View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11035_low_9 (Length: 323)

Name: NF11035_low_9
Description: NF11035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11035_low_9
NF11035_low_9
[»] chr8 (1 HSPs)
chr8 (21-318)||(16961424-16961721)


Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 21 - 318
Target Start/End: Original strand, 16961424 - 16961721
Alignment:
Q  21 aaagctgagatggtatttctccactaaagtaatttgagctaatgttaagtatttctagtgaagataattgagctattgtttcaggtagtggcccccataa 120  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16961424 aaagttgagatggtatttctccactaaagtaatttgagctaatgttaagtatttctagtgaagataattgagctattgtttcaggtagtggcccccataa 16961523  T
Q  121 accaagagaaaccaaagagagtactttcaagcttgataaagtggaaagtgttgaaaagagtgtgtatgagttgaaattttgaggcaatgaagtaaactca 220  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  16961524 accaagtgaaaccaaagagagtactttcaagcttgataaagtggaaagtgttgaaaagagtgtgtatgagttgaaattttgaggcaatgaggtgaactca 16961623  T
Q  221 ttgttgtttccaacaacatgcaactgtgtaacattttcttcatagcacactagtgttaaatatggagtaggttcaatgttgcagaaatctgtgctgct 318  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  16961624 ttggtgtttccaacaacatgcaactgtgtaacattttcttcatagcacactagtgttaaatatggagtaggttcaatgttgcagaaatctgtggtgct 16961721  T

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