View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11035_low_14 (Length: 238)

Name: NF11035_low_14
Description: NF11035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11035_low_14
NF11035_low_14
[»] chr8 (6 HSPs)
chr8 (1-222)||(28307869-28308090)
chr8 (6-168)||(5990185-5990348)
chr8 (36-128)||(4162264-4162356)
chr8 (75-155)||(7492891-7492971)
chr8 (99-146)||(1292854-1292901)
chr8 (36-89)||(1345678-1345731)
[»] chr2 (2 HSPs)
chr2 (5-142)||(15903538-15903676)
chr2 (4-89)||(11049343-11049428)
[»] chr1 (3 HSPs)
chr1 (5-198)||(9022500-9022693)
chr1 (99-148)||(834553-834602)
chr1 (99-148)||(40122598-40122647)
[»] chr4 (5 HSPs)
chr4 (36-143)||(1982898-1983004)
chr4 (7-143)||(37230016-37230152)
chr4 (4-39)||(9927734-9927769)
chr4 (99-148)||(5870104-5870153)
chr4 (95-155)||(26700051-26700111)
[»] chr5 (3 HSPs)
chr5 (79-192)||(7160482-7160595)
chr5 (4-39)||(30182445-30182480)
chr5 (4-89)||(42926698-42926784)
[»] scaffold0078 (2 HSPs)
scaffold0078 (80-142)||(23940-24002)
scaffold0078 (1-89)||(23839-23929)
[»] chr7 (2 HSPs)
chr7 (4-39)||(30025009-30025044)
chr7 (99-148)||(41649411-41649460)
[»] chr3 (4 HSPs)
chr3 (99-149)||(9580999-9581049)
chr3 (4-89)||(53921780-53921866)
chr3 (6-39)||(40592524-40592557)
chr3 (100-148)||(39153761-39153809)


Alignment Details
Target: chr8 (Bit Score: 166; Significance: 6e-89; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 28307869 - 28308090
Alignment:
Q  1 taatcccaagtttctctctcttcaagccctcattcaaaaatgaactgaaacccttaaatagtatcctgtaacagtcaaaatcgtgtcaccattcgtaacg 100  Q
    |||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  28307869 taatcctaagtttctctctcttcaagctctcattcaaaaatgaactaaaacccttaaatagtatcctgtaagagtcaaaatcgtgtcacgattcgtaacg 28307968  T
Q  101 tacgacccaaggtacgaaaagcttatcctgaaatcgtgtcacgcctgccacaaattgtatcacaattttacacctgaaaaaccatgctctctaccaacag 200  Q
    ||||||||||||||| |||||||||||||||||| ||| |||||||||||||||| |||||||| |||||  || ||||||||||||||||| |||||||    
T  28307969 tacgacccaaggtacaaaaagcttatcctgaaattgtggcacgcctgccacaaatcgtatcacagttttattcccgaaaaaccatgctctctgccaacag 28308068  T
Q  201 aatcgtgacacgcctccataat 222  Q
    ||||||||||||||||||||||    
T  28308069 aatcgtgacacgcctccataat 28308090  T

