||||    
T  775670 tcaagattgttgacccaattcggtccaatatgacctaatctgggggagagagtagctctccaatccactaagatgaaagt 775749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 53 - 227
Target Start/End: Original strand, 13598301 - 13598475
Alignment:
Q  53 caacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag-aaagcaagaatgaaataaactcgccta 151  Q
    ||||||||| ||| ||||||| ||||||||||| |  | |||||||||||||| |||||||||||||||||| || | ||||| | || |||| | || |    
T  13598301 caacaacaa-aaacagacctagatctaagtgtagagaaacaccacaagcataatcaaagcaataaagataagcaatgaaagaaaggaacaaacacaccaa 13598399  T
Q  152 gatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagt 227  Q
    ||| | | |||||||||||||||| |||||||| | |||||  ||||||||| ||||||||||||| |||| ||||    
T  13598400 gattgttgacccagttcggtccaatatgacctaatctgggggagagagcagcccttcaatccactatgatgaaagt 13598475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 51 - 250
Target Start/End: Complemental strand, 27104567 - 27104369
Alignment:
Q  51 agcaacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag-aaagcaagaatgaaataaactcgcc 149  Q
    |||||||||||  || ||||||||||||||||||| | || |||||||||||||| |||||||||||||||||| || | || || | || |||| | ||    
T  27104567 agcaacaacaa--aacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagcaatgaaataaaggaacaaacacacc 27104470  T
Q  150 tagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaagaaa 249  Q
     |||| | | || ||||||||||||| || ||||| | |||||  |||||||||||| |||||||||| |||| ||||  |||| | | |||||||||||    
T  27104469 aagattgttgacacagttcggtccaatataacctaatctgggggagagagcagctctccaatccactatgatgaaagtgttacaaaagagttacaagaaa 27104370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 53 - 227
Target Start/End: Original strand, 29651713 - 29651888
Alignment:
Q  53 caacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag-aaagcaagaatgaaataaactcgccta 151  Q
    ||||||||| ||| |||| || ||||||||||| | || |||||||||||||| |||||||||||||||||| || | ||||| | || |||| | || |    
T  29651713 caacaacaaaaaacagacttagatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagcaatgaaagaaaggaacaaacacaccaa 29651812  T
Q  152 gatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagt 227  Q
    |||   | |||||||||||||||| |||||||| | |||||  ||||||||| || |||||||||| |||| ||||    
T  29651813 gatttttgacccagttcggtccaatatgacctaatctgggggagagagcagcactccaatccactatgatgaaagt 29651888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 51 - 222
Target Start/End: Complemental strand, 47103039 - 47102866
Alignment:
Q  51 agcaacaacaacaaat-agacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataagaaagc-aagaatgaaataaactcgc 148  Q
    |||||||||||||||  ||||||||||||||||||| | || ||||||||| |||| |||||||||||||||||| || | ||||| | || |||| | |    
T  47103039 agcaacaacaacaaaacagacctaaatctaagtgtagagcaacaccacaagtataatcaaagcaataaagataagcaatcaaagaaaggaacaaacacac 47102940  T
Q  149 ctagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatg 222  Q
    | | || | | |||||||||||||||| |||||||| | | |||  |||||||||  | |||||||||||||||    
T  47102939 caaaattgttgacccagttcggtccaatatgacctaatctaggggagagagcagccatccaatccactaagatg 47102866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 53 - 250
Target Start/End: Original strand, 22819331 - 22819529
Alignment:
Q  53 caacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataagaaagcaagaatg-aaataaactcgc-ct 150  Q
    ||||||||||||| || | |||| |||| |||| |||| |||||||||||||| |||| |||  |||||||||||||||||| | ||| |||| | | |     
T  22819331 caacaacaacaaacagtcttaaaactaaatgtaaaacatcaccacaagcataatcaaatcaa-caagataagaaagcaagaaagaaaacaaacacacaca 22819429  T
Q  151 agatcggtaacccagttcggtccaaaatgacctact-ttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaagaaa 249  Q
    |||| ||||||||| || ||||||| |||||||||| | ||||  ||||| ||| || |||||||| |||||| |||| ||||| ||| |||||||||||    
T  22819430 agat-ggtaacccaatttggtccaatatgacctactctggggggagagagtagccctccaatccaccaagatgaaagtgatacaaatgagttacaagaaa 22819528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 48 - 124
Target Start/End: Complemental strand, 40816932 - 40816856
Alignment:
Q  48 agcagcaacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag 124  Q
    |||| ||||||||| ||| ||||||||||||||||||| | || |||||| ||||||| ||||||||||||||||||    
T  40816932 agcaacaacaacaaaaaacagacctaaatctaagtgtagagcaacaccacgagcataatcaaagcaataaagataag 40816856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 249
Target Start/End: Original strand, 32889337 - 32889537
Alignment:
Q  51 agcaacaacaacaaat-agacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataagaaa--gcaagaatgaaataaactcg 147  Q
    ||||| |||||||||  ||| ||||||||||||||| | || ||||||||| |||| |||||||||||||||||| ||    ||||  | || |||| |     
T  32889337 agcaataacaacaaaacagatctaaatctaagtgtagagcaacaccacaagtataaccaaagcaataaagataagcaatgaaaagagaggaacaaacaca 32889436  T
Q  148 cctagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaaga 247  Q
    || |||| | | | | |||||||||||| |||||||| | |||||   ||||||||||| ||||||||||||||| ||||  |||| ||| |||||||||    
