View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11035_low_4 (Length: 456)
Name: NF11035_low_4
Description: NF11035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11035_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 18 - 450
Target Start/End: Complemental strand, 12886347 - 12885915
Alignment:
| Q |
18 |
cactggcatggtgcacttctaggtcaagctccattaacgctgccattaacctcgctgcagggtggtttttcttactgcattggacccttatcattgcatc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12886347 |
cactggcatggtgcacttctaggtcaagctccattaacgctgccattaacctcgctgcagggtggtttttcttactgcattggacccttatcattgcatc |
12886248 |
T |
|
| Q |
118 |
ccaacctataatcttcacgtcgatatctaaatcgattagagcttgattcgaagagggtttattcggtattggctgttgttgctgctgctgttgtggtggc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
12886247 |
ccaacctataatcttcacgtcgatatctaaatcgattagagcttgattcgaagagggtttattcggtattggctgttgttgttgctgctgttgtggtggc |
12886148 |
T |
|
| Q |
218 |
tgatgagactggttttcgttgattttctgaatttcattcttcatcccatcaagttgcttttctaatccatctttatcagattcagttttctgaagctttg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12886147 |
tgatgagactggttttcgttgattttctgaatttcattcttcatcccatcaagttgcttttctaatccatctttatcagattcagttttctgaagctttg |
12886048 |
T |
|
| Q |
318 |
ttttcaactcagtaatgtaagatatagcatcacccaaaagtgaagctttgtccatctttgaaacattaggaacaaccgctcgaagtgcatagaatctctg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12886047 |
ttttcaactcagtaatgtaagatatagcatcacccaaaagtgaagctttgtccatctttgaaacattaggaacaaccgctcgaagtgcatagaatctctg |
12885948 |
T |
|
| Q |
418 |
attcagcttctctcttctttgcctctctgcttc |
450 |
Q |
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||||||||||||||||||||||||||| ||||| |
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| T |
12885947 |
attcagcttctctcttctttgcctctcagcttc |
12885915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 335 - 451
Target Start/End: Complemental strand, 28081244 - 28081128
Alignment:
| Q |
335 |
taagatatagcatcacccaaaagtgaagctttgtccatctttgaaacattaggaacaaccgctcgaagtgcatagaatctctgattcagcttctctcttc |
434 |
Q |
| |
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|||||||||||||| || | || || |||||||||||||| |||||||| ||||| || || || || ||||||||| | || || ||||| ||||||| |
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| T |
28081244 |
taagatatagcatcgcctagcagcgatgctttgtccatcttagaaacatttggaaccacagcacgtagagcatagaatttttggttaagcttttctcttc |
28081145 |
T |
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| Q |
435 |
tttgcctctctgcttct |
451 |
Q |
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|||| |||||||||||| |
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| T |
28081144 |
tttgtctctctgcttct |
28081128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 144
Target Start/End: Complemental strand, 28081526 - 28081435
Alignment:
| Q |
53 |
aacgctgccattaacctcgctgcagggtggtttttcttactgcattggacccttatcattgcatcccaacctataatcttcacgtcgatatc |
144 |
Q |
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||||| ||||| ||| |||| |||||||| || ||||| |||||||| | ||| ||||| ||||||||||| ||||||||||| || ||||| |
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| T |
28081526 |
aacgccgccatcaacttcgccgcagggtgattcttcttgctgcattgaatcctaatcatagcatcccaacccataatcttcacatcaatatc |
28081435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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