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Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 6 - 168
Target Start/End: Complemental strand, 5990348 - 5990185
Alignment:
Q  6 ccaagtttctctctcttcaagccctcattcaaaaatgaactga-aacccttaaatagtatcctgtaacagtcaaaatcgtgtcaccattcgtaacgtacg 104  Q
    |||||||||||||||||| ||| ||| || ||||||||||| | || |||||| ||||| ||||||| ||||||||||||| ||| ||||||||| |||     
T  5990348 ccaagtttctctctcttctagctctccttaaaaaatgaactaagaatccttaattagtaccctgtaatagtcaaaatcgtgccacgattcgtaacataca 5990249  T
Q  105 acccaaggtacgaaaagcttatcctgaaatcgtgtcacgcctgccacaaattgtatcacaattt 168  Q
    |||||| |||| | || |||||||  ||||||||||||||||||||||||| || |||| ||||    
T  5990248 acccaatgtacaacaaccttatccataaatcgtgtcacgcctgccacaaatcgtgtcacgattt 5990185  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 128
Target Start/End: Complemental strand, 4162356 - 4162264
Alignment:
Q  36 aaaaatgaactgaaacccttaaatagtatcctgtaacagtcaaaatcgtgtcaccattcgtaacgtacgacccaaggtacgaaaagcttatcc 128  Q
    ||||||||||||| || ||||||||||| | ||  || ||||||||||||||||  ||| |  |||||||||||||||||  ||| |||||||    
T  4162356 aaaaatgaactgatacgcttaaatagtaccatgatactgtcaaaatcgtgtcacgcttcctcgcgtacgacccaaggtacacaaatcttatcc 4162264  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 155
Target Start/End: Complemental strand, 7492971 - 7492891
Alignment:
Q  75 tcaaaatcgtgtcaccattcgtaacgtacgacccaaggtacgaaaagcttatcctgaaatcgtgtcacgcctgccacaaat 155  Q
    |||||||||| |||| ||||||||||||| ||| ||||||| | ||  ||||||  ||||  |||||||||||||||||||    
T  7492971 tcaaaatcgtatcacgattcgtaacgtacaacctaaggtacaacaacattatccataaattatgtcacgcctgccacaaat 7492891  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 1292854 - 1292901
Alignment:
Q  99 cgtacgacccaaggtacgaaaagcttatcctgaaatcgtgtcacgcct 146  Q
    ||||||||||||||||||| ||  |||||| |||||||||||||||||    
T  1292854 cgtacgacccaaggtacgacaactttatccagaaatcgtgtcacgcct 1292901  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 1345678 - 1345731
Alignment:
Q  36 aaaaatgaactgaaacccttaaatagtatcctgtaacagtcaaaatcgtgtcac 89  Q
    |||||||| ||||||| |||||||||| | ||| ||| ||||||||||||||||    
T  1345678 aaaaatgagctgaaacacttaaatagtcttctgcaactgtcaaaatcgtgtcac 1345731  T

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Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 142
Target Start/End: Complemental strand, 15903676 - 15903538
Alignment:
Q  5 cccaagtttctctctcttcaagccctcattcaaaaat-gaactgaaacccttaaatagtatcctgtaacagtcaaaatcgtgtcaccattcgtaacgtac 103  Q
    ||||| ||||||||||||||||| ||  ||||||||| |||||||||| |||||||||||||||| ||| |||||||||||| ||| ||||| || ||||    
T  15903676 cccaaatttctctctcttcaagctctacttcaaaaattgaactgaaacacttaaatagtatcctgaaactgtcaaaatcgtggcacgattcgaaatgtac 15903577  T
Q  104 gacccaaggtacgaaaagcttatcctgaaatcgtgtcac 142  Q
    ||| |||||| |||||| ||||||| |||||||||||||    
T  15903576 gacacaaggtgcgaaaaccttatccagaaatcgtgtcac 15903538  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 89
Target Start/End: Complemental strand, 11049428 - 11049343
Alignment:
Q  4 tcccaagtttctctctcttcaagccctcattcaaaaatgaactgaaacccttaaatagtatcctgtaacagtcaaaatcgtgtcac 89  Q
    ||||||||||||||||||| |||| ||   |||||||||||||||||| |||| |||||  |||   || ||||||||||||||||    
T  11049428 tcccaagtttctctctcttgaagctctatctcaaaaatgaactgaaacgcttatatagtgccctaatactgtcaaaatcgtgtcac 11049343  T

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Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 5 - 198
Target Start/End: Complemental strand, 9022693 - 9022500
Alignment:
Q  5 cccaagtttctctctcttcaagccctcattcaaaaa-tgaactgaaacccttaaatagtatcctgtaacagtcaaaatcgtgtcaccattcgtaacgtac 103  Q
    ||||||||||||||||||||||| ||| |||||||  ||||||||||| ||||||| ||| | |||||  |||||||||||||||| ||||| |||||||    
T  9022693 cccaagtttctctctcttcaagctctccttcaaaatctgaactgaaacacttaaattgtaccttgtaagtgtcaaaatcgtgtcacgattcgaaacgtac 9022594  T
Q  104 gacccaaggtacgaaaagcttatcctgaaatcgtgtcacgcctgccacaaattgtatcacaattttacacctgaaaaaccatgctctctaccaac 198  Q
     || ||||||||||||| |||||||  |||| ||||||||   ||   |||| || |||| ||||||||||  |||||||||||||||| |||||    
T  9022593 aactcaaggtacgaaaatcttatccaaaaattgtgtcacgatggctcaaaatcgtgtcacgattttacacc-aaaaaaccatgctctctgccaac 9022500  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 834553 - 834602
Alignment:
Q  99 cgtacgacccaaggtacgaaaagcttatcctgaaatcgtgtcacgcctgc 148  Q
    ||||||||||||||||||| || |||||||  ||||||||||||||||||    
T  834553 cgtacgacccaaggtacgacaaccttatccacaaatcgtgtcacgcctgc 834602  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 40122598 - 40122647
Alignment:
Q  99 cgtacgacccaaggtacgaaaagcttatcctgaaatcgtgtcacgcctgc 148  Q
    ||||||||||||||||||| || |||||||  ||||||||||||||||||    
T  40122598 cgtacgacccaaggtacgacaaccttatccacaaatcgtgtcacgcctgc 40122647  T