T  32889437 ccaagattgttgatctagttcggtccaatatgacctagtctgggggatagagcagctctccaatccactaagatgaaagtgttaca-atgagttacaaga 32889535  T
Q  248 aa 249  Q
    ||    
T  32889536 aa 32889537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 250
Target Start/End: Original strand, 9476161 - 9476361
Alignment:
Q  51 agcaacaacaacaaat-agacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataagaaa-gcaagaatgaaataaactcgc 148  Q
    |||||||| ||||||  |||| ||||| |||||||| || | || ||||||||||| |||||||| ||||||||  || | ||||| | || |||| | |    
T  9476161 agcaacaataacaaaacagacataaatataagtgtagaaaa-catcacaagcataatcaaagcaaaaaagataaacaatgaaagaaaggaacaaacacac 9476259  T
Q  149 ctagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaagaa 248  Q
    | |||| | | |||||||||||||||| |||||||| | | |||  |||||||||||| |||||||||| |||| ||||| |||| | | |||| |||||    
T  9476260 caagattgttgacccagttcggtccaatatgacctaatctaggggagagagcagctctccaatccactatgatgaaagtattacaaaagagttataagaa 9476359  T
Q  249 at 250  Q
    ||    
T  9476360 at 9476361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 250
Target Start/End: Complemental strand, 16124716 - 16124513
Alignment:
Q  51 agcaacaacaacaaata--gacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag-aaagcaag-aatgaaataaactc 146  Q
    ||||||||||||||| |  |||||| |||||| |||| | || |||||||| ||||| ||||||||||||||||||  | | ||| || | || |||| |    
T  16124716 agcaacaacaacaaaaacagacctagatctaaatgtagagcaacaccacaaacataatcaaagcaataaagataagctatgaaagaaaaggaacaaacac 16124617  T
Q  147 gcctagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaag 246  Q
     || |||| | | || ||||||||||||| |||||||| | |||||  ||||||||| || |||||||||| |||| ||||  |||| | | ||||||||    
T  16124616 accaagattgttgactcagttcggtccaatatgacctaatctgggggagagagcagccctccaatccactatgatgaaagtgttacaaaagagttacaag 16124517  T
Q  247 aaat 250  Q
    ||||    
T  16124516 aaat 16124513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 124
Target Start/End: Complemental strand, 17345756 - 17345643
Alignment:
Q  7 agcaaaggaagtagtaatcaatgagt-caagtagcctcaagtagcagcaacaacaacaaa-tagacctaaatctaagtgtataacagcaccacaagcata 104  Q
    ||||||||||||||||||||||||||  |||||||||||      ||||||||||||||| ||  |||||  || |||||| |||| ||||| |||||||    
T  17345756 agcaaaggaagtagtaatcaatgagtaaaagtagcctca------agcaacaacaacaaagtaatcctaagacttagtgtagaacaacaccataagcata 17345663  T
Q  105 aacaaagcaataaagataag 124  Q
    | |||||| |||||||||||    
T  17345662 atcaaagccataaagataag 17345643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 17345607 - 17345544
Alignment:
Q  158 taacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatg 222  Q
    ||||||||||||||| || |||||||||| ||||||  |||| |||||| |||||||||||||||    
T  17345607 taacccagttcggtctaatatgacctactctgggga-aagaggagctctccaatccactaagatg 17345544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 120
Target Start/End: Complemental strand, 50521299 - 50521231
Alignment:
Q  53 caacaacaacaaa-tagacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaaga 120  Q
    ||||||||||||| ||||||||| ||  |||||| |||| |||||||| ||||| ||||||||||||||    
T  50521299 caacaacaacaaaatagacctaagtcctagtgtagaacaacaccacaaacataatcaaagcaataaaga 50521231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 215
Target Start/End: Original strand, 3281718 - 3281773
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccac 215  Q
    |||||||||||||||| |||||||| | |||||  |||||||||||| ||||||||    
T  3281718 acccagttcggtccaatatgacctaatctgggggagagagcagctctccaatccac 3281773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 26644984 - 26644917
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagt 227  Q
    |||||||||||||||| |||||||| | |||||  |||||||||||| ||||||| || |||| ||||    
T  26644984 acccagttcggtccaatatgacctaatctgggggagagagcagctctccaatccattatgatgaaagt 26644917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 21536656 - 21536599
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccacta 217  Q
    ||||||||||||  ||||||||||| | |||||  |||||||||||| ||||||||||    
T  21536656 acccagttcggtaaaaaatgacctaatctgggggagagagcagctctccaatccacta 21536599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 51752636 - 51752579
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccacta 217  Q
    ||||||||||||||||| ||||||| | |||||  ||||||||| || ||||||||||    
T  51752636 acccagttcggtccaaattgacctagtctgggggagagagcagccctccaatccacta 51752579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 53 - 222
Target Start/End: Original strand, 24333714 - 24333881
Alignment:
Q  53 caacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataagaaa-gcaagaatgaaataaactcgccta 151  Q
    ||||||||| ||| ||||||| ||||||||||| |   ||| ||||||||||| |||||||||||||||||| || | ||||| |||| |||| | || |    
T  24333714 caacaacaaaaaacagacctagatctaagtgtaga---gcaacacaagcataatcaaagcaataaagataagcaatgaaagaaagaaacaaacacaccaa 24333810  T
Q  152 gatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatg 222  Q
    ||| | |||| ||||||||||||| |||||||| |||||||  |||||||||||| |||||||||| ||||    
