View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11035_low_8 (Length: 331)
Name: NF11035_low_8
Description: NF11035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11035_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 28 - 316
Target Start/End: Complemental strand, 20612680 - 20612392
Alignment:
| Q |
28 |
cagagaaacgtttttactaatgttcaaagataggccttaaaacactgtttccttcttcttctttttgtaactcatgaacgataaaactaaaagcttcaaa |
127 |
Q |
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| T |
20612680 |
cagagaaacgtttttactaatgttcaaagataggccttaaaacactgtttccttcttcttctttttgtaactcatgaacgataaaactaaaagcttcaaa |
20612581 |
T |
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| Q |
128 |
tgagacatcaagattagacatgtatgtttgaactaatttctcatcactctttaaattttgaatctgcaataatatttatctctaacatctaattcatttc |
227 |
Q |
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| T |
20612580 |
tgagacatcaagattagacatgtatgtttgaactaatttctcatcactctttaaattttgaatctgcaacaatatttatctctaacatctaattcatttc |
20612481 |
T |
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| Q |
228 |
atacaatgtattcannnnnnnnnnnnnaaattttgatagtatattgaatttcttcggttcaatttatcgagttgtttccaccttcctca |
316 |
Q |
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| T |
20612480 |
agacaatgtattcatttttatttttttaaattttgatagtatattgaatttcttcggttcaatttatcgagttgtttccaccttcctca |
20612392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 238
Target Start/End: Original strand, 13375023 - 13375058
Alignment:
| Q |
203 |
ttatctctaacatctaattcatttcatacaatgtat |
238 |
Q |
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| T |
13375023 |
ttatctctaacatctaaatcatttcatacaatgtat |
13375058 |
T |
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