View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11035_low_2 (Length: 469)
Name: NF11035_low_2
Description: NF11035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11035_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 11 - 408
Target Start/End: Original strand, 103626 - 104023
Alignment:
| Q |
11 |
cacagagatcattgtttgacaggtctctgcacagcacatgaaaataattagccaaatgaattataagagctaggtggagtggagaagctcgaataagata |
110 |
Q |
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| T |
103626 |
cacagagatcattgtttgacaggtctctgcacagcacatgaaaataattagccaaatgaattataagagctaggtggagtggagaagctcgaataagata |
103725 |
T |
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| Q |
111 |
agagactcacaaaatcttgagatttttcagtttagtgagttcccttggtattcttcctgtcagcttgttgttgttgagtcgcctgcatagcatcatataa |
210 |
Q |
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| T |
103726 |
agagactcacaaaatcttgagatttttcagtttagtgagttcccttggtattcttcctgtcagcttgttgttgttgagtcgcctgcatagcatcatataa |
103825 |
T |
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| Q |
211 |
tatattttacgatcaaagaaagttgtgtccaccgacacatgtgattacattcaatgaaagaatcaagtgtctcatattattatctgcgccgacttgtctc |
310 |
Q |
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| T |
103826 |
tatattttacgatcaaagaaagttgtgtccatcgacacatgtgattacattccatgaaagaatcaagtgtctcatattattatctgcgccgacttgtctc |
103925 |
T |
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| Q |
311 |
cgtgtcagtgtcagggcttcatagctcaatcacgtatttaattcttgtgaataaattgtaataacttacaagaatttgatattagagaggttagagag |
408 |
Q |
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| T |
103926 |
cgtgtcagtgtcagcgcttcatagctcaatcacgtatttaattcttgtgaataaattgtaataacttacaagaatttgatattagagaggttagagag |
104023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 411 - 453
Target Start/End: Original strand, 104360 - 104402
Alignment:
| Q |
411 |
gaagagaaagtaaaagatagttacagtctagtaacgtggttat |
453 |
Q |
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| T |
104360 |
gaagagaaagtaaaagatagttacagtctagtaacgtggttat |
104402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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