T  24333811 gattgttaactcagttcggtccaatatgacctaatttgggggagagagcagctctccaatccactatgatg 24333881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 51 - 227
Target Start/End: Complemental strand, 25862221 - 25862042
Alignment:
Q  51 agcaacaacaacaaata--gacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag-aaagcaagaatgaaataaactcg 147  Q
    ||||||||||||||| |  |||||||||||||||||| | || |||||||||||||| |||||||||||||||||| || | ||||| | ||||||| |     
T  25862221 agcaacaacaacaaaaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagcaatgaaagaaaggaataaacaca 25862122  T
Q  148 cctagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagt 227  Q
    || |||| | | || ||||||||||||| |||||||| | |||||| |||||| || || |||||||||| |||| ||||    
T  25862121 ccaagattgttgactcagttcggtccaatatgacctaatatggggaagagagcggccctccaatccactatgatgaaagt 25862042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 48 - 250
Target Start/End: Complemental strand, 1983498 - 1983297
Alignment:
Q  48 agcagcaacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataagaaagcaagaatgaaat-aaactc 146  Q
    |||| |||||||||||||  ||| |||||||||||||| | || |||||||| ||||| |||| ||| ||  ||||||||||||||| ||||  |||| |    
T  1983498 agcaacaacaacaacaaactgacttaaatctaagtgtaaagcatcaccacaaacataatcaaaacaacaat-ataagaaagcaagaaagaaaacaaacac 1983400  T
Q  147 gcctagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaag 246  Q
     || | || |||||||||||||||||||| |||||||||| |||||  || ||||||||| |||||||||| |||  |||| ||||| | ||||||||||    
T  1983399 accaatat-ggtaacccagttcggtccaatatgacctactatgggggagatagcagctctccaatccactaggatcaaagtgatacaaaggggttacaag 1983301  T
Q  247 aaat 250  Q
    ||||    
T  1983300 aaat 1983297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 156 - 250
Target Start/End: Original strand, 5112243 - 5112337
Alignment:
Q  156 ggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaagaaat 250  Q
    |||||||||||||||||||| |||| ||||||||||| ||||||||||||| ||||||||||| ||| ||||  |||| ||||||||||||||||    
T  5112243 ggtaacccagttcggtccaatatgatctactttgggggtgagagcagctctccaatccactaatatgaaagtgttacaaatgggttacaagaaat 5112337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 53 - 250
Target Start/End: Original strand, 39245896 - 39246094
Alignment:
Q  53 caacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag-aaagcaagaatgaaataaactcgccta 151  Q
    ||||||||| ||| ||||||||||||||||||| | || ||||||| |||||| |||| ||||||||||||| || | ||||| | || |||| | || |    
T  39245896 caacaacaaaaaacagacctaaatctaagtgtagagcaacaccacaggcataatcaaaacaataaagataagcaatgaaagaaaggaacaaacacaccaa 39245995  T
Q  152 gatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaagaaat 250  Q
    ||| | | |||||||||||||||| |||||||| | |||||  ||||||||| || |||||||||| |||| ||||  |||| | | ||||||||||||    
T  39245996 gattgttgacccagttcggtccaatatgacctaatctgggggagagagcagccctccaatccactatgatgaaagtgttacaaaagagttacaagaaat 39246094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 48 - 248
Target Start/End: Complemental strand, 34496022 - 34495822
Alignment:
Q  48 agcagcaacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataagaaa-gcaagaatgaaat-aaact 145  Q
    |||| ||||||||||||| || || ||| ||||||||| | || || ||||||||||| |||||||||||| | ||| || | ||||| ||||  ||||     
T  34496022 agcaacaacaacaacaaacagtcccaaaactaagtgtaaagcatcaacacaagcataatcaaagcaataaa-acaagcaatgaaagaaagaaaacaaaca 34495924  T
Q  146 cgcctagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaa 245  Q
    | || |||| ||||||| |||||||||||| ||||| |||| |||||  ||||||||| || ||||||||||||||| |||| ||||| |||||||||||    
T  34495923 caccaagat-ggtaacctagttcggtccaacatgacttactctgggggagagagcagccctccaatccactaagatgaaagtgatacaaatgggttacaa 34495825  T
Q  246 gaa 248  Q
    |||    
T  34495824 gaa 34495822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 54 - 250
Target Start/End: Original strand, 10047283 - 10047479
Alignment:
Q  54 aacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagat-aagaaagcaagaatgaaataaactcgcctag 152  Q
    |||||||| |||||||| || ||||||||||| | || |||||||||||||| ||||||||||||||| || || | ||||| | || |||| | || ||    
T  10047283 aacaacaa-aaatagacatagatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataaacaatgaaagaaaggaacaaacacaccaag 10047381  T
Q  153 atcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaagaaat 250  Q
    || | | |||||||||||||||| |||||||| | |||||  ||||||||| || |||||||||| |||| ||||  |||| | | ||||||||||||    
T  10047382 attgttgacccagttcggtccaatatgacctaatctgggggagagagcagccctccaatccactatgatgaaagtgttacaaaagagttacaagaaat 10047479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 5269431 - 5269211
Alignment:
Q  7 agcaaaggaagtagtaatcaatgagtcaagtagcctcaagtagcagcaacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaa 106  Q
    |||||||||||| ||||||||||  | ||||  |  |||| | || ||||||||| ||||| ||||| ||||||||||| | || ||||||||||||||     
T  5269431 agcaaaggaagtggtaatcaatggataaagtgtctccaagcaacaacaacaacaa-aaatatacctagatctaagtgtagagcaacaccacaagcataat 5269333  T