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Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 36 - 143
Target Start/End: Complemental strand, 1983004 - 1982898
Alignment:
Q  36 aaaaatgaactgaaacccttaaatagtatcctgtaacagtcaaaatcgtgtcaccattcgtaacgtacgacccaaggtacgaaaagcttatcctgaaatc 135  Q
    ||||||||||||| || |||||||||||   |||||| |||||||||||||||| ||||||||||||||||||||||||| |||| |||||||  ||||     
T  1983004 aaaaatgaactgatacgcttaaatagtacattgtaactgtcaaaatcgtgtcacgattcgtaacgtacgacccaaggtac-aaaaccttatccaaaaatt 1982906  T
Q  136 gtgtcacg 143  Q
    ||||||||    
T  1982905 gtgtcacg 1982898  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 143
Target Start/End: Original strand, 37230016 - 37230152
Alignment:
Q  7 caagtttctctctcttcaagccctcattcaaaaatgaactgaaacccttaaatagtatcctgtaacagtcaaaatcgtgtcaccattcgtaacgtacgac 106  Q
    ||||||| |||||||| |||| || | |||||||| ||||||||| |||| ||||| || ||  || |||||||||||||||| |||| | |||||||||    
T  37230016 caagtttgtctctcttgaagctcttactcaaaaataaactgaaacgcttatatagtgtcttgatactgtcaaaatcgtgtcacgattccttacgtacgac 37230115  T
Q  107 ccaaggtacgaaaagcttatcctgaaatcgtgtcacg 143  Q
    |||||||||  ||| |||||||  |||| ||||||||    
T  37230116 ccaaggtacacaaatcttatccgaaaattgtgtcacg 37230152  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 39
Target Start/End: Original strand, 9927734 - 9927769
Alignment:
Q  4 tcccaagtttctctctcttcaagccctcattcaaaa 39  Q
    |||||||||||||||||||||||||||| |||||||    
T  9927734 tcccaagtttctctctcttcaagccctccttcaaaa 9927769  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 5870153 - 5870104
Alignment:
Q  99 cgtacgacccaaggtacgaaaagcttatcctgaaatcgtgtcacgcctgc 148  Q
    ||||||||||||||| ||| || |||||||  ||||||||||||||||||    
T  5870153 cgtacgacccaaggttcgacaaacttatccacaaatcgtgtcacgcctgc 5870104  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 26700051 - 26700111
Alignment:
Q  95 gtaacgtacgacccaaggtacgaaaagcttatcctgaaatcgtgtcacgcctgccacaaat 155  Q
    ||||||||||||||||||||| |||| |||||||  |||||   | |||||||||||||||    
T  26700051 gtaacgtacgacccaaggtacaaaaaccttatccacaaatcacattacgcctgccacaaat 26700111  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 79 - 192
Target Start/End: Complemental strand, 7160595 - 7160482
Alignment:
Q  79 aatcgtgtcaccattcgtaacgtacgacccaaggtacgaaaagcttatcctgaaatcgtgtcacgcctgccacaaattgtatcacaattttacacctgaa 178  Q
    ||||||||||| |||| |  ||||| ||| || ||||||||| |||||||  ||||||||||||| || |||||||| ||||||| ||||||| || |||    
T  7160595 aatcgtgtcacgattccttgcgtacaacctaaagtacgaaaaccttatccaaaaatcgtgtcacgtctaccacaaatcgtatcacgattttactccagaa 7160496  T
Q  179 aaaccatgctctct 192  Q
    |||| || ||||||    
T  7160495 aaactatactctct 7160482  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 39
Target Start/End: Complemental strand, 30182480 - 30182445
Alignment:
Q  4 tcccaagtttctctctcttcaagccctcattcaaaa 39  Q
    |||||||||||||||||||||||| |||||||||||    
T  30182480 tcccaagtttctctctcttcaagctctcattcaaaa 30182445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 89
Target Start/End: Complemental strand, 42926784 - 42926698
Alignment:
Q  4 tcccaagtttctctctcttcaagccctcattcaaaaa-tgaactgaaacccttaaatagtatcctgtaacagtcaaaatcgtgtcac 89  Q
    |||||||||| |||||||| |||| ||||| |||||  ||||| ||||| |||||||||||  ||| ||  ||||||||||||||||    
T  42926784 tcccaagtttttctctcttgaagctctcatccaaaatctgaacagaaacacttaaatagtactctgcaagtgtcaaaatcgtgtcac 42926698  T

