View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11035_high_5 (Length: 385)
Name: NF11035_high_5
Description: NF11035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11035_high_5 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 5 - 385
Target Start/End: Complemental strand, 12815308 - 12814928
Alignment:
| Q |
5 |
gagaagcagagaagtagtggtaaaagatcatcatcaggcaagtcttcggataatcctcaaaataaagctgccagggcatatgttaggaatatgcctggtt |
104 |
Q |
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| T |
12815308 |
gagaagcaaggaagtagtggtaaaagatcatcatcaggcaagtcttcggataatcctcaaaataaagctgccagggcatatgttaggaatatgcctggtt |
12815209 |
T |
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| Q |
105 |
caaggagaggtgcatttttggacttacttggtgattctccagaaaacaagagaaaaaagactggttcatcgcattctgacaaagacagcagcagtgctcg |
204 |
Q |
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| T |
12815208 |
caaggagaggtgcatttttggacttacttggtgattctccagaaaacaagagaaaaaagactggttcatcgcattctgacaaagacagcagcagtgctcg |
12815109 |
T |
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| Q |
205 |
caagaaatcaggccatgcttctgtcggaagctaccctgtggcagccggagtttcacagtgaatagtctttgactttagacatttggctgtgtacttggtt |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
12815108 |
caagaaatcaggccatgcttctgtcggaagctaccctgtggcagccggagtttcacagtgaatagtctttgactttaggcatttggctgtgtacttggtt |
12815009 |
T |
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| Q |
305 |
ttttggggtgaaaatacctttatctctggtcttcttgttaaaaccaatacctccagccaaattgtatagtcatgacatggc |
385 |
Q |
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| T |
12815008 |
ttttggggtgaaaatacctttatctgtggtctttttgttaaaaccaatacctccagccaaattgtatagtcatgacatggc |
12814928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 5 - 385
Target Start/End: Complemental strand, 12752348 - 12751966
Alignment:
| Q |
5 |
gagaagcagagaagtagtggtaaaagatcatcatcaggcaagtcttcggataatcctcaaaataaagctgccagggcatatgttaggaatatgcctggtt |
104 |
Q |
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| T |
12752348 |
gagaagcaaggaattagtggtaaaagatcatcatcaggcaagtcttcggataatcctcaaaataaagctgccagggcatatgttaggaatatgcctggtt |
12752249 |
T |
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| Q |
105 |
caaggagaggtgcatttttggacttacttggtgattctccagaaaacaagagaaaaaagactggttcatcgcattctgacaaagacagcagcagtgctcg |
204 |
Q |
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| T |
12752248 |
caaggagaggtgcatttttggacttacttggcgattctccagaaaacaagagaaaaaagactggttcatcgcattctgacaaagacagcagcagtgctcg |
12752149 |
T |
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| Q |
205 |
caagaaatcaggccatgcttctgtcggaagctaccctgtggcagccggagtttcacagtga--atagtctttgactttagacatttggctgtgtacttgg |
302 |
Q |
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| T |
12752148 |
caagaaatcaggccatgcttctgtcggaagctaccctgtggcagccggagtttcacagtgaatatagtctttgactttaggcatttggctgtgtacttgg |
12752049 |
T |
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| Q |
303 |
ttttttggggtgaaaatacctttatctctggtcttcttgttaaaaccaatacctccagccaaattgtatagtcatgacatggc |
385 |
Q |
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| T |
12752048 |
ttttttggggtgaaaatacctttatctgtggtctttttgttaaaaccaatacctccagccaaattgtatagtcatgacatggc |
12751966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 63 - 214
Target Start/End: Original strand, 7779318 - 7779469
Alignment:
| Q |
63 |
aaaataaagctgccagggcatatgttaggaatatgcctggttcaaggagaggtgcatttttggacttacttggtgattctccag-aaaacaagagaaaaa |
161 |
Q |
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| T |
7779318 |
aaaataaagctgccattgcgtgtattaagaatatgcatagttcaaggagagatgcatttttgaacataattggtgattc-ccagaaaaataagagaaaaa |
7779416 |
T |
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| Q |
162 |
agactggttcatcgcattctgacaaagacagcagcagtgctcgcaagaaatca |
214 |
Q |
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| T |
7779417 |
agatcgattcatcgcagtctgacaaaggccgcaacagtgctcccaagaaatca |
7779469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 56 - 214
Target Start/End: Original strand, 7774503 - 7774658
Alignment:
| Q |
56 |
aatcctcaaaataaagctgccagggcatatgttaggaatatgcctggttcaaggagaggtgcatttttggacttacttggtgattctccagaaaacaaga |
155 |
Q |
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| T |
7774503 |
aatcctcaaaataaagctgacattgcatatcttaagaatatgaatggttcaagaagaggtcgatttttggacttaatcggtgcatccccagaaaacaaga |
7774602 |
T |
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| Q |
156 |
gaaaaaagactggttcatcgcattctgacaaagacagcagcagtgctcgcaagaaatca |
214 |
Q |
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| T |
7774603 |
g---aaagatggattcgtcgcagtctgacaaaggcagcgacagtgctcccaagaaatca |
7774658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 124
Target Start/End: Original strand, 7768302 - 7768370
Alignment:
| Q |
56 |
aatcctcaaaataaagctgccagggcatatgttaggaatatgcctggttcaaggagaggtgcatttttg |
124 |
Q |
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| T |
7768302 |
aatcctgaaaataaagctgccatttcttatgtgaagaatatgcatggttcaaggagagatgcatttttg |
7768370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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