Q  107 caaagcaataaagataagaaa-gcaagaatgaaataaactcgcctagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctc 205  Q
    |||||||||||| |||||||| | ||||| | || |||| |  | |||| | | ||| |||||||||||| |||||||| | |||||  ||||||||| |    
T  5269332 caaagcaataaatataagaaatgaaagaaaggaacaaacacaacaagattgttgacctagttcggtccaatatgacctaatctgggggagagagcagccc 5269233  T
Q  206 ttcaatccactaagatggaagt 227  Q
    | |||||||||| |||| ||||    
T  5269232 tccaatccactatgatgaaagt 5269211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 156 - 250
Target Start/End: Complemental strand, 39774396 - 39774302
Alignment:
Q  156 ggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaagaaat 250  Q
    |||||| ||||||||||||| |||||||||| |||||   ||||||||||| ||||||||||| ||| |||| ||||| || |||||||||||||    
T  39774396 ggtaactcagttcggtccaatatgacctactctgggggatagagcagctctccaatccactaaaatgaaagtgatacaaataggttacaagaaat 39774302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 75 - 222
Target Start/End: Original strand, 54867108 - 54867255
Alignment:
Q  75 atctaagtgtataacagcaccacaagcataaacaaagcaataaagataagaaa-gcaagaatgaaataaactcgcctagatcggtaacccagttcggtcc 173  Q
    ||||||||||| | || |||||||||||||| ||||| |||||||||||| || | ||||| | || |||| | || |||| | | ||||||||||||||    
T  54867108 atctaagtgtagagcaacaccacaagcataatcaaagtaataaagataagcaatgaaagaaaggaacaaacacaccaagattgttgacccagttcggtcc 54867207  T
Q  174 aaaatgacctactttggggatgagagcagctcttcaatccactaagatg 222  Q
    || |||||||| | |||||| ||||||||| |||||||| |||| ||||    
T  54867208 aatatgacctagtctgggga-gagagcagcccttcaatcaactatgatg 54867255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 227
Target Start/End: Original strand, 5143162 - 5143336
Alignment:
Q  53 caacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag-aaagcaagaatgaaataaactcgccta 151  Q
    ||||||||| ||| ||||||||||||||||||| |||| |||||||| ||||| |||| ||||| ||||||| || | ||||| | || |||| | |  |    
T  5143162 caacaacaa-aaacagacctaaatctaagtgtagaacaacaccacaaacataatcaaaacaatagagataagcaatgaaagaaaggaacaaacacactga 5143260  T
Q  152 gatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagt 227  Q
    ||| | | ||| |||||||||||| |||||||| | |||||  |||||||||||| ||| |||||| |||| ||||    
T  5143261 gattgttgacctagttcggtccaatatgacctaatctgggggagagagcagctctccaacccactatgatgaaagt 5143336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 67 - 217
Target Start/End: Complemental strand, 38152619 - 38152469
Alignment:
Q  67 agacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag-aaagcaagaatgaaataaactcgcctagatcggtaacccag 165  Q
    ||||||| ||||||||||||| || |||||||||||||| |||||| | ||||||||| || | ||||| | || |||| | || |||| | | ||||||    
T  38152619 agacctagatctaagtgtatagcaacaccacaagcataatcaaagc-acaaagataagcaatgaaagaaaggaacaaacacaccaagattgttgacccag 38152521  T
Q  166 ttcggtccaaaatgacctactttggggatgagagcagctcttcaatccacta 217  Q
    |||||||||| ||||| || | |||||  |||||||||||| ||||||||||    
T  38152520 ttcggtccaatatgacataatctgggggagagagcagctctccaatccacta 38152469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 67 - 227
Target Start/End: Original strand, 5147593 - 5147754
Alignment:
Q  67 agacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag-aaagcaagaatgaaataaactcgcctagatcggtaacccag 165  Q
    ||||||||||||||||||| | || |||||||| ||||| |||| ||||| ||||||| || | ||||| | || |||| | || |||| | | ||||||    
T  5147593 agacctaaatctaagtgtagagcaacaccacaaacataatcaaaacaatagagataagcaatgaaagaaaggaacaaacacaccgagattgttgacccag 5147692  T
Q  166 ttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagt 227  Q
    |||||||||| |||||||| |||||||  | |||||||||| || |||| || |||| ||||    
T  5147693 ttcggtccaatatgacctaatttgggggagggagcagctctccagtccattatgatgaaagt 5147754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 94 - 249
Target Start/End: Complemental strand, 31985787 - 31985633
Alignment:
Q  94 ccacaagcataaacaaagcaataaagataagaaagcaagaatgaaataaactcgccta--gatcggtaacccagttcggtccaaaatgacctactttggg 191  Q
    ||||||||||| ||||||||||||||||||| ||| ||| | |||  |||| | || |  ||| | | |||||||||||||||| |||||||| | ||||    
T  31985787 ccacaagcatatacaaagcaataaagataagcaagaaaggaagaac-aaacacaccaaaagattgttgacccagttcggtccaatatgacctaatctggg 31985689  T
Q  192 gatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaagaaa 249  Q
    || |||||||||||| |||||||||| |||| ||||  |||| | |||||||||||||    
T  31985688 ga-gagagcagctctccaatccactatgatgaaagtgttaca-aagggttacaagaaa 31985633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 37781765 - 37781839
Alignment:
Q  53 caacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataagaaa 127  Q
    ||||| ||||||||||||||| ||||||||||  | || |||||||||||||  |||||||| ||||||||||||    
T  37781765 caacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataagaaa 37781839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 48 - 124
Target Start/End: Complemental strand, 3796720 - 3796644
Alignment:
Q  48 agcagcaacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag 124  Q
    |||| ||||||||| ||  ||||||||||||||||||| |  | || ||||||||||| ||||||||||||||||||    
