View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11035_high_6 (Length: 356)
Name: NF11035_high_6
Description: NF11035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11035_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 348
Target Start/End: Original strand, 12751615 - 12751944
Alignment:
| Q |
18 |
attcttgccctcagatataatcaatgttcaataatcaatcttgacaaatatcgtaatgacaggccaattagttacattaactaaactcaagcaccaaaat |
117 |
Q |
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| T |
12751615 |
attcttgccctcagatataatcaatgttcaataatcaatcttgacaaatatcgtaatgacaggccaattagttacattaactaaactcaagcaccaaaat |
12751714 |
T |
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| Q |
118 |
ccactgaagggaatctactcatcggtgcaaacagtttgacatcgtaatctactcatgtattaaacaaacaacaaatattgggaagatggggatatgcctt |
217 |
Q |
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| T |
12751715 |
caaccgaaggggatctactcatcggtgcaaacagtttgacatcgtaatctactcatgtattaaacaaacaacaaatattgggaagatggggatatgcctt |
12751814 |
T |
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| Q |
218 |
aaatcactagtaatatttatcatcaccaatgctatcatttaaaatattattgtcctnnnnnnnntgctattatttaaaatattatagtacaacatctttg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
12751815 |
aaatcactagtaatatttatcatcaccaatgctatcatttaaaatattattgtcc-aaaaaaaatgctattatttaaaatattatagtacaacatccttg |
12751913 |
T |
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| Q |
318 |
accacgatttctatttgtatctgttcttctc |
348 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
12751914 |
accacgatttctatttgtatctgttcttctc |
12751944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 344
Target Start/End: Original strand, 12814577 - 12814902
Alignment:
| Q |
18 |
attcttgccctcagatataatcaatgttcaataatcaatcttgacaaatatcgtaatgacaggccaattagttacattaactaaactcaagcaccaaaat |
117 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12814577 |
attcttgccctcggatataatcaatgttcaataatcaatcttgacaaatatcgtaatgacaggccaattagttacattaactaaactcaagcaccaaaat |
12814676 |
T |
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| Q |
118 |
ccactgaagggaatctactcatcggtgcaaacagtttgacatcgtaatctactcatgtattaaacaaacaacaaatattgggaagatggggatatgcctt |
217 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12814677 |
ccaccgaagggaatctactcatcggtgcaaacagtttgacatcgtaatctcctcatgtattaaacaaacaacaaatattgggaagatggggatatgcctt |
12814776 |
T |
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| Q |
218 |
aaatcactagtaatatttatcatcaccaatgctatcatttaaaatattattgtcctnnnnnnnntgctattatttaaaatattatagtacaacatctttg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
12814777 |
aaatcactagtaatatttatcatcaccaatgctatcatttaaaatattattgtcc-aaaaaaaatgctattatttaaaatattatagtacaacatccttg |
12814875 |
T |
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| Q |
318 |
accacgatttctatttgtatctgttct |
344 |
Q |
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||||||||||||||||||||||||||| |
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| T |
12814876 |
accacgatttctatttgtatctgttct |
12814902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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