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Target: scaffold0078 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 80 - 142
Target Start/End: Original strand, 23940 - 24002
Alignment:
Q  80 atcgtgtcaccattcgtaacgtacgacccaaggtacgaaaagcttatcctgaaatcgtgtcac 142  Q
    |||||||||| |||||||||||| |||||||||||| | || |||||||  ||||||||||||    
T  23940 atcgtgtcacaattcgtaacgtatgacccaaggtacaacaaccttatccacaaatcgtgtcac 24002  T

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Target: scaffold0078; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 23839 - 23929
Alignment:
Q  1 taatcccaagtttctctctcttcaagccctcattc--aaaaatgaactgaaacccttaaatagtatcctgtaacagtcaaaatcgtgtcac 89  Q
    ||||| |||||||||||||||| |||  ||  |||  ||||||||| ||| || |||||| |||| |||||||| ||||||||||||||||    
T  23839 taatctcaagtttctctctcttaaagatcttcttcaaaaaaatgaattgatacgcttaaacagtaacctgtaactgtcaaaatcgtgtcac 23929  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 39
Target Start/End: Original strand, 30025009 - 30025044
Alignment:
Q  4 tcccaagtttctctctcttcaagccctcattcaaaa 39  Q
    |||||||||||||||||||||||| |||||||||||    
T  30025009 tcccaagtttctctctcttcaagctctcattcaaaa 30025044  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 41649411 - 41649460
Alignment:
Q  99 cgtacgacccaaggtacgaaaagcttatcctgaaatcgtgtcacgcctgc 148  Q
    ||||||||||||||||||| || |||||||  |||||| |||||||||||    
T  41649411 cgtacgacccaaggtacgacaaccttatccacaaatcgcgtcacgcctgc 41649460  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 149
Target Start/End: Complemental strand, 9581049 - 9580999
Alignment:
Q  99 cgtacgacccaaggtacgaaaagcttatcctgaaatcgtgtcacgcctgcc 149  Q
    ||||||||||||||||||| || |||||||  |||||| ||||||||||||    
T  9581049 cgtacgacccaaggtacgacaaccttatccataaatcgcgtcacgcctgcc 9580999  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 89
Target Start/End: Original strand, 53921780 - 53921866
Alignment:
Q  4 tcccaagtttctctctcttcaagccctcattcaaaa-atgaactgaaacccttaaatagtatcctgtaacagtcaaaatcgtgtcac 89  Q
    |||||||||| ||||||||||||| |||| | |||| ||||||| |||| |||||||| ||  || || | ||||||||||||||||    
T  53921780 tcccaagtttttctctcttcaagctctcactaaaaaaatgaactaaaacacttaaataatactctatagctgtcaaaatcgtgtcac 53921866  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 40592557 - 40592524
Alignment:
Q  6 ccaagtttctctctcttcaagccctcattcaaaa 39  Q
    |||||||||||||||||||||| |||||||||||    
T  40592557 ccaagtttctctctcttcaagctctcattcaaaa 40592524  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 39153761 - 39153809
Alignment:
Q  100 gtacgacccaaggtacgaaaagcttatcctgaaatcgtgtcacgcctgc 148  Q
    |||||||||||||||||| || |||||||  |||||| |||||||||||    
T  39153761 gtacgacccaaggtacgacaaccttatccataaatcgcgtcacgcctgc 39153809  T

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