T  3796720 agcaacaacaacaaaaatcagacctaaatctaagtgtagagtaacatcacaagcataatcaaagcaataaagataag 3796644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 48 - 250
Target Start/End: Original strand, 18377269 - 18377459
Alignment:
Q  48 agcagcaacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataagaaagcaagaatgaaataaactcg 147  Q
    |||| ||||||||||||| || |||||| ||||||||| | ||  ||||||||||||| |||||||| ||| ||||||           ||| |||| |     
T  18377269 agcaacaacaacaacaaacagtcctaaaactaagtgtaaagcataaccacaagcataatcaaagcaacaaaaataaga-----------aaacaaacaca 18377357  T
Q  148 cctagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaaga 247  Q
    || |||| ||||||||||||| || | | |||||||||| ||| |  ||||||||| || || |||||||||||| |||| ||||| |||||||| ||||    
T  18377358 ccaagat-ggtaacccagttcagttctatatgacctactctggaggagagagcagccctccattccactaagatgaaagtgatacaaatgggttataaga 18377456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 36315316 - 36315249
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagt 227  Q
    |||||||||||||||| |||||||| | |||||  |||||||||||| |||||||||| |||| ||||    
T  36315316 acccagttcggtccaatatgacctaatctgggggagagagcagctctccaatccactatgatgaaagt 36315249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 36329525 - 36329458
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagt 227  Q
    |||||||||||||||| |||||||| | |||||  |||||||||||| |||||||||| |||| ||||    
T  36329525 acccagttcggtccaatatgacctaatctgggggagagagcagctctccaatccactatgatgaaagt 36329458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 227
Target Start/End: Original strand, 3777448 - 3777626
Alignment:
Q  51 agcaacaacaacaaata--gacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag-aaagcaagaatgaaataaactcg 147  Q
    ||||||||||||||| |  |||||| ||||||||||| ||||  ||||||||||||| |||||| | ||||||||| || | ||||| | || |||| |     
T  3777448 agcaacaacaacaaaaacagacctagatctaagtgtagaacaaaaccacaagcataatcaaagc-acaaagataagcaatgaaagaaaggaacaaacaca 3777546  T
Q  148 cctagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagt 227  Q
    || |||| | | |||||||||||||||| || ||||| | | | |  ||||| |||||| |||||||||| |||| ||||    
T  3777547 ccgagattgttgacccagttcggtccaatataacctaatctagaggagagagtagctctccaatccactatgatgaaagt 3777626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 124
Target Start/End: Complemental strand, 42599762 - 42599698
Alignment:
Q  60 aacaaatagacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag 124  Q
    |||||| | ||||| |||||| |||| | || |||||||||||||| ||||||||||||||||||    
T  42599762 aacaaacaaacctagatctaaatgtagagcaacaccacaagcataatcaaagcaataaagataag 42599698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 5396758 - 5396691
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagt 227  Q
    |||||||||||||||| |||||||| | ||| |  |||||||||||| |||||||||| |||| ||||    
T  5396758 acccagttcggtccaatatgacctaatctggaggagagagcagctctccaatccactatgatgaaagt 5396691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 250
Target Start/End: Complemental strand, 16623380 - 16623290
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaagaaat 250  Q
    |||||||||||| ||| |||||||| | ||| |  |||||||||||| |||||||||| |||| ||||  |||| | | ||||||||||||    
T  16623380 acccagttcggttcaatatgacctaatctggaggagagagcagctctccaatccactatgatgaaagtgttacaaaagagttacaagaaat 16623290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 6765171 - 6765114
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccacta 217  Q
    ||||||||||||||||| ||||||| | |||||  ||||||||| || ||||||||||    
T  6765171 acccagttcggtccaaattgacctagtctgggggagagagcagccctccaatccacta 6765114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 7941650 - 7941593
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccacta 217  Q
    ||||||||||||||||| ||||||| | |||||  ||||||||| || ||||||||||    
T  7941650 acccagttcggtccaaattgacctagtctgggggagagagcagccctccaatccacta 7941593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 18847479 - 18847423
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccacta 217  Q
    ||||||||||||||||| ||||||| | |||||| ||||||||| || ||||||||||    
T  18847479 acccagttcggtccaaattgacctagtctgggga-gagagcagccctccaatccacta 18847423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 22134624 - 22134680
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccacta 217  Q
    ||||||||||||||||| ||||||| | |||||| ||||||||| || ||||||||||    
T  22134624 acccagttcggtccaaattgacctagtctgggga-gagagcagccctccaatccacta 22134680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 124
Target Start/End: Complemental strand, 16630879 - 16630805
Alignment:
Q  48 agcagcaacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag 124  Q
    |||||||||||||| ||| | ||||| ||||||||||| | || |||||||||||||| ||||| || |||||||||    
T  16630879 agcagcaacaacaa-aaacaaacctagatctaagtgtaaagcaacaccacaagcataatcaaag-aacaaagataag 16630805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 51 - 227
Target Start/End: Complemental strand, 10077364 - 10077185
Alignment:
