View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11035_low_1 (Length: 585)
Name: NF11035_low_1
Description: NF11035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11035_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 488; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 18 - 578
Target Start/End: Original strand, 45545933 - 45546494
Alignment:
| Q |
18 |
ttaacatcttcactgtcataacctgtacaacatccaaatacaaaatgtttcagaatattttt-gtagaatgtttttaaattaagtatctaaaacctgtgt |
116 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
45545933 |
ttaacatcttcactgtcataatctgtacaacatccaaatacaaaatgtttcagaatattttttgtagaatgtttttaaattaagtatctaaaacctgtgt |
45546032 |
T |
|
| Q |
117 |
agcaccggaactttatattgaagatgtgtcaggtgtgtaacacagacacacgccaccgggacataatattacgttcaannnnnnnctatttctcaaatta |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||| |
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| T |
45546033 |
agcaccggaactttatattgaagatgtgtcaggtgtgtaacacagacacacgccaccgggacatattattacgttcaatttttttccatttctcaaatta |
45546132 |
T |
|
| Q |
217 |
ttaccggtgtctagtcctatatcagtttctagtctgatgtctatgtcaatgatttatagtctaaaaccaagtgccagattctacttcacaagagaatatg |
316 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45546133 |
ttaccggtgtctagtcctatatcagtgtctagtctgatgtctatgtcaatgatttatagtctaaaaccaagtgccagattctacttcacaagagaatatg |
45546232 |
T |
|
| Q |
317 |
ggatgtactagtagtcccttgaattctatcgtaatctaattgcataaagaatgtagaaaagaacatacttggtacttcacgannnnnnnggtcttgaact |
416 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
45546233 |
ggatgtactagtagtcccttgaattctatcataatctaattgcataaagaatgtagaaaagaacatacttggtacttcacgatttttttggtcttgaact |
45546332 |
T |
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| Q |
417 |
attggtttatcctcatccaagtcaccatcatcatcaggaatatgctgagtttcagtgtcatgtccactaccatgatcaaatacattctgaccatgcttct |
516 |
Q |
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| T |
45546333 |
attggtttatcctcatccaagtcaccatcatcatcaggaatatgctgagtttcagtgtcatgtccactaccatgatcaaatacattctgaccatgcttct |
45546432 |
T |
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| Q |
517 |
taatactgtccctaactttcctagcctttgccttcaccctactcataacagacttcatctca |
578 |
Q |
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| T |
45546433 |
taatactgtccctaactttcctagcctttgccttcaccctactcataacagacttcttctca |
45546494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 298 - 577
Target Start/End: Original strand, 45551458 - 45551732
Alignment:
| Q |
298 |
tacttcacaagagaatatgggatgtactagtagtcccttgaattctatcgtaatctaattgcataaagaatgtagaaaagaacatacttggtacttcacg |
397 |
Q |
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| T |
45551458 |
tacttcacaagaaaacatggaatgcgccggtagtcccttgaattctagcataatctaattgca--aataatgtagaaaagaacatacttggtgcttgatg |
45551555 |
T |
|
| Q |
398 |
annnnnnnggtcttgaactattggtttatcctcatccaagtcaccatcatcatcaggaatatgctgagtttcagtgtcatgtccactaccatgatcaaat |
497 |
Q |
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| T |
45551556 |
atcttgtgggtcttgaaccagttgcttatcctcatccaagtcgatatcatcat---gagtatgctgaatttcattgttatgtccattaccatgatcaagt |
45551652 |
T |
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| Q |
498 |
acattctgaccatgcttcttaatactgtccctaactttcctagcctttgccttcaccctactcataacagacttcatctc |
577 |
Q |
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|| | ||||| || || ||||| ||||| ||| |||| ||||||||||||||||| || ||| |||||| ||| |||| |
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| T |
45551653 |
acttgttgaccgtgttttttaattgtgtccttaattttcttagcctttgccttcaccttattcagaacagatttcttctc |
45551732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 165
Target Start/End: Original strand, 45551291 - 45551359
Alignment:
| Q |
97 |
taagtatctaaaacctgtgtagcaccggaactttatattgaagatgtgtcaggtgtgtaacacagacac |
165 |
Q |
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| T |
45551291 |
taagtatctaaaacctatgtagtactgacattttagattgaagatgtgtctggtgtgtgacacagacac |
45551359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 45551175 - 45551209
Alignment:
| Q |
21 |
acatcttcactgtcataacctgtacaacatccaaa |
55 |
Q |
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| T |
45551175 |
acatcttcactgtcataaactgtacaacatccaaa |
45551209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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