Q  51 agcaacaacaacaaata--gacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag-aaagcaagaatgaaataaactcg 147  Q
    ||||||||||||||| |  |||||||||||||||||| | || |||||||||||||| |||||||||||||||||| || | ||||| | || |||| |     
T  10077364 agcaacaacaacaaaaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagcaatgaaagaaaggaacaaacaca 10077265  T
Q  148 cctagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagt 227  Q
    || |||| | | ||||| |||||||||| |||||||| | |||||  ||||||||| || |||||||||| |||| ||||    
T  10077264 ccaagattgttgacccaattcggtccaatatgacctaatctgggggagagagcagccctccaatccactatgatgaaagt 10077185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 51 - 227
Target Start/End: Original strand, 31936486 - 31936664
Alignment:
Q  51 agcaacaacaacaaat-agacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag-aaagcaagaatgaaataaactcgc 148  Q
    |||||||||||||||  |||||| |||| ||||||| | || ||||||||||||||||||||||||||||||||| || | ||||  | || |||| | |    
T  31936486 agcaacaacaacaaaacagaccttaatcaaagtgtagagcaacaccacaagcataaacaaagcaataaagataagcaatgaaagataggaacaaacacac 31936585  T
Q  149 ctagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagt 227  Q
    | |||| | | ||| |||||||||||| |||||||| | ||||   |||||||||||| ||||||||||| ||| ||||    
T  31936586 caagattgttgacctagttcggtccaatatgacctagtctgggagagagagcagctctccaatccactaatatgaaagt 31936664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 31077190 - 31076938
Alignment:
Q  10 aaaggaagtagtaatcaatgagtcaagtagcctcaag---tagcagcaacaacaacaa--------atagacctaaatctaagtgtataacagcaccaca 98  Q
    ||||||| ||||||||||||||| |||||||||||||   || |||||||||||| ||        |||||| |||||||||||||| |||| || || |    
T  31077190 aaaggaaatagtaatcaatgagtaaagtagcctcaagcaataacagcaacaacaagaacaacaaaaatagacttaaatctaagtgtagaacaacatcata 31077091  T
Q  99 agcataaac-aaagcaataaagataagaaagcaagaatgaaataaactcgcctagatcggtaacccagttcggtccaaaatgacctactttggggatgag 197  Q
    ||||||| | ||||||| ||| |||||  || |||||||||| ||||   || |||| ||||||| ||||  |||||| |||||||||| |   |  ||     
T  31077090 agcataatcaaaagcaacaaatataagccagaaagaatgaaacaaacataccaagattggtaacctagtttagtccaatatgacctactctctaggagat 31076991  T
Q  198 agcagctcttcaatccactaagatggaagtaatacacatgggttacaagaaat 250  Q
    ||||||||| ||||||||||||||  |||| ||||| ||||||||||| ||||    
T  31076990 agcagctctccaatccactaagataaaagtgatacaaatgggttacaataaat 31076938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 51 - 227
Target Start/End: Original strand, 31979411 - 31979590
Alignment:
Q  51 agcaacaacaacaaata--gacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag-aaagcaagaatgaaataaactcg 147  Q
    ||||||||||||||| |  |||||||||||||||||| | || || ||||||||||| |||||||||||||||||| || | || |  | || |||| |     
T  31979411 agcaacaacaacaaaaacagacctaaatctaagtgtagagcaacatcacaagcataatcaaagcaataaagataagcaatgaaatagaggaacaaacaca 31979510  T
Q  148 cctagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagt 227  Q
    || |||| | | |||||||||||||||| ||||| || | |||||  ||||||||| || ||||||||||||||| ||||    
T  31979511 ccaagattgttgacccagttcggtccaatatgacataatctgggggagagagcagccctccaatccactaagatgaaagt 31979590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 250
Target Start/End: Original strand, 22963597 - 22963799
Alignment:
Q  48 agcagcaacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag-aaagcaagaatgaaataaactc 146  Q
    |||| ||||||||| ||| ||||||| ||||||||||| | || |||||||||||||| |||||||||| |||||||  | | ||||| | || |||| |    
T  22963597 agcaacaacaacaaaaaacagacctagatctaagtgtagagcaacaccacaagcataatcaaagcaatagagataagctatgaaagaaaggaacaaacac 22963696  T
Q  147 gcctagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaag 246  Q
     || |||| | | |||||||||||| ||| |||||| | | |||||| ||||||||| || |||||||||| |||| ||||  |||| | | ||||||||    
T  22963697 accaagattgttgacccagttcggtgcaatatgaccaaatctgggga-gagagcagccctccaatccactatgatgaaagtgttacaaaagagttacaag 22963795  T
Q  247 aaat 250  Q
    ||||    
T  22963796 aaat 22963799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 250
Target Start/End: Complemental strand, 23824796 - 23824594
Alignment:
Q  48 agcagcaacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag-aaagcaagaatgaaataaactc 146  Q
    |||| ||||||||| ||| ||||||| ||||||||||| | || |||||||||||||| |||||||||| |||||||  | | ||||| | || |||| |    
T  23824796 agcaacaacaacaaaaaacagacctagatctaagtgtagagcaacaccacaagcataatcaaagcaatagagataagctatgaaagaaaggaacaaacac 23824697  T
Q  147 gcctagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaag 246  Q
     || |||| | | |||||||||||| ||| |||||| | | |||||| ||||||||| || |||||||||| |||| ||||  |||| | | ||||||||    
T  23824696 accaagattgttgacccagttcggtgcaatatgaccaaatctgggga-gagagcagccctccaatccactatgatgaaagtgttacaaaagagttacaag 23824598  T
Q  247 aaat 250  Q
    ||||    
T  23824597 aaat 23824594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 222
Target Start/End: Complemental strand, 24436122 - 24435996
Alignment:
Q  96 acaagcataaacaaagcaataaagataagaaagcaagaatg-aaataaactcgcctagatcggtaacccagttcggtccaaaatgacctactttggggat 194  Q
    ||||||||||||||||||| ||||||||||||||||||| | ||| |||| | || |||| |||||||||||||| ||||| |||||||||| | |||      
T  24436122 acaagcataaacaaagcaacaaagataagaaagcaagaaagaaaacaaacacaccaagat-ggtaacccagttcgatccaatatgacctactctagggga 24436024  T
Q  195 gagagcagctcttcaatccactaagatg 222  Q
    ||||||||| || | |||||||| ||||    
T  24436023 gagagcagccctccgatccactaggatg 24435996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 67 - 227
Target Start/End: Original strand, 4629869 - 4630031
Alignment:
Q  67 agacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag-aaagcaagaatgaaataaactc-gcctagatcggtaaccca 164  Q
    ||||||||||||||||||| | || |||||||||||||| |||||||||||||||||| || | ||||| | || |||| |  |  |||| | | || ||    
T  4629869 agacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagcaatgaaagaaaggaacaaacacatcaaagattgttgactca 4629968  T
Q  165 gttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagt 227  Q
    |||| |||||| |||||||| | | |||| |||||||||||| ||||||||||||||| ||||    
T  4629969 gttcagtccaatatgacctaatctagggaagagagcagctctccaatccactaagatgaaagt 4630031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 124
Target Start/End: Complemental strand, 21801549 - 21801473
Alignment:
Q  48 agcagcaacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag 124  Q
    |||| ||||||||| ||  ||||||||||||||||||| ||||  ||||||| ||||| ||||||||||||||||||    
T  21801549 agcaacaacaacaaaaatcagacctaaatctaagtgtagaacaataccacaatcataatcaaagcaataaagataag 21801473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 124
Target Start/End: Original strand, 18232743 - 18232818
Alignment:
Q  51 agcaacaacaacaaataga--cctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag 124  Q
    ||||||||||||||| | |  |||| ||||||||||| | || |||||||||||||| ||||||||||||||||||    
T  18232743 agcaacaacaacaaaaacaaacctagatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataag 18232818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 5757565 - 5757498
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagt 227  Q
    |||||||||||||||| |||||||| | |||||  |||||||||||| |||||||||| |||| ||||    
T  5757565 acccagttcggtccaatatgacctaatctgggggagagagcagctctccaatccactatgatgaaagt 5757498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 30967509 - 30967452
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccacta 217  Q
    ||||||||||||||||| ||||||| |||||||  |||||||||||| | ||||||||    
T  30967509 acccagttcggtccaaattgacctagtttgggggagagagcagctctccgatccacta 30967452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 125
Target Start/End: Complemental strand, 33721792 - 33721682
Alignment:
Q  9 caaaggaagtagtaatcaatgagtcaagtagcctcaagtagcagcaacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaaca 108  Q
    ||||||||||||||||| |||||| ||||||  |||||      ||||||||||||| |  |||| ||||||||||  |||| |||||||| ||||  ||    
T  33721792 caaaggaagtagtaatcgatgagtaaagtagtttcaag------caacaacaacaaacatccctagatctaagtgtgaaacatcaccacaaacatattca 33721699  T
Q  109 aagcaataaagataaga 125  Q
    |||||| ||||||||||    
T  33721698 aagcaacaaagataaga 33721682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 21356046 - 21356113
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagt 227  Q
    |||||||||||||||| |||||||| | ||| |  |||||||||||| |||||||||| |||| ||||    
T  21356046 acccagttcggtccaatatgacctaatctggaggagagagcagctctccaatccactatgatgaaagt 21356113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 4816237 - 4816294
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccacta 217  Q
    ||||||||||||||||| ||||||| | |||||  ||||||||| || ||||||||||    
T  4816237 acccagttcggtccaaattgacctagtctgggggagagagcagccctccaatccacta 4816294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 5273222 - 5273279
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccacta 217  Q
    ||||||||||||||||| ||||||| | |||||  ||||||||| || ||||||||||    
T  5273222 acccagttcggtccaaattgacctagtctgggggagagagcagccctccaatccacta 5273279  T

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Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 19704573 - 19704630
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccacta 217  Q
    ||||||||||||||||| ||||||| | |||||  ||||||||| || ||||||||||    
T  19704573 acccagttcggtccaaattgacctagtctgggggagagagcagccctccaatccacta 19704630  T

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Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 20915362 - 20915419
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccacta 217  Q
    ||||||||||||||||| ||||||| | |||||  ||||||||| || ||||||||||    
T  20915362 acccagttcggtccaaattgacctagtctgggggagagagcagccctccaatccacta 20915419  T

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Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 250
Target Start/End: Complemental strand, 21801429 - 21801341
Alignment:
Q  162 ccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggttacaagaaat 250  Q
    ||||||| |||||| |||||||| | |||||  | |||||||||| ||||||||||||||  ||||  |||| | | ||||||||||||    
T  21801429 ccagttcagtccaatatgacctaatctgggggagcgagcagctctccaatccactaagataaaagtgttacaaaagagttacaagaaat 21801341  T

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Target: scaffold0006 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 53 - 227
Target Start/End: Original strand, 5586 - 5760
Alignment:
Q  53 caacaacaacaaatagacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag-aaagcaagaatgaaataaactcgccta 151  Q
    ||||||||| ||| ||||||| ||||||||||| |  | |||||||||||||| |||||||||||||||||| || | ||||| | || |||| | || |    
T  5586 caacaacaa-aaacagacctagatctaagtgtagagaaacaccacaagcataatcaaagcaataaagataagcaatgaaagaaaggaacaaacacaccaa 5684  T
Q  152 gatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagt 227  Q
    ||| | | |||||||||||||||| |||||||| | |||||  ||||||||| ||||||||||||| |||| ||||    
T  5685 gattgttgacccagttcggtccaatatgacctaatctgggggagagagcagcccttcaatccactatgatgaaagt 5760  T

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Target: scaffold0006; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 51 - 227
Target Start/End: Original strand, 2390 - 2569
Alignment:
Q  51 agcaacaacaacaaata--gacctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataag-aaagcaagaatgaaataaactcg 147  Q
    ||||||||||||||| |  |||||| ||||||||||| |||| |||||||||||||| |||||||||||||||||| || | ||||| | || |||| |     
T  2390 agcaacaacaacaaaaacagacctagatctaagtgtagaacaacaccacaagcataatcaaagcaataaagataagcaatgaaagaaaggaacaaacaca 2489  T
Q  148 cctagatcggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagt 227  Q
    || |||| | | |||||||||| ||||| |||||||| | |||||  || |||||| || |||||||||| |||| ||||    
T  2490 ccaagattgttgacccagttcgctccaatatgacctaatctgggggagacagcagccctccaatccactatgatgaaagt 2569  T

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Target: scaffold0140 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 8506 - 8439
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagt 227  Q
    |||||||||||||||| |||||||| | |||||  |||||||||||| |||||||||| |||| ||||    
T  8506 acccagttcggtccaatatgacctaatctgggggagagagcagctctccaatccactatgatgaaagt 8439  T

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Target: scaffold0176 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 127
Target Start/End: Original strand, 17181 - 17239
Alignment:
Q  69 acctaaatctaagtgtataacagcaccacaagcataaacaaagcaataaagataagaaa 127  Q
    |||||||||||||| || | || ||||||||||||||  ||||||||||||||||||||    
T  17181 acctaaatctaagtatagagcaacaccacaagcataattaaagcaataaagataagaaa 17239  T

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Target: scaffold0184 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 29729 - 29670
Alignment:
Q  5 gaagcaaaggaagtagtaatcaatgagtcaagtagcctcaagtagcagcaacaacaacaa 64  Q
    |||||||||||||| ||||||||||||| ||||| ||||||  | || ||||||||||||    
T  29729 gaagcaaaggaagtggtaatcaatgagtaaagtatcctcaaccaacaacaacaacaacaa 29670  T

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Target: scaffold0087 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 44048 - 43981
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagt 227  Q
    |||||||||||||||| |||| ||| | |||||  |||||||||||| |||||||||| |||| ||||    
T  44048 acccagttcggtccaatatgatctattctgggggagagagcagctctccaatccactatgatgaaagt 43981  T

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Target: scaffold0078 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 43115 - 43174
Alignment:
Q  5 gaagcaaaggaagtagtaatcaatgagtcaagtagcctcaagtagcagcaacaacaacaa 64  Q
    |||||||||||||| ||||||||||||| ||||| ||||||  | || ||||||||||||    
T  43115 gaagcaaaggaagtggtaatcaatgagtaaagtatcctcaaccaacaacaacaacaacaa 43174  T

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Target: scaffold0078; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 242
Target Start/End: Original strand, 23534 - 23620
Alignment:
Q  156 ggtaacccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccactaagatggaagtaatacacatgggtta 242  Q
    ||||||| |||||||||||| |||||||||||| |||  || || |||| | |||| |||||||||| |||| ||||| || |||||    
T  23534 ggtaacctagttcggtccaatatgacctactttaggggagaaagaagctatccaattcactaagatgaaagtgatacaaataggtta 23620  T

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Target: scaffold0154 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 11479 - 11536
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccacta 217  Q
    |||| |||||||||||| ||||||| | |||||  |||||||||||| ||||||||||    
T  11479 acccggttcggtccaaattgacctagtctgggggagagagcagctctccaatccacta 11536  T

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Target: scaffold0025 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 69298 - 69355
Alignment:
Q  160 acccagttcggtccaaaatgacctactttggggatgagagcagctcttcaatccacta 217  Q
    ||||||||||||||||| ||||||| | |||||  |||||||||||| | ||||||||    
T  69298 acccagttcggtccaaattgacctagtctgggggagagagcagctctccgatccacta 69355  T

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